Oncorhynchus gorbuscha (pink salmon): 124003203
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Entry
124003203 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: protein RRP5 homolog
KO
K14792
rRNA biogenesis protein RRP5
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
ogo03009
]
124003203
Ribosome biogenesis [BR:
ogo03009
]
Eukaryotic type
90S particles
Other 90S particles
124003203
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
OB_RRP5_4th
Suf
TPR_19
HAT_Syf1_CNRKL1_C
TPR_14
ARM_TT21
UTP6_C
NRDE-2
TPR_16
TPR_CcmH_CycH
TPR_15
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
124003203
NCBI-ProteinID:
XP_046167237
LinkDB
All DBs
Position
LG18:complement(8226516..8250347)
Genome browser
AA seq
1809 aa
AA seq
DB search
MASTEEDFPRGGKTKQTTESKAEPVRRHTEVDNLFETHTAEESKKRKGQKEGALKKAKRQ
RTSKEEALKLNTTTSVDILQLKSLKVGTLLLGCVKEVADFEVTINLPSGLLGYLNITNIS
DSYTKILSDHLDSASSEEIFSLHSLFSPGMLVRCVIARLDTAKGGSVSIQLSINPKEVNK
GLSTGSLKAGLILSGCVQSIEDHGYLVDLGIKGTKAFLPKQAAKDKTNSPRELKVGQYVT
SLLEEVKNDERVVRLSISPTAVAQAVADTAHGWTLTNLLPGLLVKAQIKKVTPRGLILEF
LSSFTGLVDFMHLEPEQASTFNEGDSVKACVLYVEPSTRLVGLSLRSHLLQPGGDVDLVT
TERIGEVAHGCKMTALHHLSGAMLELPDQTVVFVHRNHMKEPMEAFNLNRVMAKPEHTCR
IMDFSPMEQVHLVSLRQSIIDAPFFRRYHDIQPGQIVQGTVTSLQSHGMMVKVTDYIRGL
VPWTHLSDIILKNPEKKYTVGMPIKCRVLSVDPQAKKLTLTRKRALIDSSLPPFLTYEDA
RRGRVSHGFIVCVKDFGCIVRFYGEVKGLVPPNELSTEPVVVPENMFYVGQVVKAKVLNC
DVEKEKLLLSFKAVTGGDTEGPPKPKFDFEVGKKVEVKVVSKVLTGLEVSILPEETTALL
PMMHLSDHVSNCLLLWEGLQEGDIISNIVCLSEKKPNITLTKKPTLKSFLEEGGMVAKEF
SDITVGMQLIGWVKNIMPYGVFVEFPYGLVGLAPKAAMSDKFVSDTTSHFQLGHTVFAKV
TNLDEEKRRFLVSLKMSEVPSPKRDCQARLIRGLQERKEVMEMMASRGDSDLLKQLSAVT
IGQRMKMSVDEVREDGSVTFKSDELSAATVLATKDHTPGKLATGQECMSVILHVDLVTSE
VYVSLLAKLTGKRKAVEAGSTHTATVHHADRDFAVISLGDTAQLTVIQTTNHLNETFRFD
SEKLTAGKTLAITVTKSICEELEGLPLVSWELAPPTSRRFISNSKRSKGMYRYGDVVKGK
VKTVKPTCVLVTLEDGSTGCVHVSEIQEVVCVGTFPTSFLKIGSEVTARVIGGREGNSHR
FLPFSHPNFTYSMPELSLLPRNLKEDADVKPIKTKEKLKRYQVGDDVICFVSKYFPKRKC
LEVTTGPSVTGTVEQLAMTSDPEGAKHPEKLFKLGQAVSAKVVTVSTSKPSRLSLSLNGV
HKLEKGHVIMGLVQKIDPVLGLLVKLPFSAMGTVAMEDLADKYKPKPLERYSKDQLVRCC
IVGEATSNWQLSLRSSRTNPEKASVVKDPEIVSLEDLSEGQIVRGYVRTVNAQGSLYSHL
SRSIQGRAQFQKATKYFVASHQDYAKKVPQATLLTTKILSIDKESGLVDLSLLQEDTGRP
DVLPESLGLHLRLTGEAKEKRDATKKRRRTESESKQGTAENVSTKKKTKGKGEDSDSGVE
VYFREEEEENKLEPAEVEKPVPVQPARLQVTXGFSWDAALSALKPASAALGGEDSSDGED
GEVNTKPQKKSHHEQGVEKREAEKALTKLETELMDPGLRPQTAASFERLLLGSPDSSLLW
LQFMAFHLQATQIEQARAVAERALKTISFREEQEKLNVWVALLNLENLYGTEESLQKVFE
RAVQYCEPMPVYQQLADIYAKCQKTKEAEGLYKTMVKRFRQEKAVWLSYGTFLLQQGQSD
AASALLQRAIKSLPNKDNVDLIAKFAQLEFRYGDVERGKAMLDRILTSYPKRTDLWSVFI
DLMVKHGSQKEVRAVFDRVIHLSVAVKRIKFFFKRYLEYEKKSGTPESIQAVKDKALEYV
ESKGTEAVR
NT seq
5430 nt
NT seq
+upstream
nt +downstream
nt
atggcatcaacggaggaggacttccctcgcggaggtaaaaccaagcagaccactgaaagt
aaagcagaacctgtgagaaggcatacagaagtggacaatctgttcgagacacatacagca
