Oncorhynchus gorbuscha (pink salmon): 124003351
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Entry
124003351 CDS
T07892
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1-like isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ogo01009
]
124003351
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124003351
Protein phosphatases and associated proteins [BR:
ogo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124003351
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
124003351
mRNA cycle factors
Stress granule specific factors
124003351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
Staufen_C
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
124003351
NCBI-ProteinID:
XP_046167478
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All DBs
Position
LG18:38735619..38743115
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AA seq
707 aa
AA seq
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MSQFQCPGNLMSSPAASPMQQLSQPQPGYSIPCASGPLPSESASHPLLSSALPSGSATPF
SPTSTVSNMANPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLSLGDQHWE
AEGTSIKKAQHSAAATALAQTTLPKPSMRNNPRNNTVDCMTHTVELNAFCMKLGVKPMYK
PIDPYPGMRPSNFNYNIRAPGPYQRSMQQYYYPFPPVGPVLYHMELNIGGQQFHGKGRTR
QLAKHDAAAKALKTLQKEPILLQQLPETNGEDTENFNKSEISQVFEIALKRNMPVNFEVL
KEAGPPHMKSFMVCVAVGEFCGEGEGKSKKIAKKLAATAVLEELRRLPQLSPSVEKIQPA
RIKKKTKSIIKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYSMMTERGLPRRREFVMQV
TVCGHCAEGLGPSKKVAKRNAAEKMLELLGFKVPPPQPHKPALKTDEKVLQKKNGDGRKV
TFFEPGSVEESQSLGSKAENYRQPYLSHQQLPAGILPMVAEVAQAIGASPSLGHQNKGYG
PRTNPAKATLTAMIANELLYGGTSLTADTILKSQNSMAHLVPHGPLTRPSEQLSYLANVQ
GLQVDYKDFPKNNKNEFVSLINCSSQPPLISHGIGKDVESCHDMAALSILKLLSELDQQQ
HQQQTNDRTGSGPTSGCGKQDMDGCDSLIIKQANSSNLGQQTLDGTV
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagttccagtgtccgggtaaccttatgtcgagccctgctgccagccccatgcag
cagctgtctcagccccagccagggtacagtatcccctgtgcctcgggccccctgccctcc
gagagcgccagtcacccgctcctgagctcagccctgccctcgggctcagccactccattc
agccccacctccacagtatctaacatggcaaaccctaaagagaagacccccatgtgtctg
gtgaatgagttagcccgtttcaataagatccagcctgagtataagctgctctgtgagcaa
ggaccagctcattccaagatcttctcggtgcggttatcactgggggatcagcactgggag
gcagaggggaccagtataaagaaggcccagcactctgcagctgccacagccttggcccag
acaacactgcccaaacctagcatgcggaacaacccccgcaacaacacagtagattgcatg
acacacacggtggagctgaatgccttctgtatgaagctaggggtgaagcctatgtacaag
cccatagacccctaccctgggatgagaccatccaacttcaactacaacatcagggccccg
gggccttaccaacgctccatgcaacagtactactacccgtttcccccggtggggccggtg
ttgtaccacatggagctgaacatcgggggccagcagttccacgggaaggggcgcacgcgg
cagcttgccaaacatgacgccgctgccaaggcactgaagactctacagaaagagcccata
ctgctgcagcagctgcctgagacgaatggagaagacacagagaacttcaataaatcagaa
atcagccaggtgtttgagatcgcactgaagaggaacatgcctgtcaactttgaggttctg
aaggaggcaggcccgcctcacatgaagagctttatggtgtgtgtggcggtgggcgagttc
tgtggcgagggcgagggcaagagtaagaagatcgctaagaagctggcagctacagccgtg
ctggaggaactgaggagactgccccagctgtcccccagcgtggagaagattcagccagca
cgcattaagaagaaaaccaagtccattattaagctgcagaccagtccagagtatgggcag
ggcatgaaccccatcagcagactggctcagatccagcaggctaagaaagagaaggagcca
gaatacagcatgatgacggagagggggctgcccagacgcagggagttcgtcatgcaggtg
actgtgtgtggccattgtgcagagggcttaggccccagtaagaaggtagcgaagaggaac
gcagcagagaagatgcttgagcttctaggttttaaagtgcctccgcctcagccccacaaa
cctgcgctcaaaacggacgaaaaggtcctgcagaagaaaaatggagatgggaggaaagtg
accttcttcgagccgggctctgtagaagagagccagtcgctgggctccaaggcagagaac
taccgccagccctacctcagccaccagcagctcccagcaggcatcctgcccatggtggca
gaggtggcccaggctataggggccagccccagtctggggcaccagaacaagggttacggc
ccccggaccaaccctgccaaggccaccctgacggccatgatcgccaacgagctgctgtac
ggtggtacctccctgaccgccgataccatcctgaagagtcagaacagtatggctcatcta
gtacctcacggacccctgaccagaccctccgaacagctcagctacctagccaacgtacaa
ggtctacaggtggattacaaagacttccccaaaaacaacaagaatgaatttgtatcgctg
atcaactgctcctcccagccgcctcttatcagccacggcattggcaaggacgtggaatcc
tgtcacgacatggcggccttgagtatcctgaaattactgtcagagctggaccagcagcag
caccagcagcagaccaatgacaggacagggagcggaccaacctctgggtgtggcaaacag
gacatggacggctgcgactctctcatcatcaaacaggctaactcaagcaacttgggacaa
cagactctggatggcactgtgtag
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