Oncorhynchus gorbuscha (pink salmon): 124005270
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Entry
124005270 CDS
T07892
Name
(RefSeq) SWI/SNF complex subunit SMARCC1-like
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124005270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124005270
03036 Chromosome and associated proteins [BR:
ogo03036
]
124005270
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124005270
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124005270
PBAF complex
124005270
GBAF(ncBAF) complex
124005270
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
BRCT
Chromo
BRCT_2
Motif
Other DBs
NCBI-GeneID:
124005270
NCBI-ProteinID:
XP_046170328
LinkDB
All DBs
Position
LG19:19163691..19182239
Genome browser
AA seq
1096 aa
AA seq
DB search
MATAATAAGGTGSGGPAAGPVGVGTSVGRKKDGGPSSKYWESAETVSQIDSVRQWIGKHY
KKYVQADSPSNKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPTKTFLDFKAGGALCHILG
STYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKTLVQNNCLTRPTVFLVPDMEQKQANK
LKDIIKRHQGSITEDKSKATHHIYPSLTQQEDEEWLRPVMRKDKQMLVHWGMYPDSYDTW
VSTSDVEGDVEDPPTSEKPWKVHAKWVLDTDAFNEWMNEEDYEVDENKKTVSFRQRIFPK
EEESSRTPDRKERKANAAGKKRRRSPSPPTTPAESRKKGGKKGNPGSHWKRRGHRGEDEE
EEEDLTKDMEDPSPVPSMEEVTLPKNVNSKKDSENTPVKGGAVADLDDLEDDSLVSGGKE
EEEQGKAEVNRLIDSSEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSK
SPEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAVMRVHAFLEQWGLVNYQVDAE
SRPLPMGPPPTPHFNVLADTPSGLTPMHHRPPKIPSGQQMLNFPEKGKDKPSDMQNFGLR
NDLYSKKNPKSKGTSGGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLR
LPIEDPYLENSESSLGPLAYQPVPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALEEFS
RVREEVPAELVEAHVKKVQEAARSTGKVDPAYGLESSGIAGTAPEEPEKTEPAETEKMDT
DSDSQQPDKAESKDEAEKPSESAEKLAEGEKVKSEMAEPSEREEGESEGGEGKATADKDK
EEAMETSEDKEKEEQGTMEEEEEERKKLEPDGGEGNIATAAAAALASAATKAKHLAAVEE
RKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTERQAFHMEQLKY
AEMKARQQMEQQQASAAAQGPAPHHGPPGPGMLHGPPHHGPPPAMHSGHGPPGPGFHPMG
PHHPQPTGPMGGPGQPMPGRMMPGAPPTGSMPPMMGPRHPGAPNGMYPGPSPVQADGMPP
ASVGPQAAAPARVADN
NT seq
3291 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcggcaactgcagcgggtggaacgggttcagggggacctgcagccggccct
gtgggcgttggtacttcggtgggccgtaagaaagatggaggtccttcgtcgaaatactgg
gagagcgcagaaacggtctctcagatcgattccgtgcgccaatggatcgggaaacactac
aaaaagtatgtccaggcagactctccttccaataagtccctggcagggctggtggtgcag
ctgcttcagttccaggaagatgcttttggacggagggtgaacaaccctgccctcaccaag
ttacctaccaagaccttcctggacttcaaggcagggggtgctctatgtcatatcctgggc
tccacctacaagttcaagagcgagcagggctggcgtaggtttgacctgcagaacccctcc
aggatggacaggaatgtggagatgttcttgaatgtagagaagaccctggttcagaataac
tgcctgactcgaccaaccgtgttcctggtgcctgacatggagcagaagcaggccaataag
ctgaaggacatcatcaaaagacaccagggctctatcaccgaggacaagtctaaggccacc
catcatatctacccctctctaacccagcaggaggatgaggagtggctccgtccggtcatg
