Oncorhynchus gorbuscha (pink salmon): 124005077
Help
Entry
124005077 CDS
T07892
Name
(RefSeq) rho guanine nucleotide exchange factor 12-like isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04270
Vascular smooth muscle contraction
ogo04625
C-type lectin receptor signaling pathway
ogo04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
124005077
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
124005077
09153 Circulatory system
04270 Vascular smooth muscle contraction
124005077
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124005077
Membrane trafficking [BR:
ogo04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
124005077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
NTS
Pept_S41_N_bact
PH
Motif
Other DBs
NCBI-GeneID:
124005077
NCBI-ProteinID:
XP_046169955
LinkDB
All DBs
Position
LG19:32951182..33023404
Genome browser
AA seq
1466 aa
AA seq
DB search
MSDTQSSITDRFPNKANRSSSILSKDHPPDKKPKSDRPSVSASHEFDPTDILVQKSDCVL
AEGRPESCGLVQRCVIIQKDENGFGLTVSGDNPVFVQLVKEDGAAERAGVQTGDRIIKVN
GTLVTHSNHVEVVKLIKSGSYVALTVLGRPPGLPQIPLLEGEAKVVFLRAQTGSSSVTSP
NSPGQPMGERPYSPHDRITSPLPIWEENNSVHNQKVHILQKMLSKEQEDLQAMKEEYSRN
PTPKLLKDIQEAKRHIPQLQGQLSKATGGAQDALRLGDGDDGSMVDMDHTPSSSSNELSW
SSSMMSPVLRGFASASPESLCQRDLLSYHSPKSTPRDSFNSCHSPDPEDTPDLDSLSPST
VSSPSLRFVSQIIGAEDDYFDSDQEQVNGQCSCFQSMELLKSRPAHLAAFLHHVVSQFDP
APLLCYLYADLCKQTNSKETRRVFMDFHNFFIDRGANLKVAVPESLSSDLDRRRTELIPE
ELNRQYVQMVQDTQLPDIQRNLEDFRQKRSMGLTLAEGELARLDTERVRDRVALERERAC
AENIITKIEDVLLTTQSTEEEKCTTMQYVILTYMKHLGVKVKEPRGLESKWVRINFLPKI
KKSIKTEKEGGEEKVKRTRFPSILGPPRRPSRVDPTSVGKAMDLNKPRPQKQLSQPCLEH
LEAGRLRASQSNEGSELIHSSPTNATSPTNSTTNNNASDGGSRDSEFVGTPNSAFPKLSE
GLGDLDSLEYTPNTHFDYSLSPYSLDQLQEEDRESGILEGTPKAIRRLDGLGSTEVQSED
DQGGTDSEHDPLNWQQLVGREVLAGLQPHEIKRQEVINELFYTERAHLRMLKVLDNIFYQ
KLTREGILPPADIKNIFTNLEDIVQLHVWISEQMVTIRKRNETSVIDQIGDDLLSWFSRG
EEEKIKQAVGTFCSNQPFALELIKSRQKKDSRFTSFMQEAESNRLCRRLQLKDIIPVEMQ
RLTKYPLLLENIAKYTDDTVEKDKVKKAGDCCRKILNHVNQAVKESENKQRLEDYQRRLD
LSSLKQTENPMISELKNLDLTKKKMVHEGPLSWKVNKDKTIELYTLLLEDILVLLQKQDE
RLILKCHSKNLSGTADTKHIFSPIIKLNAVLVRSVATDNKSFFVLSMSDNGAQIYELMAQ
TVSEQRMWQRQITQRADAMKVKPNSVIPLPQTDGERDGVEIITAGIAQLSKDPDRISSGS
SQSIDKEGCAASGGEMQTSLPDANPFEGLKPEEEPNRDEGLYGDPDLADRLPFRMAVEGL
SESDSVGFSPSRADDALKTLSALKQVLVTQLMSQEDGEGAGRSSAGGGRLLRTTSLRTPV
DSRARVAVQNGSGRCTQASHPEDPAQDLVSGDTGFFESPEDYAGYLVLEGYGGSGESSTD
DDLQATGKQLSASRGCGAGDSGISLRFSSASQAGSISSFSRQVLSHIRNLQTNLNHLKEV
EAKYHSLLRQRPARLSTDMDDNKDKR
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacacacagtccagtatcactgataggtttcccaataaagcaaacagaagcagt
agcattctcagtaaagaccacccccctgacaagaaacccaaaagtgatagaccgtcagtc
tccgcttcacatgagtttgaccctacagacattctggtgcagaagagtgactgtgttcta
gcggagggacggccagagtcctgtgggcttgtccagcgatgtgtgatcattcagaaagat
gagaatggctttgggctgacggtgagcggagacaaccctgtgtttgtgcagctcgtcaaa
gaggatggtgctgcagagcgtgcgggtgtacagacaggtgaccggatcatcaaggtgaac
gggaccctagtaacacattcaaaccacgtggaagtagtaaagctcataaaatcgggctcc
tatgtggccctcacagtgttggggcgaccccccgggttgccccagatcccccttttggag
ggcgaggctaaggtggtgttcctgcgggcccagacagggtcgtcctctgtcacctctcca
aactcccctggacagccaatgggggagcgaccatacagcccccatgaccgcatcacctct
cctctaccgatatgggaagagaacaacagcgtacacaaccaaaaggtgcacattcttcag
aagatgttgtccaaagagcaagaagatttgcaggcaatgaaggaggagtacagcaggaat
ccgacgcccaaactactgaaggacatccaggaagccaagaggcacattccacagctgcag
gggcagcttagtaaggccactgggggagcacaggatgccctgcgattgggtgatggagat
gatggaagcatggtagacatggaccacacaccttcctccagtagcaatgaactctcatgg
agcagcagtatgatgtcccctgttctccgtggttttgcatctgcctccccggagagcctg
tgccaaagagacttgttgtcctaccacagcccaaagagcacgccccgagacagcttcaac
