Oncorhynchus gorbuscha (pink salmon): 124003969
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Entry
124003969 CDS
T07892
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04510
Focal adhesion
ogo04512
ECM-receptor interaction
ogo04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124003969 (col2a1b)
04518 Integrin signaling
124003969 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124003969 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
124003969 (col2a1b)
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124003969 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
124003969
NCBI-ProteinID:
XP_046168623
LinkDB
All DBs
Position
LG18:complement(74191819..74321457)
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AA seq
1490 aa
AA seq
DB search
MFSFVDSRTVLLLVATHVVLFAVVKCQDEDQDVGSCMQDGQSYSDKDVWKPEPCRICVCD
TGTVLCDEIICEEIKDCPKPEIPFGECCPICVRDGEAPPSGDPGAKGQKGEPGDITDVVG
PRGPGGPLGPPGEQGPRGDRGDKGDKGSPGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGEAGEPGSAG
SLGPRGPPGPSGKPGDDGEAGKPGKGGERGPSGPQGARGFPGTPGLPGIKGHRGYPGLDG
LKGEGGAAGSKGESGAPGENGAPGPMGPRGLPGERGRPGPSGSAGARGNDGLSGPAGPPG
PVGPSGAPGFPGSPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGIGG
SKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGELGPAG
PQGALGPAGEEGKRGPRGEPGAAGPLGPPGERGAPGNRGFPGQDGLAGPKGAPGERGVGG
VSGPKGAGGDPGRPGEPGLPGARGLTGRPGDTGPQGKVGPGGAAGEDGRPGPPGPMGARG
QPGVMGFPGPKGANGEPGKGGEKGLLGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDMGVPGEGGAAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGSSGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
ASGKDGSRGLTGPIGPPGPAGPNGEKGESGPSGPSGAAGARGAPGDRGETGPPGPAGFAG
PPGSDGQPGAKGEQGEGGQKGDAGAPGPQGPSGAPGPSGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGAAGPSGPAGKDGPKGVRGDGGPPGRQGDAGLRGTAGSPGEKG
DAGEDGPSGPDGPSGPSGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGGSGDRG
PPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGSTGIKGDRGNTGPAGAPGSPGANGSPG
PVGPTGKQGDRGEAGAQGPAGPAGPAGARGMAGPQGPRGDKGEAGEGGERGQKGHRGFTG
LQGLPGPPGQSGDQGASGPAGPSGSRGPPGPIGPHGKDGTNGMPGPIGPPGPRGRSGETG
PSGPPGNSGPPGPPGPPGPGIDMSAFAGLSQPEKSPDPLRYMRADQASGNLRTHDAEVDA
TLKSLNNQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVYCNM
ETGESCVYPKPASIPKKNWWSSKSKAAKHIWFGETMNGGFHFSYGDESLTANTASIQMTF
LRLLSTEANQNLTYHCKNSVAYMDGATGNLKKAVLLQGSNDVEIRAEGNSRFTYSVMEDG
CTKHKGTWGKTVIEYRSQKTSRLPIVDIAPVDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgtttagctttgtggattcgaggactgtactgctacttgtagcaacccatgtcgttcta
ttcgctgtcgtcaaatgtcaggacgaagaccaggacgtaggcagctgtatgcaggacgga
cagagctatagtgacaaggacgtatggaaaccagagccgtgtcgtatttgtgtgtgcgac
acgggaactgtcctgtgtgatgaaataatctgcgaggagattaaagactgccccaaacct
gagatcccattcggagagtgttgccccatctgcgtgcgggacggggaagcccccccaagt
ggggaccccggagctaagggtcagaaaggggaaccaggagatatcacagatgtcgtagga
ccaagaggacctggaggccctttgggccccccaggagagcagggaccacgtggagacaga
ggagacaaaggcgataagggcagccctgggccccgtggcagagatggtgagcctggtacc
cccggtaaccccggcccccccggacctccaggacctaacggaccccctggccttggagga
aactttgctgctcagatggcgggaggattcgacgagaaggctggcggagcacagatgggc
gtgatgcaaggaccaatggggcctatgggtcctcgaggaccacctggaccttctggagct
cctggcccacaaggtttccaaggcaaccccggagaggctggagagcccggatcagctggc
tcgttgggtccccgtggtccacccggaccctctggtaaacctggagacgacggtgaggct
ggcaaacccggcaaaggtggtgaacgtggaccttctggtcctcagggagctcgtggattc
ccaggaactcccggtctgcctggaatcaagggccacagaggttatccaggtctggatgga
ctcaagggagagggtggagctgctggttctaagggtgagtctggtgctcccggtgagaat
ggcgctccaggaccaatgggaccacgcggtctgcccggtgagagaggtcgtcccggaccc
tctggttctgctggcgctcgtggtaatgacggtctgtctggccctgctggtcctcctggc
