Oncorhynchus gorbuscha (pink salmon): 124004232
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Entry
124004232 CDS
T07892
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25-like isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
124004232
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ogo04121
]
124004232
Enzymes [BR:
ogo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124004232
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124004232
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_2
zf-B_box
zf-C3HC4
zf-C3HC4_4
zf-RING_5
ANCHR-like_BBOX
U-box
Motif
Other DBs
NCBI-GeneID:
124004232
NCBI-ProteinID:
XP_046168955
LinkDB
All DBs
Position
LG18:16280915..16293384
Genome browser
AA seq
682 aa
AA seq
DB search
MAEHMFSLMSLEDELSCSICLCAFDCPVTIPCGHNFCQACLLETWKDNYSCPQCRTHFTT
KPVLKKNTVLSAVVETFKMKSNKSDLPNEMGDLIKWDAVKMEPKEVVILCDTCMEAKAFK
TCLTCMASFCLEHVRPHHENPVFGAHQLNEPLGDLCDRICPDHHKLMEFYCVQHGRCICG
VCLQQVHKGCTFSNPDEQRALQESDLRGKLSLLDGKIDKNQTVISQMSDQQSKLKDSAAS
RKRALEDDYRQIRELLDRDEREALNTVDREQESGQTKLQNLIKKFNQNIVKLSAAKDGVN
SLLSRTQTVAFLQASVDMPAVVAFDPYTPKVNLDSKALAACHAYSAVLREHLTHVLKQPV
EARLQILKPAERFAPLLPNFYEMGGMPPQGHPRMPRSHSPGAPLRANQKKPPQDSNRERK
SDKKRDHKEWKEHKADKTQMVHRTLENSQKPANAPRESATPVPHTPRDHPRGQSAEPRPR
NMEDRGQASVPPSITSAAKRNDLLRYGTVLTLDPKTAHKRISLTENMTMASVSDEPTHYP
DGPARFSVCSQVLTSKGFSRGRHYWEVKMRSNNFTGIGLAYNSIDRKGPASRLGRNAQSW
CVEWFNVKLSAWHASSETVLQNPNPICVGVLLDCEEGTATFYNVQDRAYPFHTFVFQFAE
AVYPAFWLFSSGSSVSLCKLQS
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcatatgttttccctcatgagtctcgaagacgaactgagctgtagcatctgc
ctctgtgctttcgactgtccggtgacaattccatgtggacacaacttttgccaagcgtgt
ctcctagaaacatggaaagacaactacagctgtccacaatgccggacccacttcaccacc
aaaccagtgctgaagaagaacaccgtcctcagcgctgttgtggaaacgttcaaaatgaag
tcgaataaaagcgacctccccaatgagatgggcgacttaatcaagtgggatgcggtcaag
atggagcccaaagaggtggttatcttgtgcgacacctgtatggaagccaaagcattcaag
acctgcctcacctgtatggcgtcattctgccttgagcacgtgaggcctcatcatgagaac
ccagtgtttggcgcgcatcagctgaacgagcctctgggcgacttgtgcgaccgtatctgc
cccgaccaccacaagctaatggaattctattgtgtccaacatggccgctgtatctgtggt
gtctgtctgcagcaggtgcataaaggatgtaccttctccaaccctgatgaacaacgggca
ctgcaagagtctgatttgaggggcaagttgagtctgctggatggaaagattgacaagaac
cagacggtcatctctcagatgagtgaccagcagagcaagttgaaggactctgcagccagc
aggaagagagcgctagaggatgactaccgccaaatccgggagctgctggaccgtgacgag
cgtgaggctctgaacactgtggaccgcgagcaggagagcggtcagaccaaactccagaac
ctcataaagaagttcaaccagaacattgtgaagcttagcgcagcaaaagatggcgtcaac
agcctgctcagtcggactcagaccgtggctttcctacaggcctcagttgacatgccggca
gtggtggcctttgacccctataccccgaaggtgaacctggactctaaggccttggcagcc
tgtcatgcctactctgcagtcctgagggagcatctcacacatgtactgaaacagcctgta
gaggccagactgcagatactcaaaccagctgagaggtttgctcctctgctgccaaacttc
tatgaaatgggaggcatgccaccacaaggtcatccgagaatgcctagatcccacagccca
ggagctcccctcagggcaaaccagaagaagcctccacaagattcaaaccgagagagaaag
tcggacaagaaacgagatcacaaggaatggaaagaacataaggctgacaagacacaaatg
gttcatcggactctggaaaattcacaaaagccagctaatgctcccagagagtccgccact
cctgttccacacacaccaagggaccaccccagaggacaatcagcagaacccagacccagg
aacatggaggaccgaggacaagcaagtgttcccccaagtatcacgtctgcagcgaaacga
aatgaccttctacgatatggcaccgttctcacccttgaccccaaaactgcccacaagcgc
atctccctgacagagaacatgaccatggcctctgtgtcagacgagcccacccattacccc
gatggccccgcccgcttctccgtctgcagccaggtgctcacttccaagggcttctcccgc
ggccgtcattactgggaggtcaagatgaggagcaacaacttcaccggcatcggcctggcc
tacaacagcatcgaccggaagggtccggctagccggctggggcgtaacgcccagtcctgg
tgcgtggagtggttcaacgtcaagctgtcggcctggcacgccagcagtgagactgtactg
cagaacccgaatccgatctgcgtcggcgtgcttttggattgtgaggagggaacggccact
ttctataacgttcaggaccgggcataccctttccatacgtttgtgttccagttcgccgag
gcagtgtacccggcattctggctcttctccagcggctcgtctgttagcctgtgcaagctg
cagtcttaa
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integrated database retrieval system