Oncorhynchus gorbuscha (pink salmon): 124005512
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Entry
124005512 CDS
T07892
Name
(RefSeq) clathrin heavy chain 1-like isoform X1
KO
K04646
clathrin heavy chain
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04142
Lysosome
ogo04144
Endocytosis
ogo05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
124005512
04142 Lysosome
124005512
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
124005512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124005512
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
124005512
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
124005512
Exosome [BR:
ogo04147
]
Exosomal proteins
Proteins found in most exosomes
124005512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
124005512
NCBI-ProteinID:
XP_046170815
LinkDB
All DBs
Position
LG19:complement(53992332..54012947)
Genome browser
AA seq
1687 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPAKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPPTG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEPTAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNTLFAAGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFQKIVLYAKKVGYTPDWMFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPAEGPLQTRLLEMNLVHAPQVADAI
LGNQMFTHYDRAHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNTLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLILVVKGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHDGCEEPATHNALAKIYIDSNNNPERFLRENTF
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRKDPELWASV
LLETNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPPVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VGQAAAQSGNWEDLVKFLQMARKKSRESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDERMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEFDNAIITMM
SHPSDAWKEGQFKDIVTKVANVELYYKAIQFYLEFKPLLLNDLLIVLSPRLDHTRAVNFF
MKTKQLSLVKPYLRSVQNHNNKGVNEALNNLFITEEDYAALRASIDAYDNFDNITLAQGL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDVELAEELLAWFLE
EDKKECFAACLFTCYDLLRPDVVLETAWRHNIMDFSMPYFIQVMREYLSKVDAIKEKVDK
LDASESLRKQEEQNTESQPIVYGTPQLMLTSGPGQAVPPQPGYGGYGYPAAPAGYGQPPQ
PGFGYGM
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggcacaaatactacctatccgcttccaggagcacctgcagctccagaacctggggatc
aacccagctaacattggattcagcaccctgactatggagtctgataagttcatctgtata
agagagaaggtgggcgagcaggcacaggtggtcatcattgatatggccgaccccaacact
cccatccgtagacccatctctgcagatagcgccatcatgaaccctgctagcaaagtcatt
gccctcaaagacgctgcaaaaaccctccagattttcaacattgagatgaagagcaagatg
aaggctcacaccatgactgatgatgtcactttctggaagtggatctccctcaacactgta
gcacttgtcacagacaacgccgtctaccattggagcatggagggagactcccagccagcc
aaagtctttgaccgacactccagccttgcaggctgtcaaatcatcaactaccgcaccgat
gccaaacagaaatggctgcttctcattgggatttcagcacagcaaaaccgtgtggtggga
gccatgcagctgtactctgtggacaggaaggtgtcccagcccattgagggccacgccgca
ggctttgcccagttcaaaatggagggcaacacagaggaatccacactgttctgcttcgct
gtccgagggcaagctggaggaaagttacacataattgaagtggggaccccaccaacaggc
aatcagccgtttccaaagaaggcagtggacgtgttcttccctcctgaggcccagaatgac
ttccctgtagctatgcagatcagctctaagcaggatgttgtctttctcatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgtatttacatgaacaggatcagc
ggggagaccatatttgttacagccccacatgaaccaaccgctggcatcattggagtcaac
aggaaaggacaggtgttgtccgtgtgtgtggaggaggagaacatcatcccctacatcacc
aacgtgctccagaacccagaccttgccctgcgtatggctgtacgcaacaacctggccggg
gccgaggagctgttcgcccgcaagttcaacaccctgttcgctgcagggaactattctgag
gctgccaaggtggccgccaatgctcccaagggtatcctgcgtaccccagacaccatccgt
aaattccagagtgtgccagcccagccgggccagacctctcccctgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtccctggaactgtgcaggcccgtc
ttacagcagggacgcaagcagctgctggagaaatggctgaaagaggacaagctggagtgt
tctgaggagctgggggacctggtgaagtcagtggaccccactctggccctcagcgtctac
