Oncorhynchus gorbuscha (pink salmon): 124003254
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Entry
124003254 CDS
T07892
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124003254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124003254
03036 Chromosome and associated proteins [BR:
ogo03036
]
124003254
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124003254
Coactivators
SAGA/TFTC/STAGA complex
124003254
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
124003254
STAGA complex
124003254
TFTC complex
124003254
SAGA complex
124003254
SLIK complex
124003254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_WDR5
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
WD40_CDC20-Fz
TFIID_NTD2
Beta-prop_WDR3_2nd
WD40_WDHD1_1st
WD40_Gbeta
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
Beta-prop_WDR36-Utp21_1st
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_WDR75_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_Aladin
Beta-prop_TEP1_C
Beta-prop_RIG_2nd
Beta-prop_VPS8
WDR90_beta-prop_4th
Beta-prop_WDR41
Beta-prop_IFT140_1st
Beta-prop_EIPR1
Beta-prop_Vps41
WD40_RFWD3
Beta-prop_HPS5
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_DCAF12
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
Tricorn_2nd
WD_LRWD1
LisH_PAC1
DUF4431
PROPPIN
LisH_TPL
Beta-prop_ACSF4
RAB3GAP2_N
VID27
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
124003254
NCBI-ProteinID:
XP_046167307
LinkDB
All DBs
Position
LG18:complement(8251840..8259627)
Genome browser
AA seq
749 aa
AA seq
DB search
MAAVQDGQLNMEVEKDIKTEITNDGSGNINANSSSPGSTSSGGKSKSPAGSGEDQQTLLA
VLQFLKRNKLTESVDILRREAGLSADADDSPVSDSAGAGSGGVPSVGADGGDANSLLSRV
SIATPVAPPTTAPPKVVAASGGEDQPDVNVVLSAYSQQGDPVLYPLYYNGLKKFIESVLD
CHRAELSQVFYPLFVHMYLELVYNNHENEAKQFFEKFSGDQECYYEEDLRILFSMSKKEH
MKGNETMLDFRTSKFVLRISRDSYQLLKRHLQERQNNQIWNIIQEHLYIDIFDGMPRSKS
QIDAMSGSLAGEGKRDANKAKVFYGLLKEPEIEVPLDDEDEEAENEEGKPKKKKPKKDSM
GSKSKKQDPNAPQQTRIPLPELKDSDKLDKIMNMKEATKKIRLGPDNLPSICFYSFLNAY
QGLTAVDFTDDSSLIAGGFADSTVRVWSVTPKKLRRVKSAADLSNIDKESDDVLERIMDE
KTASESKILYGHSGPVYGISFSPDRNYLLSSSEDGTVRLWSLQTFTCLVGYKGHNYPVWD
TQFSPYGYYFISGGHDRVARLWATDHYQPLRMFAGHLADITCTLFHPNSNYVATGSADRT
IRLWDVLTGNCVRILTGHKGPIHSLAFSPNGKFMASGATDGRVLLWDVGHGLMVGELKGH
TDTIYALKFSRDGEILASGSMDNTVKLWDTLKAFDDVELDDFTAATGHIHLPENSQELLL
GTYMTKSTPVIHLHFTRRNLLLAAGAYNP
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgtgcaagatggtcagctcaatatggaggtcgaaaaagacataaaaacagaa
ataacaaacgatgggtctggaaacatcaatgcaaactcttcgtcacccggttctacgtct
tcaggcggtaaatcgaaatctccagcgggatcgggtgaagatcaacagacactgctcgcg
gtgttgcaatttctcaagaggaataaattgaccgagtccgtcgacattttgcggcgagaa
gcgggcttatctgcagatgcagatgattcccctgtatccgattcggcgggagctggatcg
ggtggcgtcccaagtgtcggtgctgatgggggggatgccaactctctcctcagccgagtg
tcaatcgccacccccgttgcacccccgaccaccgcacccccaaaagtggtggcagcatca
ggtggggaagaccaaccagacgtcaacgttgtcttgtcggcctatagccagcagggggac
cctgtcctctacccactctactataacggcctgaagaagtttatagagtctgtcctggac
tgccacagagctgaactctcccaggtcttctacccactgtttgtccacatgtacctggag
ctggtctacaacaaccacgagaatgaggctaaacagttttttgaaaagttcagcggagac
caggagtgttactacgaggaggacctccgcatcctcttcagcatgtccaagaaggaacac
atgaagggaaacgagaccatgctggacttcaggaccagcaagtttgtcctccgcatctcc
cgagactcctaccagctgttgaagaggcacctgcaggaacgtcagaacaaccagatctgg
aatattatacaggagcatctctatattgatatctttgacgggatgcctcggagtaaaagt
cagattgatgccatgtcgggcagtctggcaggggagggcaagagagatgccaacaaagcc
aaggtgttctatggtcttctgaaggagccagagatcgaggtacctctggacgatgaggat
gaggaggcagagaacgaggagggcaaacccaagaagaagaaaccgaagaaggacagcatg
ggctccaagagcaagaaacaggaccccaacgcaccccaacaaactagaatccccctcccc
gagctgaaggactctgacaagctggacaagatcatgaacatgaaggaggccactaagaag
atccgtctgggcccagacaacctaccctccatctgtttctactccttcctcaacgcttac
cagggtctgacagcggtggacttcacagatgactccagtctgatcgcggggggcttcgct
gactccaccgttagggtgtggagcgtcacacccaagaaactacgccgggtcaaatctgca
gcagacctgagtaatattgataaagagtccgatgacgtgttggagaggatcatggatgag
aagacggccagtgagtctaagatcctgtacggacacagtggaccagtatacggcatcagc
ttcagccctgacaggaactacctgttgtccagttctgaggacggtacggtcagactgtgg
agtctgcagacgttcacctgtctggtggggtataaaggacacaactaccctgtctgggac
actcagttctcaccttatggttactactttatctctgggggacatgaccgagtcgctcgt
ctgtgggcgactgaccactaccagcccctgcgtatgtttgctggtcacctggctgacatc
acgtgcaccctctttcaccctaactccaactacgtggccacgggttcagctgaccgtacc
atccgcctctgggacgtcctgactggaaactgtgtccgcatcctcacgggtcacaagggt
cccattcattccctggccttctcccccaatgggaagttcatggcctcgggagcaactgac
gggagggttctactgtgggacgttggtcatggcctgatggtcggagagctgaagggacat
actgacaccatctacgccctcaagttcagcagggacggagagatactagcctcaggctca
atggataacactgttaaactgtgggatacactgaaggcctttgatgatgtggagctggat
gacttcaccgcagcaacaggtcacatccatctgccagagaactcccaggagctgttgcta
ggcacctacatgaccaagtccacccctgtcattcacctgcacttcacccgcaggaaccta
ctgctggctgcaggggcctacaacccatga
DBGET
integrated database retrieval system
