Oncorhynchus gorbuscha (pink salmon): 124003223
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Entry
124003223 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: trinucleotide repeat-containing gene 6C protein-like
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124003223
03036 Chromosome and associated proteins [BR:
ogo03036
]
124003223
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124003223
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124003223
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
UBA_7
UBA
RRM_1
RRM_occluded
Calcipressin
UBA_NBR1_C
Mei5_like
THOC7
Motif
Other DBs
NCBI-GeneID:
124003223
NCBI-ProteinID:
XP_046167269
LinkDB
All DBs
Position
LG18:<12790637..12842079
Genome browser
AA seq
1995 aa
AA seq
DB search
EKRTTREENHLMEENKNKKQEKTKKEAAQKQAADTKTKVPEPAKPSPGPLHHPTTSVTLP
QASHPPSSSSSVRTNGKRTPPSTQQTPQQLTPPPLLSSSGPRYPPREVPPRFRQQEHKQL
LKRGQPLPAGALSSLTVTPASDPLISGAPPSSSSAGKRHTDLPFQSGLGAQHENPHWGAL
PPVTDRSSSTTSSSWDQVIIDGSDTEAWPSISRSSVSRPANPPECATAADCTNPETSSYM
SMAAGATSQQAHYPSSLKANVANVASMMQPSGGQGVGAIGSRGWGSGPGPIPMGPTEGSQ
TRRPWAQPGSEWRSTQLEFPASFSLNLNPNANPSAWPVLGQEGWRWPEPRLTTTQRYPGQ
WEPGRGREQQQQHLGRMMSPDAPSSNKNVSFSSMEHPNLNTDGQNSHHTKQPLSPIHGLP
GWGGQSPTESSQLNGDAGSSVWGNEDTKTPANSSKNSGWDSAPSGGMSGWGHSGSGGGGS
GSGEGGWGGDWGKHSSGGGEVKGGWDSSDGPAQDQQVSSWGQPTPAPASEGSGSGGSEGR
IHRRDQTGSEDGGPPPLPRQDLDPRVLCNTGWGQTPVRQHTSWEMEEQRAANDRKTSEMR
GGGGGDTWRGSNSPSSGSPPDPRNGGANPSLGPSQRPGSGGPGGKSEGPSGWGGPPPSSW
GEQPVNKAPNGSVSGWGDPMAQGPNTTNNGPKSGGQSWGVPEEKSSPTWDDGPAKTQQNQ
PQSWGEGPKSSSHGWGSGHGSGSNGSNGSNSGEWREPAEVKKNGSSSHMWEGEGGNGRGG
GWKDSPRGGGGSGGGWGSKPAPAVGGWGETQNQHPNGPAPGWGSKPQECPSGPAPGWGSK
PQESPSGQAPGWGSKPQESPSGPAPGWGSKPQESPSGPAPGWGSKPQESPSGPAPGWGSK
PQESPNGPAPGWGSKPQESPNCNSGGGGPGGGSMGSWGGPASVRQSSNPGWGPGSSGAKP
DPAMEPTGWEEPSPPSIRRKMEIDDGTSTWGDPSAYNKTVNMWDRNNPTGGNGNQGNNPT
QPPTSKSSGGLTVNNSHNNHSSVPPSNNNHHHMNHHHLHHGQPLPHSQHHGNNNGSANTA
APHQGGGPQGRPPMANPGWGELPSVQQPKPEPAWGEPAGPSPAVDNGTSAWGKPPGVPGG
WGDGGHEPNGPYRRGNNGPSGPTPCKPALKSMQDGWGGGREEEMGMSSGQWDADAGDVWN
SPASQENNSSCNSWGQPPKKGPPKGKMGNQPDEAWIMNRLIKQLTDMGFPRDPAEEALKS
NNMNLDQAMSALLEKKTELDKRGMGMSDYNNGMNKPLGCRPQALSKDPSSDRSPFLDKDG
GLSDDAPPSPFLPSPVSLKLPLVNNLQPGLTLGSPGLNMQNLNNRQMQSGMLGSSGAALS
RAMQQPPPQPPVPPLGSSQPSLRAQVPQFLTPQVQAQLLQFAAKNIGLNPALLTSPINPQ