cgtaaggacaagcagatgctggtgcactggggcatgtacccagacagttatgacacctgg
gtgtccaccagtgatgtggagggggatgtggaggacccacccacctctgagaagccctgg
aaggtgcatgccaagtgggtcctggacaccgatgccttcaacgagtggatgaatgaggaa
gactatgaggtggacgagaacaagaagactgtgagcttccgccagaggatcttcccaaag
gaggaggagtcttcccgtacacccgatcgcaaggagcgcaaggccaacgccgccgggaag
aagaggcggcgctcgccatctcccccgaccaccccagccgagtcccgcaagaagggtggc
aagaaggggaaccctgggtctcactggaagcgtcgtggccaccgtggcgaggacgaggag
gaggaagaggatctgaccaaggacatggaggacccctcgcctgttcccagcatggaggag
gtcactttgcccaagaacgtgaactctaagaaagacagcgagaacaccccagtgaaggga
ggggcagtggcagatttggatgatctggaggatgactctctggtctctggaggcaaggag
gaggaggagcagggcaaggccgaggtcaaccgcctcatcgactccagcgaggacaatgtg
accgagcagacccaccacatcatcatccccagctacgccgcctggttcgactacaactgt
atccatgagattgagaggcgtgcactgccagagtttttcaacggcaagaacaagtccaag
tccccagaaatatacctggcctaccgtaacttcatgatcgacacgtaccggctcaacccc
caggagtacctgacctccacctcctgccgcaggaacctgacaggagacgtgtgtgctgtc
atgagggtccatgcgttcctggagcagtgggggctggtgaactaccaggtggatgctgag
agccgccccctccccatgggccccccgcccaccccccacttcaacgtgctggctgacacc
ccctctggcctgacgccgatgcaccaccgcccccccaagatcccctctggccagcagatg
ctcaacttcccagagaagggcaaagacaagccctctgacatgcagaactttggcctgcgt
aatgacctctactccaagaagaaccccaagagtaaaggaaccagcggcggccgggagtgg
accgagcaggagactctgctcctattggaggctctggagatgtacaaggacgactggaac
aaggtgtcggagcacgtgggctcgcgcacccaggacgagtgtatcctgcacttcctgcgt
ctgcccatcgaggacccctacctggagaattctgagtcgtccctgggccccctggcctac
cagcccgtacccttcagccagtcaggcaaccctgtcatgagcaccgtggccttcctggcc
tccgtggtggacccccgcgtggcctccgccgccgccaaggcagccctggaggagtttagc
cgtgtgcgtgaggaggtgccagcagagctggtggaggcccatgtgaagaaggtgcaggag
gcggcccgcagcacgggcaaggtagaccctgcctatggcctggagagcagcggcatcgca
ggaaccgcccccgaggagcccgagaagaccgagccagcagaaacagagaagatggacaca
gactccgactcccagcagcctgacaaggctgagtctaaggacgaggcagagaagcccagt
gagtctgctgagaagctggctgagggagagaaggtgaagagcgagatggccgagccatcg
gagcgggaggagggggagagcgagggaggagagggcaaggctacagcagacaaagacaag
gaggaggccatggagacctctgaggacaaggagaaggaggagcagggaacgatggaagag
gaggaagaggagaggaagaagttagagccggacggaggggagggtaacattgccactgct
gccgctgctgccctcgcctcagctgccaccaaggccaagcacctggcggcggtggaggag
aggaagatcaaatctctggtggctctgctggtggagactcagatgaagaagctggagatc
aagctcagacactttgaggagctggaaaccatcatggaccgagagaaagaggctttggag
ttgcagaggcagcagctgcttacggagcgccaggctttccacatggagcagttgaagtat
gctgagatgaaggcccgccagcagatggagcagcagcaggccagtgcagcggcccagggc
cccgcaccccaccatggccccccagggccaggcatgctccacggacccccccaccacgga
ccccctcccgccatgcactctggacacggcccccccggccccgggttccaccccatgggt
ccccaccacccacaaccgacaggaccaatgggagggcccggtcagcccatgccagggcgc
atgatgcccggtgccccccccactggcagcatgcctcccatgatgggtccccgccaccct
ggagcccccaacggcatgtaccctggtccctcgcctgtacaggctgatggtatgccccca
gcgtctgtgggacctcaagcggcagccccagcacgagttgctgacaactaa
DBGET
integrated database retrieval system