ccagtcggtccttctggtgctccaggcttccccggctctccaggttcaaagggagaagct
ggccccaccggtgctcgtggacctgagggcgcccagggaccccgtggagagtcaggaacc
cctggatctcccggacccgccggcgcatctggtaatcctggtactgatggtattggagga
tctaaaggatcagctggtgctcctggtatcgctggcgcgcctggcttccccgggccccgt
ggccctccaggaccccagggggccactggacctctcggaccaaagggaacatctggtgac
cccggtatcccaggtttcaagggtgaggctggacccaagggagagcttggaccagccggt
ccacaaggagcacttggccctgcaggagaggaggggaagaggggacccagaggagagccc
ggtgctgctggacctcttggacctcccggagaaagaggcgcccccggtaaccgtggtttc
ccaggtcaggacggtctggctggtcccaagggagcccctggcgagcgtggagtcggcggc
gtgtccggccctaagggagccggcggtgaccctggtcgccctggcgagcccggtcttcct
ggcgcaagaggtcttactggtcgtcctggagatactggtcctcaaggcaaagttggacct
ggtggtgctgctggtgaggatggtcgccccgggccccctggccctatgggagcccgcggt
cagcctggcgtgatgggattccccggacccaagggtgccaacggtgagcctgggaaggga
ggagaaaaggggcttcttggtgccccaggtctgaggggtcttcctggaaaggatggtgag
actggagctgctggaccacctggccctgcaggccctgctggagaaagaggagagcaagga
cagcctggaccttctggcttccagggtctgcccggacctcccggcccacctggtgagggg
ggcaagcccggtgacatgggtgttccaggagagggtggagctgctggtgccactggaccc
agaggtgagcgtggtttcccaggagagagaggaggtgctgggcctcaggggctgcaggga
cctcgtggtctgcctggaactcctggaactgacggacccaagggagcgatcggaccaggt
ggctcatcgggtgcccagggaccccccggtctgcagggtatgcccggagagagaggggcc
tcaggcatccccggacctaagggagacagaggtgacaatggagagaagggacctgagggt
gcttctggcaaagacggctcaagaggtttgactggtcccattggtcctcccggcccagct
ggtcccaacggagagaagggtgaatctggtccatctggaccttccggtgctgctggtgcc
cgtggtgctcctggagacaggggtgagaccggacctcctgggcctgctggcttcgctggg
cctcctggatctgatggtcagcccggagccaaaggagagcagggagagggtggtcagaag
ggagacgcaggtgcccctggaccccagggaccctctggagcacctggaccttccggacca
actggcgtttctggacctaaaggtgctcgcggtgctcagggaccccctggtgccactggt
ttccctggtgctgccggcagagtcgggccccctggtcccaacggtaaccctggtgctgct
gggccctctggccctgctggtaaagatggccctaagggtgtgcgtggagacggtggaccc
ccaggcagacagggagacgctgggctgcgtggaaccgctggatcccctggagagaaggga
gatgctggagaggatggcccctctggtcccgatggtccttcaggtccttcaggtcttgct
ggacagcgtggtattgttggtcttccaggacagcgtggggagagaggtttccctggcctg
ccaggaccctctggagagcctggtaaacaaggagctcctggtggaagcggagaccgtggg
ccccctggcccagtgggaccccctggactgactggacccgctggagagcccgggagagag
ggcaacgctggttctgatggaccccctggtagagatggatccactggaatcaagggtgac
cgtggtaacaccggtcctgctggtgctcctggctccccaggggctaatggttcccccggc
cctgtcggccccaccggcaagcagggagacaggggagaggctggagctcaaggacccgct
ggacctgccgggcctgctggagccagaggaatggctggacctcaaggaccccgtggagac
aagggtgaggctggagaaggtggagagagaggacagaaaggacacagaggattcactggt
ctgcagggtctgcctggacctcccggtcaatctggagaccagggtgcctctggacctgcc
ggaccaagtggatcaaggggacctcccggacctattggtccacatggaaaggatggtacc
aacggtatgcccggccccatcggaccacccggaccccgtggtcgctctggagagactggt
ccctctggtccacctggaaactccggtccccctggtcctcctggtcctcccggccctggt
atcgacatgtctgccttcgctggcctgtctcagcctgagaaatcccccgatcccctgagg
tacatgagggccgaccaggcctccggaaacctgaggacgcacgacgccgaggtggacgcc
acgctcaagtctctcaacaaccagattgagaacatccgatcccccgagggctccaagaag
aaccctgcacgtacttgcagagacctgaagctgtgccacccagactggaagagtggagag
tactggatcgaccctaaccagggctgcaccatagacgccatcaaggtctactgtaacatg
gagaccggagagtcctgtgtctaccccaagcctgccagcatccccaagaagaactggtgg
tccagcaagagcaaggctgccaaacacatctggttcggagagaccatgaacggaggattc
cacttcagctatggcgatgagagtctgacagccaacacggccagcatccagatgaccttc
ctgcggctcctgtccaccgaggctaatcagaacctcacctaccactgcaagaacagcgtg
gcctatatggacggggccacggggaacctgaagaaggccgtgctgctccagggctccaac
gacgtggagatcagagccgagggcaacagccgcttcacctacagcgttatggaggacggc
tgcacgaaacataaaggaacgtggggaaagacagtgattgagtacagatcccagaagacc
agccggctgcccatcgtggacatcgctcctgtggatattggaggagcggaccaagagttt
ggtgttgatgtcggcgcagtttgcttcttgtaa
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