ctcagggccaacgtgcccaacaaggtcatccagtgcttcgctgagaccggacagttccag
aaaattgtcctctacgccaaaaaggtgggttacaccccagactggatgttcctgctgagg
aacgtgatgagaatcagtccagaacaaggcctgcagttctcccagatgctggtgcaggac
gaggagccgctggctgacatcacacagatcgttgacgtgtttatggagtataacctgatc
cagcagtgtacctccttcctcctggatgccctgaagaacaacaggcctgctgaggggcct
ctgcagacacgcctgctggagatgaatctggtccacgccccacaggtggctgatgccatc
ctgggcaaccagatgttcacccactacgaccgtgcccacgttgcccagctgtgtgagaag
gctggcctgctgcagagggctctggagcattacaccgacctgtacgacatcaagcgggct
gtggtgcacacacacctgctcaaccctgagtggctggtgaacttttttggctccctgtca
gtggaggactctctggagtgtcttcgggccatgctgtcggccaacatccgtcagaacctg
cagatctgtgtccaggtggcctctaagtaccacgagcagctctccaccaactccctcact
gagctctttgagtccttcaagagcttcgaaggtctgttctacttcctgggttccatcgtt
aacttcagccaggacccagaggtccacttcaagtacatccaggcagcctgcaagacggga
cagatcaaagaggtggagaggatctgcagagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaagctaagctgactgatcagctccccctgatcatcgtgtgtgac
cgcttcgactttgtccacgacctggtcctctacttgtaccgcaacaccctgcagaaatac
attgagatctatgtgcagaaggtgaaccccagccgtctgccggtggtgattggagggctg
ctggatgtggactgtgctgaggatgtgattaagaacctgatcctggtggtgaaaggacag
ttctccactgatgaactggtggctgaggtggagaagaggaacagactgaagctgctccta
ccctggctggaagcccgtatccacgatggctgtgaggagccagctacccacaatgccctg
gccaagatctacatcgacagcaacaacaacccagagcgcttcctgcgtgagaacaccttc
tacgacagccgcgtggtgggcaagtactgtgagaagagggacccccacctggcctgcgtt
gcctacgagagaggacagtgtgaccaggagctcattaatgtgtgcaatgagaactctctg
ttcaagagtctgtctcgctacctggttcgccgtaaagaccctgagctgtgggccagtgtg
ctgctggagactaacccattcagaagacccctcatcgaccaggttgttcagactgccctg
tctgagacccaggacccagaggaggtttcagtcacagtcaaggccttcatgactgcagat
ctccccaacgaactcattgagctgctggagaagatcgttctggataactcagtcttcagt
gaacatagaaaccttcagaatctgctgattctaacagccatcaaggcagaccgtacccgt
gtaatggagtacatcaaccgcctggacaactacgacgcccctgacatcgctaacatcgcc
atcagcaacgagctctttgaggaggcattcgccatcttcaggaagtttgacgtcaacacc
tctgccgtgcaggttctgattgagcacattgggaacctggaccgggcctatgagtttgct
gagcgctgcaatgagcctccagtgtggagccagctggccaaggctcagctccagaagggt
ctggtgaaggaggcaatcgactcctacatcaaggctgacgacccctctgcctacatggag
gtgggccaagctgcagcccagagcggtaactgggaggacctagtgaagttccttcagatg
gcccgtaagaagtcccgtgagtcctacgtggagaccgagctcatcttcgccctggccaag
accaaccgcctggctgaactggaggagttcatcaatggacccaacaacgcccacatccaa
caggtgggtgacaggtgttatgatgagaggatgtatgatgcggctaagctgctctacaac
aatgtgtccaacttcgggcggctagcgtccaccctggtccacctgggagagtatcaggcc
gccgtggacggagcccgcaaggccaacagcacccgcacctggaaagaggtgtgctttgcc
tgtgtggatgggaaagagttccgcctggcccagatgtgtggcctgcacatcgttgtccat
gctgatgaactggaggagctcatcaattactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctgggtctggagcgggctcacatgggcatgttcaccgag
ctggccatcctctactccaagttcaaaccccagaagatgagggagcacctggagctcttc
tggtccagagtcaacattccaaaggtcctgagggctgcagagcaggcccacctgtgggcg
gagctggtcttcctctatgacaagtatgaggagtttgacaatgccatcatcaccatgatg
agccacccctccgatgcctggaaggaaggacagttcaaagacatcgtcaccaaggtggcc
aatgtggagttatactacaaggctatccagttctacctggagttcaaaccattgttattg
aacgatctgctcatagtgttatcaccacgactcgaccacacccgcgctgtcaacttcttc
atgaagaccaagcagctgtcactggtcaagccatacctgcggtcagtgcagaaccacaac
aacaagggtgtcaacgaagcacttaacaacctcttcatcacagaggaagactatgcggcc
ctgcgtgcctccatcgatgcctacgacaattttgacaacatcaccctggcccagggcctg
gagaagcacgagctgattgagttcaggaggatcgctgcctacctcttcaaaggcaacaac
cgctggaagcagagcgtggaactctgcaagaaggacaaactctacaaggacgccatgcag
tatgcgtctgagtcaaaagacgtggagctggctgaggagttgttggcctggttcctggag
gaggacaagaaggagtgctttgctgcctgcctcttcacctgctacgacctgctgaggcct
gacgtagtgctggagacggcctggaggcacaacatcatggacttctccatgccctacttc
atccaggtcatgagggagtacctctccaaggttgatgcgattaaggaaaaggtcgacaag
cttgacgcctcagagtcactaaggaaacaggaggagcagaacaccgagtcccagcccatt
gtttatggcacaccccagctcatgctcacttcaggccctggtcaggctgtgcccccccag
cctggctacggaggttacggctacccagcagcacccgctggttacggccagcctccccag
cctggctttggctacggcatgtga
DBGET
integrated database retrieval system