QMTLLYQLQQLQMAYQRLQIQQQMMQAQRNVSGPIRQQEQQVARTINNMQQQIQQHQRQL
YQALLMKQQPPGSHSSSGLHPGQGKSALDSFPGHPQAPGLSDLHTKEPHSSPSSYSPYPL
SGLNPNMNVNCMEVGGLSMKEPPQPQSRLSQWTHPNSMDSLSGNSSHMEANLNKHVMKRW
GQGPGKSPKDQITNGTNINWPPEFCPGVPWKGLQNIDPENDPNMTPGSVPSGPTINTNIQ
DVNRYLLRDRSGGSSPPSPPQNGALPPSVDWPVSGCYTSSFSLSSPDEESAGKLSDMKST
WSPGPISHPSQASLSHELWKVPQGPRNNTAPSRPPPGLTNPAKPSSTWGGNSLGLAQGWS
SSYTSEGTTWSTDSSNRTSSWLVLRNLTPQIDGSTLRTLCMQHGPLITFHLFLTQGNAVV
RYSSKEEAAKAQKSLHMCVLGNTTILAEFAGEEEVNRYFAQGQQQQLPPTTSWQPNPGTN
QTRMGGGSQQHAIGHHWSGGLGGGAKTGGDLLWGGVPQYSSLWGPPSGDDSRGVIGSPNP
INTLLPGDLLSGESM
NT seq
5988 nt
NT seq
+upstream
nt +downstream
nt
gagaagcgaacaacacgagaagagaaccatttgatggaagaaaataaaaataaaaagcaa
gaaaagaccaagaaggaagctgctcagaaacaggctgctgacacgaaaaccaaagtgcca
gagccagctaagcccagccccggtcccctccaccaccccaccaccagtgtgaccctgccc
caggcctcacatcccccctcctcctcctcttcagtcagaaccaatgggaagcgcaccccc
cctagcacccagcaaacaccacagcagctgacccctccgccgctgttgtcgtcctcaggc
ccccgctacccgccccgtgaggttcccccgcgtttccgccagcaggagcacaagcagcta
ctgaagaggggccagccactgccagccggagccctgagtagcctcaccgtgacccctgcc
tctgacccgctcatctccggtgcccccccttcttcctcctccgcaggcaagcgccacaca
gacctgcccttccagagtggtcttggtgcccagcatgagaatccccactggggagcctta
ccaccagtcactgaccgcagcagcagcaccaccagtagtagctgggatcaagtgatcatc
gacgggagcgacaccgaggcctggccctccatcagtcgcagcagcgtcagccgaccagcg
aatcctccagaatgtgccacagccgctgactgtacgaacccagagaccagcagctacatg
agcatggccgcgggggctactagccagcaggcccactacccatcctctctcaaagctaac
gtagctaacgtagcaagcatgatgcagcctagcggtggccagggagttggagccatcggc
agcaggggctggggctccggaccaggccccatccccatgggccccactgaggggagccaa
acccgacggccttgggcccaacctgggtcggagtggaggagcacccagctggaattccca
gccagctttagcctgaacctgaaccccaacgccaacccctcggcctggcccgtgctgggg
caagagggttggaggtggccagaaccccgcctcactaccacccaacggtatcctgggcaa
tgggagcctgggaggggacgagaacaacagcagcagcacctggggaggatgatgagccct
gatgccccgtcctccaataagaatgtgtctttcagcagcatggaacaccccaaccttaac
actgacggacaaaacagccaccacactaagcagcccctcagccccatccacgggctgccc
ggctggggaggccagtcccctactgagtcctcccagctcaacggagatgcagggagctct
gtctggggcaacgaagacacaaagacacccgctaactcctccaagaactcaggctgggac
tcagcaccctccggaggcatgtccggctggggccactctggcagcggaggaggcggaagt
ggcagtggagaaggaggctggggaggagactgggggaagcactccagtggtggaggagag
gtcaaaggaggctgggattcctcagatggcccagcccaggaccagcaggtgagctcctgg
ggccagccaaccccggccccggctagtgagggtagcgggagcggtggcagcgaggggcgc
