Oncorhynchus gorbuscha (pink salmon): 124003303
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Entry
124003303 CDS
T07892
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B-like isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogo04121
]
124003303
Enzymes [BR:
ogo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124003303
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
124003303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-RING_5
zf-C3HC4_4
Prok-RING_4
Sina_ZnF
zf-TRAF
PDZ_Tricorn
TRAF3_RING
zf-rbx1
U-box
RING_XB3-XBAT31
LemA
zf-RING_6
Motif
Other DBs
NCBI-GeneID:
124003303
NCBI-ProteinID:
XP_046167398
LinkDB
All DBs
Position
LG18:complement(62885464..63025605)
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AA seq
1064 aa
AA seq
DB search
MGFELDRFKGAVDPDFKCNLCNKVLEDPLTTPCGHVFCASCVLPWVIQKSSCPVKCQRIS
TTELNHVLPLKNLILKLDIKCDNHARGCEKVVKLHHLAEHAEMCDYSPAKCRNKGCKEVL
NLKDMDAHMRESCDYRPVGICDSGCGLMLIHKEQKLDTHCCLKAMKAHNSALHGKVVNLD
KEFKKQSLKSSKREKSLLAQLSAVHNELQMTALKYQKKFTEYSARIDSLTRTLAPPCKGG
ETKNLTAILHREGGSLGFNIVGGRPCADDHEGTSNEGIFVSKIVEKGPTDKEGGLQIHDR
IMEVNGKDLSKATHDQAVEVFRTAKEPIMVHVLRRAPRPKPSIPASDTEVVDISTQTDIT
FQHIMALTKLPASTPAVAVLEQYLMPEEHSPGHEYFDSNDFLEGMQQEMDREELEYEEVD
LYRTNIQDKLGLTVCYRTDDEDETGIYVSEIDPNSIAAKDGRIREGDRIIQINGIEIQNR
EDAVALLTSEENQNVCLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEQQHHQAMQFTAS
MLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRTDESTRNDESSEQENLGDDQTT
ASNTLGSCSRRKLTYSQDTLGSTELPFSSESFISADYDHADFLGIPADECERFRELLELK
CQVRSVGGPHGLYCQSARAGRAEEGAEEGVDKELELLNEELHSIELECLNIVRAHKMQQL
REQYRESWMLHNSGFRNYNTSIDARRHELSDINELPEKSDKDSSSAYNTGESCRSTPLTL
ELSPDNSLQRREENQGEAGAYSSTGLNNKIPKPLLSPVQEADGPGRIRPSSSKESECDLQ
AEEKERKLGESTHKLAQPRSLYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSLV
SRGDPVTPRDMLEPKKEWKVKIRSDGTRYITKRPIRDKLLKERALRIREERSGMTTDDDA
ISELKIGRYWSKEERKQHAVRAKEQKQRREFMKQSRADCLKEQASLDDDKKEPNIIELSH
KKMMKKRNKKIFDNWMTIQELLTHGAKSPDGTRVYNSLLSVTTV
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atgggattcgagttggatcggtttaaaggggctgtggacccagattttaaatgcaatttg
tgtaataaagttctagaagacccgctcactactccgtgtggtcacgtcttctgtgcaagc
tgtgtgctgccatgggttatccagaaaagcagctgccccgtcaaatgtcaaaggatctcc
acgacagagctgaaccacgttctccctctgaaaaacctgattctgaagctggacataaag
tgtgacaaccatgccagaggctgtgaaaaagtggtaaagctgcatcatctagcagagcac
gccgagatgtgcgattactcaccggccaaatgcaggaataaaggatgcaaggaggtgctc
aatctgaaggacatggatgcccatatgcgggaatcgtgtgattacagaccggtcgggata
tgcgacagtggatgtggcttgatgctcatccacaaagagcaaaaactagacacccattgc
tgtttgaaagccatgaaagcacataatagtgctttgcacgggaaggtggtcaacttggac
aaagagttcaagaagcaatcattgaaatcaagcaaaagagagaaatcacttcttgctcaa
ctctccgccgtgcacaatgagctacaaatgacagcgctgaagtatcagaagaaattcact
