KEGG   Oncorhynchus gorbuscha (pink salmon): 124004232
Entry
124004232         CDS       T07892                                 
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1
  KO
K10652  tripartite motif-containing protein 25 [EC:2.3.2.27]
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04622  RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    124004232
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ogo04121]
    124004232
Enzymes [BR:ogo01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     124004232
Ubiquitin system [BR:ogo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   TRIM/RBCC proteins
    124004232
SSDB
Motif
Pfam: SPRY PRY zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_2 zf-B_box zf-C3HC4 zf-C3HC4_4 zf-RING_5 ANCHR-like_BBOX U-box
Other DBs
NCBI-GeneID: 124004232
NCBI-ProteinID: XP_046168955
LinkDB
Position
LG18:16280915..16293384
AA seq 682 aa
MAEHMFSLMSLEDELSCSICLCAFDCPVTIPCGHNFCQACLLETWKDNYSCPQCRTHFTT
KPVLKKNTVLSAVVETFKMKSNKSDLPNEMGDLIKWDAVKMEPKEVVILCDTCMEAKAFK
TCLTCMASFCLEHVRPHHENPVFGAHQLNEPLGDLCDRICPDHHKLMEFYCVQHGRCICG
VCLQQVHKGCTFSNPDEQRALQESDLRGKLSLLDGKIDKNQTVISQMSDQQSKLKDSAAS
RKRALEDDYRQIRELLDRDEREALNTVDREQESGQTKLQNLIKKFNQNIVKLSAAKDGVN
SLLSRTQTVAFLQASVDMPAVVAFDPYTPKVNLDSKALAACHAYSAVLREHLTHVLKQPV
EARLQILKPAERFAPLLPNFYEMGGMPPQGHPRMPRSHSPGAPLRANQKKPPQDSNRERK
SDKKRDHKEWKEHKADKTQMVHRTLENSQKPANAPRESATPVPHTPRDHPRGQSAEPRPR
NMEDRGQASVPPSITSAAKRNDLLRYGTVLTLDPKTAHKRISLTENMTMASVSDEPTHYP
DGPARFSVCSQVLTSKGFSRGRHYWEVKMRSNNFTGIGLAYNSIDRKGPASRLGRNAQSW
CVEWFNVKLSAWHASSETVLQNPNPICVGVLLDCEEGTATFYNVQDRAYPFHTFVFQFAE
AVYPAFWLFSSGSSVSLCKLQS
NT seq 2049 nt   +upstreamnt  +downstreamnt
atggcggagcatatgttttccctcatgagtctcgaagacgaactgagctgtagcatctgc
ctctgtgctttcgactgtccggtgacaattccatgtggacacaacttttgccaagcgtgt
ctcctagaaacatggaaagacaactacagctgtccacaatgccggacccacttcaccacc
aaaccagtgctgaagaagaacaccgtcctcagcgctgttgtggaaacgttcaaaatgaag
tcgaataaaagcgacctccccaatgagatgggcgacttaatcaagtgggatgcggtcaag
atggagcccaaagaggtggttatcttgtgcgacacctgtatggaagccaaagcattcaag
acctgcctcacctgtatggcgtcattctgccttgagcacgtgaggcctcatcatgagaac
ccagtgtttggcgcgcatcagctgaacgagcctctgggcgacttgtgcgaccgtatctgc
cccgaccaccacaagctaatggaattctattgtgtccaacatggccgctgtatctgtggt
gtctgtctgcagcaggtgcataaaggatgtaccttctccaaccctgatgaacaacgggca
ctgcaagagtctgatttgaggggcaagttgagtctgctggatggaaagattgacaagaac
cagacggtcatctctcagatgagtgaccagcagagcaagttgaaggactctgcagccagc
aggaagagagcgctagaggatgactaccgccaaatccgggagctgctggaccgtgacgag
cgtgaggctctgaacactgtggaccgcgagcaggagagcggtcagaccaaactccagaac
ctcataaagaagttcaaccagaacattgtgaagcttagcgcagcaaaagatggcgtcaac
agcctgctcagtcggactcagaccgtggctttcctacaggcctcagttgacatgccggca
gtggtggcctttgacccctataccccgaaggtgaacctggactctaaggccttggcagcc
tgtcatgcctactctgcagtcctgagggagcatctcacacatgtactgaaacagcctgta
gaggccagactgcagatactcaaaccagctgagaggtttgctcctctgctgccaaacttc
tatgaaatgggaggcatgccaccacaaggtcatccgagaatgcctagatcccacagccca
ggagctcccctcagggcaaaccagaagaagcctccacaagattcaaaccgagagagaaag
tcggacaagaaacgagatcacaaggaatggaaagaacataaggctgacaagacacaaatg
gttcatcggactctggaaaattcacaaaagccagctaatgctcccagagagtccgccact
cctgttccacacacaccaagggaccaccccagaggacaatcagcagaacccagacccagg
aacatggaggaccgaggacaagcaagtgttcccccaagtatcacgtctgcagcgaaacga
aatgaccttctacgatatggcaccgttctcacccttgaccccaaaactgcccacaagcgc
atctccctgacagagaacatgaccatggcctctgtgtcagacgagcccacccattacccc
gatggccccgcccgcttctccgtctgcagccaggtgctcacttccaagggcttctcccgc
ggccgtcattactgggaggtcaagatgaggagcaacaacttcaccggcatcggcctggcc
tacaacagcatcgaccggaagggtccggctagccggctggggcgtaacgcccagtcctgg
tgcgtggagtggttcaacgtcaagctgtcggcctggcacgccagcagtgagactgtactg
cagaacccgaatccgatctgcgtcggcgtgcttttggattgtgaggagggaacggccact
ttctataacgttcaggaccgggcataccctttccatacgtttgtgttccagttcgccgag
gcagtgtacccggcattctggctcttctccagcggctcgtctgttagcctgtgcaagctg
cagtcttaa

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