Oncorhynchus gorbuscha (pink salmon): 124003690
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Entry
124003690 CDS
T07892
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04510
Focal adhesion
ogo04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124003690
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124003690
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
LAMB1
F5_F8_type_C
EGF_Teneurin
ATG17_like
Motif
Other DBs
NCBI-GeneID:
124003690
NCBI-ProteinID:
XP_046168169
LinkDB
All DBs
Position
LG02:49218120..49256309
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AA seq
1790 aa
AA seq
DB search
MFIFQIATMMLSAGSCVLAQVGIPEFSDVCTEGSCYPATGDLLIGRAHQLSTNSTCGLHQ
PERFCIVSHLQDEKKCFLCDSTNVYVKSVVNTTTGHRVENVVTTFAPNRLKTWWQSENGL
EKVTIQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKNWQVYRYFAYDCAAAYPAIS
PGPMQKVDDIICDSHYSDIEPSTEGEVIFRVLDPAFRIEDPYSPRIQNMLKITNLRVKFT
KLHTLGDNLLDSRMEIKEKYYYAVYDMVVRGNCFCYGHASECAPVDGAGAGDGVEGMVHG
HCMCNHNTMGLNCEKCQDFYHELPWRPAKGRNTNACKKCNCNQHSGSCHFDMAVYVSTGN
VSGGVCDECQHNTVGHNCEQCKPFYYQHPERDIRDPSICEPCNCDPVGSLNGGVCDRMTD
VSSGLITGQCRCKPNVEGERCDQCQQAHYGLGDHPLGCLACTCNTLGTVPGGSPCHTDSG
DCFCKSLVTGRDCDQCMPQHWGLSNDMDGCRPCDCDLGGALNNDCSQETGQCACREHMFG
RRCDQVESGFYFIALDHYTYEAEDAKFGPGLTVVQRPRPQDRSPTWTGIGFVNVPEGAYL
EFSIDNIPHSMEYDILIRYEPQLPDQWEEVLMTVMRPSLISADSRCANTMPDDDNQMISL
HPGSRYMVLPRPVCFEAGMNYTVRLSLPLYSALSDVQSPYTLIDSIVLMPHCKNLEIFTG
SVGGDVATNSAWDTFQRYRCLENSQSVVKTPSTDICRNFIFSVSALLHRGAKACQCDPQG
ALSTVCAASGGQCQCRPNVVGRNCDKCAPATFLFGPSGCRPCDCNPQGSEDAFCHEATGQ
CVCIPGAYSRQCDRCLPGHWGFPNCRLCTCNGHTEQCDPYSGKCLGCREQTTGHNCERCL
DGYYGDPVLGSGDHCRLCMCPDGPGSGRQFAGECYLGLDSPYQVFCVCSPGYRGARCEEC
APGYYGNPHENGGQCQPCQCNNNIDMLDQESCNVRTGECLKCLYHTEGQGCHGCKLGYYG
DALTQNCRKCVCNHLGTNPATCPAMGDCHCDLGSGQCQCLPNVVGQHCDQCAPDTWNMAS
ETGCDACDCDPNHSFGTSCNELSGQCSCKPGFGGKTCRECRELFWGEPEVKCNACDCDPR
GIAEQQCHKANGRCVCVEGVSGPRCDVCTRGYSGTFPYCERCHQCFADWDLVVGQLTNQT
HRLVNKVNTIKASGITGPYKHTIDNMEQSAGAIRTILAQNPATQPLSEIQQLLEQATDLM
EKMSNKLNLTEEALAQVSSDDNSTNTKLDSLKEDTQKLDRTVKDLLDQVEFIKNTDIRGA
TDSVTKYYQQSLAADARANASTSGPGNPVESSAILRQATEDKMNDTREEFHRRQEEHAKR
LDDLAGQLETLDLSELNVKTCGSPADASCVDSPCGGLSCVDFEGNRRCGGEGCGGLVTLA
NNAWQKAKDFDQEILTAMEEVDKLAKMVSEAKVKADEAKMSAQNVLLKTNGTKQRVDQSN
EELRSLIRQIRDFLTEDAADLESIEAVANEVLAMQMPTTPAQLQTLTDEIRERVGDLAHV
ETILNQSSDDIQRAESLLEQARRVSKEATNVRDTAEMVKQVLEEAERAQSAAAKAIKQAT
TDIKGTNDLLTSVESETVDSEYKLNNATQRLLRLERDVTLLREKTLNTSLSSEQTEKDAE
SINKVAEQVKKDLDSELKDKYSTVEDLITQKAGGVANAKKRAELLQQEAKDLLLQASDKL
QLLKDLEKSYEDNQKTLEDKANQLVDLEKSIKELLQEISHKVTVYSTCLF
NT seq
5373 nt
NT seq
+upstream
nt +downstream
nt
atgtttatatttcaaattgcgaccatgatgctatccgcagggtcgtgcgtccttgcccag
gtaggcatacccgagttcagcgatgtatgcacggaggggagctgctacccggctaccgga
gaccttctcattggcagagcacaccaactctccaccaactccacatgtggcctccaccag