tcctgccactcccccgacccagaagacactccagacctggactccctgtccccctccact
gttagcagcccctccttacgcttcgtctcccagatcatcggagctgaggacgactacttt
gactctgatcaggaacaggtcaatggccagtgcagctgtttccagagcatggagctgctc
aagtccagacctgcccacctggcagcgttcctgcatcacgtcgtctcccagtttgaccct
gcaccgctgctctgctacctctacgctgacctgtgcaagcagaccaactccaaagaaacc
agacgggtgttcatggacttccacaacttctttatcgaccggggagctaatttaaaagta
gctgttcccgagtccctatcctctgaccttgaccggaggaggacggagctgatccctgag
gagctgaacagacagtacgttcagatggttcaggacacccagctccctgacatccagagg
aacctggaggactttaggcagaagcgcagtatgggtctaaccctggcggagggggagctg
gcccggctggacacggagcgcgtcagagaccgggtagcactggagagagaacgtgcttgt
gctgaaaacatcatcaccaagatagaggatgttctgttgacaactcaatccacagaggag
gagaaatgcactactatgcagtatgtcatcctcacgtacatgaagcaccttggcgtgaaa
gtcaaagagccacgcggcctagagtccaaatgggtccgcatcaacttcctccccaagatc
aagaagagcatcaagaccgagaaggagggaggggaggagaaggtgaaacgcaccaggttt
cccagcatcctcgggcctcctcgccggcccagccgagtcgaccccacgtccgttggcaag
gccatggacctcaacaagccacggccccaaaagcagctgtcccagccctgcctggagcac
ctggaggcgggtcgcttgagggccagtcagtccaatgagggctccgagctcatacattcc
tccccgaccaacgccacctctccaaccaacagcaccaccaacaacaacgcctctgacgga
ggcagcagagactctgagtttgttgggacccctaactctgccttccccaaactgagtgag
ggtcttggagacctggacagtctagagtacactccaaacacacattttgactacagcctg
agcccctatagcctggaccaactacaggaggaggacagggagagtggaattcttgaagga
acacccaaggctatcagaaggttggatggccttggttctacagaggtgcagagtgaagat
gaccaaggaggcactgactccgagcatgaccccctcaactggcagcagctggtgggacga
gaggtcctggccggactccagccccacgagatcaagagacaggaagtcattaacgagctg
ttctacactgagagggcccacctgcggatgctcaaagtgctggacaacatcttctaccag
aagctcaccagagagggcatactgcctcctgccgacatcaagaacatcttcaccaacctg
gaggacattgttcaactgcatgtttggatatctgagcaaatggtaacaattcggaaaagg
aatgagacgtccgtaatcgaccaaataggagacgacttgctgtcctggttcagcaggggc
gaggaggagaagatcaagcaggcggtgggcacattctgcagcaaccagcccttcgctctg
gagctcatcaagagcaggcagaagaaggactcgcgcttcacctccttcatgcaggaggct
gagagtaaccgactgtgtcgaagactccaactgaaggatatcattcccgtggagatgcag
aggctcaccaagtaccctcttctactggagaacatcgccaagtacacagatgacaccgtg
gagaaagataaggtaaagaaggcgggcgactgctgcaggaagatcctcaatcatgtcaac
caagcggtgaaggagtctgaaaacaagcagaggctggaggactaccagaggcggttagac
ctctcgtctctgaagcagacagagaaccccatgatttcagagctcaagaacctggacctg
accaagaagaagatggtccatgagggaccactgtcatggaaggtcaacaaggacaagact
attgagctgtacaccctgctcctggaggacatcctggtgctgctgcagaagcaggacgaa
cggctcatcctcaagtgccatagcaaaaacctgtctggcaccgccgacaccaagcacatc
ttcagccccatcatcaagctcaatgcggtgctggtgcgctctgtggccacagacaacaag
tcgttctttgttctctcaatgtcggacaacggggcccaaatctacgagctgatggcccag
accgtatcagagcagagaatgtggcagcggcagatcacccagagagcggacgccatgaaa
gtgaagccgaacagcgtcatccccttacctcaaacggatggagagagagacggtgtggag
atcatcactgcaggcatagcccaactcagtaaggacccggaccgcatctcctctggaagc
agccagtctatagataaagagggctgcgctgcgtctggaggcgagatgcagacctctctc
ccagatgccaacccatttgaaggactcaagccggaagaggagcccaaccgggatgagggg
ctttacggggatccggaccttgcagataggctgcccttccgcatggccgtagaagggctc
agcgaatcggacagtgtgggcttcagtccttcgagagctgacgatgccttaaagacattg
tcagcgctgaagcaagtccttgtgacccagctcatgtcacaggaggacggcgaaggcgcc
gggcgctcctccgcagggggcgggcgtcttctcaggaccacgtccctgaggacccccgtg
gacagccgggcccgggtggcggttcagaacggctcagggaggtgcacccaggcaagccac
cctgaggacccggctcaggacctggtgtctggggacacgggcttctttgagtcccccgag
gattatgcagggtacttagtcttggagggctacgggggctcgggggagagcagcacggac
gacgacctccaggccacggggaagcagctgagcgcctcgcggggctgcggggcaggagac
tctgggatcagcctgagattctcctctgcctcacaggcaggcagcatctccagcttcagc
cgacaggtcctgtcccacatccgcaacctgcagaccaacctcaaccacctcaaggaggta
gaggccaagtatcacagtctactacgccaaaggccggccaggttatcaacagacatggat
gataacaaagataagagatag
DBGET
integrated database retrieval system