atccatcgcagggatcagactggcagcgaggacggaggtccccctcccctgcctcggcag
gacctggacccccgtgtgctctgcaacacaggctggggccagacgcccgtccgccagcac
acctcctgggagatggaggagcagcgtgccgccaacgataggaagaccagcgagatgagg
ggaggcggtggaggggacacatggaggggctccaacagcccctcttctggatccccaccg
gacccccggaacgggggagccaaccccagcctgggaccatctcagaggccaggctcaggg
ggccccggaggcaagagtgagggcccttcaggctggggaggccctccaccctcaagctgg
ggggagcagcctgtcaacaaggcccccaacggttccgtcagtggctggggggaccccatg
gcccaaggccccaataccacaaacaatggcccaaagagtggaggtcaatcctggggtgtc
cctgaggagaagtcctcccctacctgggacgacgggccagccaagacccagcagaaccaa
ccccagagctggggagaggggcccaagtcctcctcccacggctggggctccggccacgga
agtggatccaatggatccaacggctccaacagcggagagtggagagaaccggccgaggtg
aagaagaatgggtcctccagccacatgtgggaaggagaaggaggaaatggacgaggagga
gggtggaaggacagccccagagggggtggaggaagtgggggcggctgggggtcgaagcct
gcccctgctgttggtggctggggggagactcagaaccagcatcccaacggcccagcacca
ggatggggctccaagccccaggaatgccccagcggcccagcaccaggatggggctccaag
ccccaggaaagccccagcggtcaggcaccaggatggggctccaagccccaggaaagcccc
agcggcccagcaccaggatggggctccaagccccaggaaagccccagcggcccagcacca
ggatggggctccaagccccaggaaagccccagcggccctgcaccaggatggggctccaag
ccccaggaaagccccaacggcccggcaccaggatggggctccaagccccaggaaagcccc
aactgcaatagtggaggaggtggaccaggaggaggcagcatggggtcctggggcggccct
gcatctgtaaggcagagttccaaccccggctgggggccggggagctccggagccaaaccc
gacccagcgatggagcccactggctgggaggaaccctctcctccctccatccgccgcaag
atggagatcgatgacggcacgtccacctggggagaccccagcgcctacaacaagactgtg
aatatgtgggaccgcaacaaccccactggaggtaacggtaaccaagggaacaaccccacc
cagccgccgaccagcaagagtagcggaggcttgaccgtcaacaacagccacaacaaccac
tcctccgtcccccctagcaacaacaatcaccaccacatgaaccaccaccacctgcaccac
ggacagcccctgccacacagccagcaccacggcaacaacaatggatccgccaacaccgcc
gccccgcaccagggcggaggaccccagggcagaccacctatggccaacccaggctggggg
gagctgcccagtgtccagcagcccaagccagagccggcgtggggggagcccgctggcccc
tctcctgcagtggacaatggcacctctgcctggggcaaaccccctggtgttcctggaggc
tggggagatggggggcatgagcccaatggaccctacaggaggggaaacaacggaccctct
ggacctacaccctgcaagccagccctcaaatctatgcaagacggttggggaggcgggagg
gaggaggagatgggcatgtcttctggccaatgggatgctgatgccggagacgtgtggaac
agccccgcctcccaggagaacaactcctcctgtaactcgtggggccagccacccaagaag
ggcccgcccaagggcaagatgggcaaccagccagacgaagcctggatcatgaaccgtctc
atcaagcagctcactgacatgggtttcccgagggatcctgctgaggaggctctgaagagc
aacaacatgaacctggaccaggccatgagtgctttgttggagaagaagactgaactggac