ccggagcggttttgtatcgtcagtcatttacaggatgagaagaaatgctttttgtgtgac
tccaccaacgtctacgtcaaaagcgtggtgaacaccaccaccggccaccgggtggagaac
gtcgtgaccacattcgcccccaaccgcttgaaaacctggtggcagtcagagaatggcctt
gagaaagtgaccatccagctgaacttggaggcggagtttcatttcacccacctcatcatg
accttcaagaccttccggcctgctgctatggtgatcgagcgctcggctgactttgggaag
aactggcaggtgtaccgctactttgcatacgactgcgcggcggcataccctgccatatcc
ccggggcccatgcagaaagtggatgacatcatctgcgattcgcattactccgacatagag
ccgtcgacagagggagaggtcatcttccgagttttggatccagctttccgtattgaagac
ccctacagccccagaatccaaaacatgttgaagatcaccaacctgagggtgaagttcacc
aagctgcacaccctgggagacaacctgctggactcccgcatggagatcaaggagaagtac
tactacgccgtctacgacatggtggtccggggtaactgcttctgctacggacacgcctcc
gagtgcgcccccgtcgacggggctggggctggggatggagtggagggcatggtgcatggc
cactgtatgtgcaaccacaacaccatggggctaaactgtgagaagtgtcaggacttctac
cacgagctgccctggagaccagccaagggacgcaacaccaatgcctgtaaaaagtgtaac
tgtaaccagcactcaggctcgtgtcacttcgacatggcagtttacgtctctacgggtaat
gtgagcggcggtgtgtgtgacgagtgccagcacaacaccgtgggtcacaactgtgaacag
tgcaagcctttctactaccagcacccagagagggacatccgcgaccccagcatctgtgaa
ccatgtaactgtgatccggtgggctccctgaacggcggggtctgtgacaggatgactgat
gtgtcatctggactgatcactggccagtgtcgctgcaaacccaatgtggagggagagcgc
tgtgaccagtgccagcaggcccactatggcctgggtgaccaccctctgggctgcctggcc
tgcacctgtaataccctggggacagttcctggagggagtccgtgtcatacagactcagga
gattgtttctgcaaaagcctggtcacagggagagactgtgaccaatgtatgcctcagcac
tgggggctcagcaatgatatggatggctgcagaccatgtgactgtgacctgggtggagcc
ctcaataacgactgttctcaggagactggccagtgtgcgtgtagagaacacatgtttggc
cggcgctgtgaccaggtggagtcaggcttctatttcattgccctggaccactacacctac
gaggccgaggacgccaagtttggacctggtttgacagtagtgcagagacctcgcccgcag
gaccgtagccccacctggacagggataggttttgtcaacgttcccgagggggcctacctg
gagttctccattgacaacatcccccactccatggagtatgacatcctcatccgctacgag
cctcagttaccagaccagtgggaggaggtgttgatgacagtgatgcggcccagtttgatt
tcagcagacagtcgctgtgccaacaccatgcccgatgacgacaaccagatgatatccctt
catcccggatcacgatacatggtgctccccagaccagtgtgtttcgaggcagggatgaac
tacactgttcgtctgagcctgcccctctactctgcactcagtgacgtccagtccccatat
acacttatcgactcgattgtgctgatgccccactgtaagaacctggagatcttcactggt
tctgtgggaggtgacgtggccaccaacagtgcctgggacacgttccagcgttaccgctgt
ctggagaacagccagagcgtagtgaagaccccgtccacagacatctgccgcaacttcatc
ttcagcgtatctgctctgctgcaccggggagctaaagcatgccagtgtgacccgcagggc
gccctcagcacggtgtgtgccgccagcggtgggcagtgccagtgtcgccccaacgtggta
ggcaggaactgtgacaagtgtgcccctgccaccttcctttttggacccagtggctgcaga
ccctgtgattgcaatccccagggctcggaggatgcgttctgccacgaggctacaggccag
tgtgtgtgtatccccggggcatacagccgtcagtgtgaccgctgtctgccgggtcactgg
ggcttccccaactgtcgcctctgcacctgcaacggtcacacagagcagtgcgacccctac
tccggaaaatgcctgggctgccgagaacagaccactggacacaactgcgagaggtgtctg
gatggttactacggcgaccccgtcctgggttcaggggaccattgtcggctctgtatgtgt
ccggatgggcccggaagcgggcgacagtttgccggtgaatgttacctcggtctggactcc