gaggaatccaagaaaaggaagggacagaaagagggtgccttgaagaaagctaagaggcaa
aggacgagcaaagaggaggctctgaagctcaatacaacaacttctgtagatatcctacag
ttaaaaagcctgaaggtgggtaccctactgctgggctgtgtgaaggaggtggcagatttt
gaggtgacaattaacctgcccagcggccttttgggatacctgaacattaccaatatctcg
gactcgtacaccaagatactgagtgaccacctggactctgcttcttcagaggagatcttc
tctctccacagtctcttctccccgggcatgttggtcaggtgtgtgatagccaggttggac
actgccaaaggaggatcggtcagcattcagctgtcaatcaaccccaaagaggtcaacaag
ggcttgagtactggctctctgaaggctggcttgatcctgagtggttgtgtgcagagtatt
gaggatcacggctacctggtggacctcggcatcaagggaaccaaggccttcctgcccaag
caggcagccaaagacaaaacgaatagtccgagagagctgaaggtgggccagtatgtgact
tctctgttggaggaggtgaagaacgatgagcgtgtggtccgtctgtccatcagccccacg
gcggtggcccaggccgttgcagacacagcgcacggctggacccttaccaacctgctgcct
ggcctactggtcaaggcccagatcaaaaaggtgaccccacgtggtctgattctggagttc
ctctcctccttcaccggcctggtggactttatgcacctggaaccagaacaggcctccaca
ttcaacgagggagacagcgtgaaggcctgcgtcctttatgtggagccgtccacccggctg
gtgggcctgtccctgcgcagccacctgctgcagccagggggcgatgtggatctggtgacc
actgagaggataggggaggtggcgcatggctgcaagatgaccgctctacatcacctgtct
ggagccatgctggagctgcctgaccagactgtggtgtttgtacataggaaccacatgaag
gagcccatggaggcgttcaacctgaaccgtgtcatggccaagcctgaacacacctgtagg
atcatggacttcagccccatggagcaggtgcacctggtcagcctgcgtcagagcatcatt
gatgccccgttcttcagaagataccatgacatccaacctggacagattgttcagggcacg
gtgacatccctccagagccatggcatgatggtgaaggtgaccgactacatcagaggcctg
gttccatggacacacctctctgacatcatcctcaagaacccagagaagaagtacacagtg
ggcatgcccatcaagtgccgggtgttgtcggtggacccacaggcgaagaagctgacccta
accaggaaaagggccctgatagattcctccctccccccgttcctgacctacgaagatgcc
cgccgcggtcgcgtctcccacgggttcatcgtctgtgtcaaggactttggctgcatcgtc
cgtttctacggcgaagtcaaggggctggtgccccccaacgagctcagcacggagccagtg
gtagttcctgagaacatgttctacgtcggacaggtggtgaaggctaaagtgctgaactgt
gacgtggagaaggagaagctccttctttccttcaaggcagtgacaggaggagacacggag
ggaccgcctaaacccaagtttgactttgaggttgggaagaaagtggaggttaaggtggtg
agtaaagtcctgaccggtctggaggtgtccattctgccagaggagaccaccgccttgcta
cccatgatgcacctctccgaccatgtgtccaactgtctactgctgtgggaggggctgcaa
gagggtgacatcatctccaacattgtctgcctcagcgagaagaaaccaaatattaccctg
accaaaaagcccactctgaagtcattcctggaggaggggggcatggtggctaaggagttc
tctgacatcacagttgggatgcagctgattggttgggtcaagaacattatgccctacgga
gtgtttgtggagttcccctatggtctggttggcctggcccctaaagcggccatgagtgac
aagtttgtcagtgacacgacatctcacttccagctgggccatacggtgtttgccaaggtg
accaacttggatgaggaaaagcgcaggttcctggtcagtctcaagatgtcagaggtcccc
tcccctaagagagactgccaggccaggctgatccgaggcctgcaggagaggaaggaggtg
atggagatgatggccagcagaggtgactctgacctactcaagcagctgtctgcggtgacc
ataggccagaggatgaagatgagcgtagacgaggtgagagaggacgggagtgtcaccttc
aagtcagacgaactcagcgcagccaccgtactggccaccaaggaccatacgccgggtaag
ttggcgacgggacaggagtgcatgtcggtaatcctccacgttgacctcgtgacctctgaa
gtctacgtgtccctcttggctaaactgaccggcaagaggaaagcggtggaggcagggtcc
