Oncorhynchus gorbuscha (pink salmon): 124005124
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Entry
124005124 CDS
T07892
Symbol
cnot3a
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 3a
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124005124 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124005124 (cnot3a)
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124005124 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124005124 (cnot3a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
124005124
NCBI-ProteinID:
XP_046170039
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Position
LG19:4852968..4863616
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AA seq
896 aa
AA seq
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MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVDNRKVIETQMERFKVVERETKTKAYSKEGLGLALKVDPAQRE
KEETGNWLTNTIDTLNMQVDQFESEVESLFIQTRKKKGEKEKQDRIEELKRFIERHRYHI
RMLETILRMLDNDSVQVDSIQKIKDDVEYYMESSQDPDFEENEFIYDDLDLEDIPAALVA
TSPTGLGNIEDEMFLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDRDVSQSP
AKNGTSSLLLSFSSSANSGSSSSSSSLVSMAAVVGGNPGVPTSNSLIGSFSSAVQQHQPQ
PPQQPVLQPLQQPQQPQTKPCTPSPPSHPLLSTAPSLPTPTTPISASPNSLPQVSPGHIL
NSSLGLGLGLGKVGMTGTSSANSMSGLGLTGMSASLNTMAGLLSGSTHAPYAQAASLGGL
GLSTTTQSSVTVESSSIPTSCSSGVTTNGAGTGLGLLGSSPAHGSLTGGILGLVPGQSVI
PGPPLIPLSPVGAAPGGAVGMMGGNGGSMGPIGGVVGSNAAPARPPSGLKQNGSTSYSAV
VAESTAESAFSTPSQSQSSQSSSLTSSASQPMDNGPSLISSITLPPSSPSPSFSDSIPGG
GSLLNGPHSYTQASEGLKAPEPLSSLKAMAERAALGSGLDGEIPNLHLTDRDIFSGSSAA
PGTPAAPQPSLSEVSIPPSLGVCPLGPTPLSKDQVYQQTMQESAWTHMPHPSDSERIRQY
LMRNPCPTLPFHHQMPPHHSDSIEFYQRLSTETLFFIFYYLEGTKAQYLSAKALKKQSWR
FHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggctgataagagaaaactccaaggtgaaattgacagatgtttgaaaaaggtagcagag
ggcgtagaacagtttgaagacatttggcagaagcttcacaatgcagccaatgccaaccag
aaggaaaaatatgaggcagaccttaaaaaagagattaaaaagctacagcgattgagggat
caaataaaaacatgggtggcatcaaatgagatcaaagacaaaaggcagctagtggataat
cgcaaggtcatagagacgcaaatggagcggtttaaggtggtagagcgggagacaaagacg
aaggcctactctaaagaaggcctggggctcgccctgaaagtggacccagctcagagggag
aaagaagagacgggaaactggctaacgaataccatagacactctaaatatgcaggtggac
cagtttgagagtgaggtggaatccctcttcattcaaaccaggaagaagaaaggagagaaa
gagaagcaggatcgcattgaggagctaaagaggtttatagaaaggcataggtaccacatt
cgcatgctggagaccatcctgcgcatgctagacaacgactcggtgcaggtggactccatc
cagaagatcaaggacgacgtggagtactacatggagtcgtcacaggacccagactttgag
gagaacgagttcatttacgacgacctggatctggaggacatccctgcagcgctggtggcc
acctctccaacgggcttggggaacatagaggatgagatgttcctccactcgagcagcact
cccacctccaccacctcctcttcccccatccctccatccccggccacctgcactgctgag
aactctgaggacgataagaagagagggcggtcgacagacagggacgttagtcagtctcct
gcgaagaacggcacttcctccttgttgttgtccttttcctcgtccgccaattccgggtcc
tcttcttcttcctcctctcttgtctccatggccgccgttgtcggaggcaaccctggggtt
cccacaagcaacagtctaataggaagcttcagcagcgccgtacaacaacatcagcctcaa
cctccacagcaaccagtactgcagccactgcaacaaccccaacaaccccaaacaaaacct
tgcacccccagcccacccagccacccccttctctccaccgccccctctctccccacaccc
accacacccatctcagcctccccaaactccctgccccaggtctcgcctggtcatatcctc
aactccagcctaggccttgggttgggcctgggtaaagttggcatgacggggacaagcagt
gccaactctatgtctggtctgggcctgactgggatgtctgcctctctgaacaccatggca
ggcctgctctctgggtccacccatgccccttacgcccaggcagcctcgttgggaggcctg
ggtctgagtaccactacccagtccagtgtaacagtggagagctcctccatccccacctct
tgctccagtggagtgaccaccaacggggctgggacgggcctgggcctgctggggtccagc
ccagcacacggctccctgactggggggatcctgggcctggtgcctgggcagagtgtgatc
cctgggccccctctgatccctctcagcccggttggagctgccccggggggggcagtgggg
atgatgggaggaaacggaggaagcatggggccaatcggaggagtagttgggtcgaacgca
gcccctgccagaccacccagtggactgaagcagaacggaagcacaagttacagtgctgtg
gtggcagagagcacagcagagtccgccttcagcacacccagccaatcacagagcagccag
tcttcctcgctgacctcctcagccagtcagcctatggacaacggtcccagcctcatcagc
tccatcaccttgccccccagctctccgtccccctcgttttctgatagtatccccggtgga
gggagtctcctcaatggaccccactcctacacacaggcctctgagggcctcaaggccccg
gagcctctgagttctctgaaggcgatggctgagagagcagcattaggatcaggtctggat
ggagagatccccaacctgcacctcacagacagagacatcttctctggttcgtcggctgcc
cccggcacgcccgcggccccccagccctccctgtcggaggtgagcatccccccttccctg
ggggtgtgtcccctgggtcccactccgctctccaaggaccaggtgtaccaacagaccatg
caggagtctgcttggacacacatgccgcacccctcagactccgagaggatcaggcaatac
ctgatgaggaacccatgccccaccctgccattccatcatcagatgcccccccaccactca
gactctatagagttctaccagagactgtccacagagacgctcttcttcatcttctactac
ctggagggcactaaagctcagtacctgtcagccaaggctctgaagaagcagtcgtggagg
ttccacaccaagtacatgatgtggttccagaggcacgaagaacccaagaccatcactgat
gagtttgaacagggcacttacatctactttgactatgagaagtggggtcagaggaagaag
gaggggttcacctttgagtacaggtacctggaagaccgagacctgcagtga
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