gaatacagtgcaaggatcgattcgctgactaggacccttgctcccccgtgcaagggcggg
gagacaaaaaacctcacagccatccttcatcgggagggaggttctctgggcttcaacatc
gtgggaggacgaccatgtgcggacgaccatgaaggcacttcgaatgaaggaatttttgta
tccaagatcgttgagaagggaccaacagacaaggaaggaggccttcagatccacgacaga
ataatggaggtgaatgggaaggacctgtccaaggccacccatgaccaggcagtggaggtc
ttccgcacggccaaggagcccatcatggtccatgtgcttcgccgggccccccgccccaaa
ccctctatccctgcctcagacaccgaggtggtagacattagcacccagacagacatcacc
tttcaacacatcatggccctcaccaagctgcctgcctccacccccgccgtggctgtgctg
gagcaatacctaatgcctgaggagcattcccctgggcacgagtactttgactccaatgat
ttcctggagggcatgcagcaggagatggatcgagaggagctggaatatgaggaagtggat
ttgtacagaaccaacatccaggacaagcttggtttgactgtctgctacaggactgatgat
gaggacgagactgggatctatgtcagtgagattgacccaaacagcatcgctgcaaaggat
ggcaggatcagagagggagatagaattatccagatcaatggaattgagatccagaaccga
gaggatgctgtggctttgttgaccagtgaggagaatcagaatgtgtgcctgctggtagcc
agaccagagatccagctggatgagggttggatggatgacgacaggaatgacttcttggat
gacctccacatggacatgctggagcagcagcaccaccaggccatgcagttcaccgccagc
atgctgcagcagaagaagcatgaggaggatggtggaacaacggacacagccaccctgttg
tccaaccaccacgagaaggatagtggggttggccgcaccgacgagagcacgcgcaccgac
gagagcacacgcaacgacgagagctctgagcaggagaacctgggggatgaccagactaca
gcctccaacacactgggcagctgcagccgcaggaagctgacctacagccaggacaccctg
ggcagcactgaactgcctttcagcagtgagtccttcatctctgcagactacgaccatgct
gacttcctgggtatccctgcagatgagtgtgagcgcttccgagagctcctggagctgaag
tgccaggtgaggagcgtggggggcccccatggcctgtactgccagagtgccagggccgga
agggccgaagagggggccgaagagggggtggacaaggagctggagctgctgaacgaggag
ctgcacagcattgagcttgaatgcctcaacatcgtccgggcccacaagatgcagcagcta
agggagcagtaccgtgagtcgtggatgctgcacaacagcgggttccgcaactacaacacc
agcatcgatgcgcgccgccacgagctctctgacattaacgaacttcccgagaagtcggac
aaggacagctccagcgcctacaacactggagagagctgccgcagcacccccctcaccctg
gagctgtccccagacaactccctccaaaggagggaagagaaccagggcgaggccggggcc
tatagcagcacagggctcaacaacaagatccccaagcccctgctgtctcctgtccaagag
gccgatggtcccggcagaatcaggccctcctcctctaaggagtctgagtgtgacctgcag
gcggaggagaaggagcgtaagctgggagagtctactcacaagctggcccagccccgctcc
ctgtacaaacacgcccacatcccggcccatgcccagcactaccagagctacatgcagctg
atccagcagaagtctgccgtggagtatgcccagagccaaatgagcctggtcagtctggtc
agccgcggtgaccctgtgacccccagagacatgctggagcccaagaaggagtggaaggtg
aagatccgcagcgatggcacacgctacattaccaagaggcccatcagggacaagctgctg
aaggagcgcgccctgcgtatccgcgaggagcgcagcggcatgaccacagacgacgacgcc
atcagcgagctgaagatcgggcggtactggagcaaggaggagaggaagcagcacgcggtg
cgtgccaaggagcagaaacagcgccgcgagttcatgaagcagagccgcgccgactgcctg
aaggaacaggccagcctggatgacgacaagaaggagcccaatatcattgagctgagccac
aaaaagatgatgaaaaagaggaacaagaaaatctttgacaattggatgactatccaggaa
cttttgacccacggtgctaagtcgcctgacggcacgcgagtgtacaactccctcctgtct
gtcaccacagtgtag
DBGET
integrated database retrieval system
