Oncorhynchus gorbuscha (pink salmon): 124003060
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Entry
124003060 CDS
T07892
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124003060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124003060
03009 Ribosome biogenesis [BR:
ogo03009
]
124003060
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124003060
Spliceosome [BR:
ogo03041
]
Complex A
U1 snRNP components
U1 related factors
124003060
Complex B
124003060
Ribosome biogenesis [BR:
ogo03009
]
Eukaryotic type
Pre-60S particles
Helicases
124003060
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Motif
Other DBs
NCBI-GeneID:
124003060
NCBI-ProteinID:
XP_046167017
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All DBs
Position
LG18:complement(15998112..16009260)
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AA seq
629 aa
AA seq
DB search
MPGFSDRDRGRDRGYGAAPRFGGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKN
FYQEHPDVTRRPPQEVENYLRSKDVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWAEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQY
VQINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEA
RGRGGGGRGGFRDDRRDRYSGGRSYGGGGGGSYRDKDSDRGFGGGPKSAFGTKTQNGVGY
GGSTYDKGASSGGSYGNSYGSNGQSSFGATNQVGAFGGQNFQAPPQFGAAQAAAPNGMGR
PPFPFNPQAQQSQQPPPMVPYSMPPPFPQ
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggcagagacagggggtatggagctgcacctcgt
tttggaggcggcggtggtggcagtaggggtggaccccctcaggggaaatttggcaaccca
ggtgaaaggctgcgcaaaaaacactggaacatggatgagctcccaaagttcgagaagaac
ttctaccaggagcatccggatgtgacccgcagaccacctcaagaggtggagaactacctg
cgaagtaaagacgtaacagtcaaaggcagagactgccccaagcccatgatgaagtttcac
gaggccaattttccaaattatgtgatggatgtgattgccaaacaaggatgggctgagcca
actcctatccaggctcagggctggcctctggccctcagtgggaaagacatggtgggcatc
gcccagacaggctccggtaaaacccttgcttatcttctgcctgcaatcgtgcacattcaa
caccagccattcttggagcatggagacggacctatttgtttggtgctggccccgacccgt
gagctggctcagcaggtgcagcaggttgccgctgagtacggcagggcctcccgcctgaag
tcagtctgcgtctatggtggagcccccaaaggaccccagattcgggacctcgagagaggt
gttgagatctgtattgccaccccagggcgtctcatagacttcctggaggctgggaagacc
aaccttcgcaggtgtacttaccttgtgctggacgaggctgaccgtatgctggacatgggc
ttcgagccccaaatccgcaaaattgtggaccaaattcgaccggatcgtcagaccctcatg
tggagtgccacctggcccaaggaggtgcgccagctagctgaggacttcctgaagcagtac
gtccaaatcaacgtgggcgcgctgcagctcagcgctaaccacaacatcctgcagatagtg
gacgtgtgcaacgacggcgagaaggatgacaaactcctccggctgctggaagagatcatg
agcgagaaggagaacaagaccataatctttaccgagaccaagagacgctgcgatgagctc
accaggaggatgagacgagatggctggccagcaatgggtatccacggagacaagagccag
caggagagggactgggttctcaatgagttcaaatatggcaaggcccccatcctcatcgcc
actgacgtggcctcccgtggtctagatgtggaggatgtgaaatttgtcataaattatgac
tatcctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaa
acaggcaccgcctacaccttcttcacccccaacaacatgaaacaggccagtgacctcata
gctgtgctccgcgaagctaaccaggctatcaaccccaagctcctccagatggcagaggcc
agaggtcgtggcggggggggaagaggtggctttagggatgaccggcgagataggtattct
ggggggaggagttacggtggtggtggtggtggtagttacagggacaaggatagcgacagg
gggttcggagggggaccaaagagtgccttcggcacaaaaacccaaaacggagtgggctac
gggggtagcacctatgacaagggcgctagctctggcggtagctacggcaacagctacggc
agcaacggacagtctagcttcggcgccaccaaccaggtgggtgcattcggaggccagaac
ttccaggcccctccacagtttggagctgcacaggcggctgccccaaacggcatgggtcgt
ccgccattcccctttaacccacaggcacagcagtcccaacaacccccacccatggtaccc
tactctatgcctccccctttcccacagtaa
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