Oncorhynchus gorbuscha (pink salmon): 124002136
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Entry
124002136 CDS
T07892
Name
(RefSeq) hypoxia-inducible factor 1-alpha isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04137
Mitophagy - animal
ogo04140
Autophagy - animal
ogo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124002136
04137 Mitophagy - animal
124002136
04148 Efferocytosis
124002136
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124002136
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
124002136
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
HIF-1a_CTAD
HIF-1
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
124002136
NCBI-ProteinID:
XP_046165393
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Position
LG17:27131335..27155086
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AA seq
756 aa
AA seq
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MDTGVVPEKKSRVSSDRRKEKSRDAARCRRGKESEVFYELAQELPLPHSVTSNLDKASIM
RLAISYLHMRNLLNTDDEEEQEESEMDSQLNGSYLKAIEGFLMVLSEDGDMIYLSENVNK
CLGLAQIDLTGLSVFEYTHPCDHEELREMLVHRTGTSKKSKEANTERSFFLRMKCTLTNR
GRTVNVKSATWKVLHCSGHVRVHESPVEQSPGGHKEPSVPYLVLVCDPIPHPSNIEAPLD
TKTFLSRHTLDMKFTYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLMKTHHNLFAKG
QVSTGQYRMLAKRGGFVWVETQATVIYNNKNSQPQCVVCVNYVLSGIEEEKMMLSLEQTE
DMRPVKKELEEEESSEPEVSPVLPKEEKSPELDVIKLFTRAVETQPLSSLYDRLKEEPEA
LTLLAPAAGDTIISLDFSSPDSDILQKEVPLYKDVMLPSTSDKLALPLSLLPPSDQHLVP
NTSVDTTEVSTGPDSSSTPGSHSFTEPDSPLDFCFPMESDISAEFKLDMVERLFAIDPEP
KTPFTLQAMEDLDLEMLAPYIPMDDDFQLRTLSPEEPLSCGPAQPLECSSVHLTQEVHRY
PGSPFNAPGSLAASPALAAPEPADSPCPASLLTKTVPQMDREISLRSLGSQNAQRKRKMS
LSQAVGIGGLLQDRPGPGKKLKVSELSHADAPSNRTILLLPTDLASRLLGISSEGSGSPF
TLPQLTRYDCEVNAPVGGRQILLQGEELLSALDQVN
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atggacacaggagttgtccccgaaaagaaaagcagggtgagctcggaccggaggaaggag
aagtcccgggatgcggcgcgatgcaggagggggaaggaatctgaggtgttctacgagctg
gcccaggagctgcccctgccccacagtgtcacctccaacctggacaaggcctccatcatg
agactggccatcagttacttgcacatgaggaatctgctgaacacagacgatgaggaggag
caggaggagagtgaaatggactcccagctgaatggctcctatctgaaggctatagagggc
ttcctcatggtgctgtctgaggacggggacatgatctatctctctgagaatgtcaacaag
tgcttgggtctggcacagattgacctgacaggacttagtgtgtttgagtacacacacccc
tgtgaccatgaggagctgagggagatgctggtacacagaacagggacctctaaaaagtcc
aaggaagcaaacacagaacgcagcttcttcttgcggatgaaatgtaccctcaccaacagg
gggcgcactgtcaatgtcaaatcagccacctggaaggttcttcactgctcaggccatgtg
cgggtccatgaatccccagttgagcagagccccggtgggcacaaggagccgtccgtcccc
tacctggtgctggtctgtgaccccatcccccacccctccaacatcgaggcgccgctggac
accaagactttcctcagccgccacacactggacatgaagttcacctactgtgatgagagg
atcactgagctgatgggctatgatccagaggacctgttaaatcgctctgtgtatgagtac
taccacgccctggactcagaccacctcatgaagacccatcacaacttgtttgcgaagggc
caggtgagcacaggccagtaccgcatgctggctaagagaggaggctttgtgtgggtggag
actcaggccactgttatctacaacaacaagaactcccagccccagtgtgttgtgtgtgtc
aactatgtgctcagtggcattgaggaggagaagatgatgctctctctggagcagacggag
gatatgaggcctgtgaagaaggaactggaggaggaggagagctctgagccagaggtgtcc
cctgtgctcccgaaggaggagaagagcccagagctggatgtgatcaagctgttcacccgg
gcggtggagacccagcccctttccagcctgtatgaccgactgaaggaggaaccagaggcc
ctcacccttctggccccggccgctggagacaccatcatctccctggacttcagcagcccc
gactctgacatcctgcagaaggaggtgcctctctacaaggatgtgatgctgccctccacc
agtgacaagctggccctgccactctctctgctgccccccagtgatcagcacctggtcccc
aacacctcagtggacaccactgaggtgtccactggtccagactcctccagcaccccaggc
agccacagcttcactgagcctgacagcccattggacttctgtttcccaatggagtctgac
atcagtgctgagtttaaactggacatggtggaaagactgtttgccatcgacccagagcca
aagactcctttcaccttacaggccatggaggacctggacctggagatgttggctccgtac
atccccatggatgatgacttccagctgcgcaccctgtccccagaggagcctctgtcttgt
ggcccagcccaacccctagagtgctcttctgtgcacctcacccaggaggtccaccgctac
cctggctcccccttcaatgccccaggcagcctggcagcttccccagccctggcagccccg
gagccagcagatagcccttgccctgcttccttactcaccaagacggtgcctcagatggac
agggagatctcccttaggtcactgggctcccagaatgcacagcgcaagaggaagatgtct
ctgtctcaggctgtcggaatagggggattgctccaggaccgtcctggtccaggtaaaaag
ctcaaagtgtctgagctgagccacgctgatgctccctctaacaggaccatactgctcctg
cctacagacctggcaagccgtctgcttggcatctcatcggagggcagcggctcacccttc
acccttcctcagctgacccgatatgattgtgaggtcaacgcccccgtggggggtcgccag
atcctgctgcagggcgaggagctcctgagtgccctggaccaagtcaactga
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