aagcgaggcatgggcatgtcagattacaacaacgggatgaacaagccgttgggttgccgt
cctcaggccctctccaaagacccctcctcggaccgcagcccattcctagacaaggacggt
ggtctgtcagatgacgcccccccctcaccgtttctgccttctcccgtcagcctgaagctc
cccctggtcaacaacctgcagcctgggctgaccctgggctccccggggctcaacatgcag
aacttaaacaacagacagatgcagagtggaatgttgggcagtagtggagcagcactatcc
cgggccatgcagcagccgcctcctcagccgccagtgccgcctctcggctcctcccagcct
agtctacgcgctcaagtgcctcagtttctcacccctcaggttcaagcacagctcttgcag
tttgctgcaaaaaacattggtctgaaccctgcacttttaacctcaccaataaaccctcaa
caaatgaccctgttgtaccaacttcagcaactgcaaatggcgtaccagcgtttacaaatc
cagcagcagatgatgcaagctcagcgcaacgtctccggtcccatcagacaacaagagcag
caagttgcacgtacaatcaataacatgcagcagcagatccaacagcaccagcgtcagctg
taccaggccctgctgatgaagcagcagccccccggctctcactcctcctcaggcctgcac
cccggccaaggcaaatcagccctggactcattcccaggccacccccaggcaccgggcctc
tccgacctgcacaccaaagagccgcattcttctcccagctcctacagcccctaccccctc
tctggactcaatccaaacatgaatgtaaactgcatggaggtggggggcctgtccatgaag
gagcctccccagcctcagtcccgtctgtcccagtggacccaccccaactccatggacagc
ctgtctggaaactcatcccacatggaggccaacctcaataagcacgtgatgaaacgctgg
ggccagggaccgggaaagagccccaaggaccagatcaccaacggaacgaatatcaactgg
cccccagagttctgtccaggcgtgccctggaagggcctgcagaacattgaccctgagaac
gaccccaacatgaccccaggaagtgttcccagcggccccaccatcaacaccaacatccag
gacgtcaaccgctacctactccgtgaccgcagcggaggctcctcccctccttcaccgcct
cagaacggtgctctgcccccctccgtggactggccagtcagtggctgctacactagctct
ttcagtctgtcctccccggatgaggagagtgcaggtaaactatctgacatgaagtccacc
tggtccccggggcccatctcccacccctcccaggcctctctgtcccatgagctgtggaag
gtcccccaggggccccgcaacaacacagccccctccaggccacctccgggcctcaccaac
cccgccaagccctcctccacctggggaggaaactccctgggcctggcccaaggctggagc
agctcatacacctcagagggcaccacctggagcacagacagctccaacaggaccagtagc
tggctggtactgaggaacctcaccccccagatagacggctccaccctgcggacgctgtgc
atgcagcacggccccctcatcacattccacctcttcctgacccagggaaacgctgtggtg
cgatacagctccaaggaggaggctgccaaggcccagaagtccctgcacatgtgtgtgctg
gggaacaccaccatcctggcagagtttgccggggaggaggaggtgaaccgctactttgca
caaggccagcagcagcagcttccgcccaccactagctggcagcctaaccccggcaccaat
cagacgcgcatgggcggaggctcgcaacagcacgccattggccatcactggagtggcggc
cttgggggaggagccaagaccggtggagacctgctgtgggggggcgtgccccagtactcc
agcctgtgggggccccctagtggcgatgatagtcgcggcgttatcgggagccccaacccc
attaacacgttgttgccaggcgacctgctgagtggagagtccatgtag
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integrated database retrieval system