ccttaccaggtgttctgtgtctgcagccccgggtacagaggtgccagatgtgaggagtgt
gccccaggttactatggaaacccccatgagaacggtgggcagtgccaaccctgccagtgc
aacaacaacattgacatgctggatcaggagtcctgtaatgtcagaacgggtgaatgtctc
aaatgtctctatcacaccgagggtcagggctgccacggctgcaagctgggttactatgga
gatgccctcacgcaaaactgcagaaagtgtgtttgtaaccacctgggcaccaatccagcc
acgtgcccggcgatgggtgactgccactgtgatctgggcagtgggcagtgccagtgtcta
ccgaatgtggtgggtcagcactgtgaccagtgtgcccccgacacctggaacatggccagc
gagacgggctgcgacgcctgcgactgtgaccccaaccactcatttgggacttcctgcaat
gagctgagtggccaatgctcctgtaagcctggctttgggggtaaaacgtgtcgggagtgc
agagagctgttctggggagaacctgaagtgaaatgcaacgcatgtgactgcgacccgcga
ggcatcgccgagcagcagtgccacaaggccaacggtcgctgcgtgtgcgtggagggcgtg
tctggtccccgctgtgacgtctgcacccgtggctactctggcaccttcccctactgcgaa
cgctgccaccagtgcttcgccgactgggacctggtcgtgggtcagctgaccaatcagacc
cacaggctggtcaacaaggtgaacaccatcaaggccagcggcatcaccggaccctataaa
cacaccatagataacatggagcagagcgccggggccataagaactatcctggcccagaac
ccggctacacagccactgtcagagatacagcagctactggagcaggccacagatctaatg
gaaaagatgagcaacaagctgaacctcactgaggaggcgctggcccaggtatcatctgat
gacaacagcaccaacaccaaactggactcactcaaagaggacacccagaaactggatcgc
accgtcaaggatctgctggaccaagtggagttcatcaagaacactgacattcggggagcg
acagacagtgtcaccaagtactaccagcagtctctggctgcagatgctcgcgccaacgcc
tccactagtggcccaggtaaccctgtggagagctctgccattttacggcaagcaacagag
gacaagatgaacgacaccagggaggagttccacaggaggcaggaagaacacgccaagaga
ctggatgacctggcaggacaactggagacactggacctctcagaactcaatgtgaagacg
tgtggcagcccagctgatgcgtcgtgtgtggactctccgtgcggagggttgagctgtgtg
gacttcgaggggaacaggaggtgcggtggcgaagggtgcggcggtctggtcaccctggcc
aataacgcctggcagaaggccaaggactttgaccaggagatcctcacggccatggaggaa
gtggacaagctcgccaaaatggtgtcggaggccaaggtgaaggcggatgaggctaagatg
agtgcccagaacgtgttgctgaagaccaacggtaccaagcagcgtgtggaccagagcaac
gaggagctgcgcagcctcatccgacaaatcagagacttcctcacggaggatgcagcggac
ctggagagcattgaggcagtggccaacgaggtgctggccatgcagatgcccaccacacca
gcccagctccaaaccctgacagacgagatcagggagagagtaggagacctagcccacgtg
gagaccatccttaaccagagctccgacgacatccagagagccgagagcctactggagcag
gcacgcagagtcagtaaagaggcgacaaacgtgagggacacagcagagatggtgaagcag
gttctagaggaggctgagcgtgcccagagcgcagcggccaaggccatcaaacaggccacc
acggacatcaaaggcaccaatgacctcctgacctcagtggagtcggagacagtggactcg
gagtacaagctgaacaacgccacccagaggctgctgcggttagagcgggacgtcacgctg
ctcagagagaagacactgaacacctcactcagctctgaacaaactgaaaaagacgcagag
agcatcaacaaagtggctgagcaggtcaaaaaggatctggactcggagctgaaggataag
tacagcaccgtggaggacctgatcacacagaaggccgggggcgtggccaacgccaagaag
agggcggagcttctacagcaggaagccaaagacctcctgctacaggccagcgacaagctg
cagctgctgaaagatttagagaagtcgtatgaggacaaccagaagactttggaagacaag
gccaaccagttggtggatctggagaagtccatcaaagagcttctgcaggagatcagtcac
aaagtcactgtctacagcacctgtctgttttaa
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integrated database retrieval system