Oncorhynchus gorbuscha (pink salmon): 124005426
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Entry
124005426 CDS
T07892
Symbol
ddx6
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124005426 (ddx6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124005426 (ddx6)
03036 Chromosome and associated proteins [BR:
ogo03036
]
124005426 (ddx6)
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124005426 (ddx6)
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124005426 (ddx6)
mRNA degradation factors
5'-3' decay
Decapping complex
124005426 (ddx6)
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124005426 (ddx6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
124005426
NCBI-ProteinID:
XP_046170639
LinkDB
All DBs
Position
LG19:77983378..78008876
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AA seq
492 aa
AA seq
DB search
MSTASTQNPVILGHSNQNGQLRGPVVKPAGGQGSGGGSHQTQQPSHMKQASSTINNGTGP
SSTQLAKATPTANTVIKPGDDWKRNLTLPPKDTRMRTSDVTATKGNEFEDYCLKRELLMG
IFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDCIQAMGI
VPTRELALQVSQICIQISKHMGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLI
KKGVAKVNQVQMMVLDEADKLLSQDFVVMMEEILSYLPKQRQILLYSATFPLSVQKFMNS
HLSKPYEINLMEELTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELL
AKKISQLGYSCFYIHAKMRQEHRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFD
FPKLGETYLHRIGRSGRFGHLGLAINLITYDDRFNLKGIEEQLGTEIRPIPGCIDKSLYV
AEYHSENGEVKL
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgagtaccgccagtacccagaacccagtgatactgggccattccaaccagaatggccag
ctccgaggaccggtggtgaagcctgcaggaggccagggcagcggaggaggcagtcatcag
acacagcagcccagccatatgaagcaggcctccagcacaatcaacaacggcactgggcct
agcagcacccagctggctaaagctacccccacagccaatactgtcatcaagcccggagat
gactggaagaggaatttgacgctccctccaaaagacacgaggatgagaacatcggacgta
acggcaactaaaggcaatgagtttgaagactactgcctgaagagggagctactgatgggc
atctttgagatgggctgggagaaaccctctccaatacaggaggagagcatccccatagcg
ttgtctgggagggacattctggccagggccaagaacgggacaggaaagagcggagcttac
ctcattcccttactggaacgcattgacctgaagaaggactgtatacaagctatgggcatc
gttcccaccagagaactggcattgcaggtgagccaaatctgtatccagatcagcaaacac
atgggaggggtcaaagtcatggccacaacgggtggtaccaacctccgcgatgacatcatg
aggctcgacgagacagtacacgttgtgattgccacccctgggaggatcctggacctcatt
aagaagggtgtggccaaagtcaatcaggttcagatgatggttttggatgaggcagacaag
ctgttgtcccaggactttgtcgtgatgatggaggagatattgagctacctgcccaaacag
agacagattctgctctactctgctaccttccctctcagcgtacagaagttcatgaactcc
cacctgtccaagccctacgagatcaacctgatggaggagctgaccctgaagggggtcacc
cagtattatgcctacgttacagagagacagaaggtccactgtctcaacacgctcttctcc
aggctccagatcaaccagtctataatcttctgtaactcgtctcagagggtggagctgctg
gccaagaagatatcacagctgggctactcgtgtttctacattcatgccaagatgagacag
gagcaccgtaacagagtgttccacgacttcagaaacgggctctgccggaatctggtctgc
acagacctcttcacaagaggtatcgacattcaggcggtgaatgtggtgatcaactttgac
ttccccaagctgggcgagacgtacctccaccgcatcggcagatctggtcgttttggtcac
ctgggtctggccatcaacctgatcacatacgatgaccgcttcaatctgaagggcattgag
gagcagctgggaacagagatcagacccatccctggctgcatagacaagagcctgtatgtc
gcagagtaccacagtgagaacggagaggtcaagctgtga
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