Oncorhynchus gorbuscha (pink salmon): 124004697
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Entry
124004697 CDS
T07892
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like isoform X1
KO
K08268
hypoxia-inducible factor 1 alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04137
Mitophagy - animal
ogo04140
Autophagy - animal
ogo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124004697
04137 Mitophagy - animal
124004697
04148 Efferocytosis
124004697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124004697
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
124004697
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GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_11
PAS_3
PAS
HIF-1
PAS_9
PAS_4
Motif
Other DBs
NCBI-GeneID:
124004697
NCBI-ProteinID:
XP_046169364
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Position
LG19:41954891..41977795
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AA seq
630 aa
AA seq
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MDTKEEPVAQRSGTDQRKVRSRDAARCRRSQETELFYELAHTLPLPRRVSADLDKAAIMR
VTLSFLRMHHLRSAGDTSEERVTDGDEDTMDGFYPRALAGFIMVMTEEGDMIYLGDSVDK
HLGIQQLELLGQSVYDFVHPCDQEELRDLLVPRPGVFKKKPVQQHTEMTFFLRMKSTLTV
RGRTVNIKSATWKVLHCTGHMRVFSSDEDSSPPAGSFMTVLCEPIPHPSSVEFPLDRSTF
LTRHSMDLRFTHCEGRVAELVGYEPEDLIGKSAYEFHHALDSDHVTKSLHILLSKGQVCT
SQYRFLAKSGGFVWAETQATVIYNNKTSQPEAVVCLNFILSVVEQADVVFSVEQTGCGLK
SDPVSEASEETLCDSDNSSSGELFQQLKENPEDLLQLAPVSGDPIVPLTDFAELSFSLPS
SPDSAPVFPQDLCTPELWTLLSPIFDKPTSSSPTPALIPIEELPIEDEVEKLFAVCPEEV
MQKEDQPEDVEVVDLDMLAPYISMDDDFLLSVQLPGIPDSPSPEPPTATRKRSHEQDEDM
PSQLMSQDKRLRHSVSPIEQELLLSYTLLDCLEDTDSPELELGPHPHRRSQLLTDRDPIL
GEAQGRCDTAALMRDLFLSRPPDPLTSSLT
NT seq
1893 nt
NT seq
+upstream
nt +downstream
nt
atggatacgaaggaagagcctgttgcacaacggtcgggtacggatcagcgtaaggtgcgt
tcccgggatgcggcacgctgccgacggagtcaggagacggagctgttctacgagctggcc
cacaccctgcccctcccccgcagagtctccgccgacctggacaaggccgccatcatgagg
gtgacgctcagcttccttcgcatgcaccacctccgctcagcaggggacacgagtgaggag
cgcgtcacagatggggatgaggacacgatggatgggttctacccccgggcgctggcaggt
ttcatcatggtgatgaccgaggagggggatatgatttacctgggtgacagcgtcgacaaa
cacctgggcatccaacagctggagctgctgggtcagagtgtgtatgactttgtccaccca
tgtgaccaagaggagctacgggatctcctggtgcctaggccaggtgtattcaagaagaaa
ccagtgcagcaacacacagagatgaccttctttcttaggatgaagagcactctgactgtt
agagggcgcactgtcaacataaagtctgccacctggaaggtgctgcactgtacaggccac
atgcgtgtgttctccagtgacgaggactcgtcaccccctgcaggcagcttcatgacggtg
ctgtgtgagcccatcccccacccgtctagtgtggagttccctctggaccgcagtaccttc
ctcactcgacacagcatggacctgcgcttcacacactgcgagggcagggtggcagagcta
gtgggatacgagccagaagatctgattggcaaatctgcctacgaattccatcatgccctg
gactcggatcatgtgaccaagagcctgcacattcttctatctaaaggccaggtgtgcacc
agccaataccgttttctggctaagagtgggggcttcgtgtgggcagagacccaggctaca
gtcatctacaacaacaagacctctcaaccagaggctgtggtctgtcttaactttatcctc
agtgtggtggagcaggcagatgtggtgttctcagtagagcagactggctgtgggctgaag
agtgatcctgtctctgaggcctcagaggagactttgtgtgacagtgacaacagcagcagt
ggagagctcttccaacagctgaaggagaacccagaggacctcctccaactggcccctgtc
tctggagaccccatcgtacccctcacagactttgcggagctgtcgttcagccttccatca
agccctgactccgccccagttttcccacaggacctgtgcacccccgagctgtggacgctc
ctctcacccatattcgacaagcccacctcatcatcaccaacaccagcactgatccccatt
gaggagctgccaatagaggatgaggtggagaagttgtttgccgtctgtccagaagaggtc
atgcagaaggaagaccagcctgaggacgtggaagtggttgatctggacatgctggctccg
tatatctccatggatgatgatttcctgctcagcgtccagctccctgggatccctgacagc
ccctccccagagccccccactgctaccaggaaacggagccatgagcaggatgaagacatg
ccctcccagctgatgagtcaggacaagagactgagacactctgtgtcccccatcgagcag
gaactgcttctcagctacaccctactggactgcctggaggatacagatagcccagagttg
gagctggggccacacccccacaggcggagtcaactgctgacggacagagaccccatcctc
ggggaagcccaggggcgatgtgacaccgcagccttgatgagggacctcttcttgtcccgc
ccacctgaccccctgacctcctctctgacttga
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