acgcacactgccactgtgcatcacgccgaccgcgactttgccgtcatctcattgggagac
acggcccaactgacggtcatccaaaccaccaatcacctcaacgaaacgttccgcttcgac
tctgagaaactgaccgccggtaaaaccctggcgatcacagtcaccaaatccatctgcgag
gaactagaagggctccccctagtgtcctgggaactcgccccgcccacaagcagaaggttc
atctccaactccaagaggtcgaagggcatgtatcgctacggcgacgtggtcaaggggaag
gtgaagacggtgaagcctacgtgtgtgctggtgacgctagaggacgggagcacggggtgc
gtgcacgtgtccgagatacaggaagtggtgtgcgtgggaacgttccccacgtccttcctc
aagataggaagtgaggtcacagcccgggtcatcggaggacgggagggcaacagtcacagg
ttcttgccgttctcccatcccaacttcacttactccatgcctgaactctcacttcttccc
aggaacctgaaagaagacgcagatgttaagcctatcaagaccaaagagaagctgaagcgt
tatcaggtcggagacgacgtcatttgctttgtgtcaaagtactttccaaagaggaagtgt
ctagaagtgactactggtccctcagtaactggaactgttgaacaactggccatgacctct
gaccctgaaggtgccaaacacccagagaagctgttcaagctgggccaggcggtcagtgct
aaggtggtgacagtcagcacctccaagccctcacgcctttcattgtccctcaatggtgta
cacaagttggagaagggccatgtaatcatggggttggtgcagaagatagatccagtcctg
ggtctgctggtgaagctgccgttcagcgccatgggaacggttgccatggaggacctggcc
gacaaatataagccaaaacctctggagcggtacagcaaggaccagctggtcaggtgctgc
attgtaggagaggcgacgagcaattggcagttgtccctccgctcttcaaggacgaaccca
gagaaggcctcggttgtaaaggacccagagatagtgtctctagaagacctgtcagagggg
cagatcgtcagaggctatgtgaggactgtcaatgcacaggggagtctttattcacatttg
tctagatccatacagggcagagcccagtttcaaaaggccactaagtactttgtggctagc
caccaagactatgccaagaaagtaccgcaggccacactgctcaccaccaagatcctcagc
atcgacaaagaaagcgggctggtggatctgtctctgctccaagaggacactgggagacca
gacgtgctcccagaatccctggggctgcacctgcgcctgacaggagaggccaaggagaag
cgtgacgccaccaagaagaggagacgcacggagtcggagagcaagcagggaaccgcagaa
aatgtgtcaacgaagaagaagacgaaggggaaaggagaggacagcgacagtggagtggag
gtgtacttcagagaagaagaggaggaaaataagttggagcctgcggaggtagagaagcct
gtcccagtgcagccggccagactgcaggtgaccngggggttctcctgggatgcagcgctg
agcgccctgaaaccagcgtccgctgccctggggggagaggactccagcgacggagaggac
ggcgaggtgaacaccaagccccagaagaagtctcaccatgagcagggggtggagaagcgg
gaggctgagaaggccctgaccaagctggagacggagctgatggacccaggcctgcgaccc
cagacggcggctagctttgagcgcctgctactcggctcgcctgacagctctctgctctgg
ctgcaattcatggccttccacctgcaggccacacagatagaacaggctagagcggtggct
gagagggctctgaagactatctccttcagagaagagcaggagaagctgaatgtgtgggtg
gctctgttgaacctggagaacctgtatgggacagaggagagtcttcagaaggtgtttgag
cgagccgtgcagtattgtgaacccatgcccgtctaccagcagctggctgacatctacgcc
aagtgtcagaagactaaggaggcggaaggtctgtacaagaccatggtgaagcggttccgt
caggagaaggctgtgtggctgagctacgggaccttcctgctccagcagggtcagagtgac
gcggccagcgccctgctacagagggccatcaagagcctgcctaacaaagacaatgtggat
ctgatagcgaagtttgcccagctggagttccgctacggagacgtagagcgaggaaaggcc
atgttggacaggatcctgaccagctaccccaaacgcaccgacctgtggtccgtcttcata
gacctcatggtcaaacacggctcccagaaggaagtccgggctgtgtttgaccgtgtgatc
cacctgagtgtggcggtgaagaggatcaagttcttcttcaagcgttacctggagtatgag
aagaagagcggcacgccagagagcatccaggctgtgaaggacaaggctctggagtacgtg
gagtctaaagggacagaggccgtcagatag
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