Oncorhynchus gorbuscha (pink salmon): 124005605
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Entry
124005605 CDS
T07892
Name
(RefSeq) protein SMG5-like
KO
K11125
protein SMG5
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124005605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124005605
03032 DNA replication proteins [BR:
ogo03032
]
124005605
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
124005605
mRNA cycle factors
Common to processing body (P body) and stress granule
124005605
DNA replication proteins [BR:
ogo03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
124005605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
124005605
NCBI-ProteinID:
XP_046170967
LinkDB
All DBs
Position
LG19:complement(20760153..20776104)
Genome browser
AA seq
1111 aa
AA seq
DB search
MSGPGQDSEPEAKVLLIKRLYRAVVESVHKLDVIIGSKSSYREVFKPENISLRNKLRELC
VKLMFLHPVDYGRKAEELLWRKVYYEVIQVIKTNKKHIHSRSALECAYRTHLIAGVGFFQ
HLLLYIQSHYQLEMQDCIDWTHVTDPLIGRKKPVSATLKEMEWATMACHRCLVYLGDLAR
YQNELAGVEAEQLAERFYHQALSVTPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSET
PFEGAYGNLKRLFDKAAKMYHQVKKQEMKKLSPSRQRSKDIKQLLVSFMYLQSLLQPKNS
LLETELTSLCQSVLEDFNLVLFYLPSAPHGHEATSPSEEEHEEHESPCALLPDALVFKMV
VTCLMVVHSLKRGGSKQYSASIAFTLALFSHLVNHVNIRLQAELEEGESQVPPLQNDNTD
DSELRDPSDPLTLEERPLQNGSLDHEDDEVGHRSTVAQKAGVGERKAEEEKQKQKKYARL
SMMRRRRCATRKEDESDLSEGFESDEEEEEEEQRGCTDSGDGASGPSLTPSMLGKESKSR
REHLTEGTWESASEEDEEGSTAFDVETDSDMNSQESRSDLEDIEDSETPENLDTPPRGEV
QPEDDDEEEEQADPREDGDGDTPPATNGPLLPSDPSISSNLQAMSSQLFQAKRCFRLAPT
FSNVLLRPHSSATNSTPNPTDPDASFTTPSQETPPPPGDSPCDACPGTANGTNDNEVDSD
SECSMHSNQSVHSEKTLSERLEILTNQGLIQVVKVFVDWLRANTDIILMCAQSSQSLWNR
LSVLLNLLPDGSKMLEAELGLNSEVTELLSECEQPGLVQSLLLPEDLALRHLPALNLAHR
HLDYSRPRPSLSPVQECVVRVCCIRSFGHFLTNLQCNILHFNPEAGIFTSISQSEQDNLV
QQAKAQFRMAEEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKTQSSMSPYLVPDSAALC
QHLNLLRHLAGSGCFIIIIPRTVIDGLDHLKKENAGARDGIRFLESEFRKGNRYIRCQKE
SGRSFERDKLKRQDIEAWHLYKTVDSCRQLTVSQSNGDEDTAGMVTILTGHSVGELCTRS
APMKSAIQAVATAGMELKNIVEFYRQWKEIG
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgagtggacctgggcaggatagcgagccagaggcaaaagtcctcctcatcaagcggcta
tacagggcagtggttgagtcggtacacaagctggatgtcatcattggcagcaagtcatcg
tacagggaggtcttcaagcctgaaaacatcagccttcgcaacaagttgagggagctgtgt
gtgaagctgatgtttctccaccctgtggactatggtcgcaaggctgaggagcttctgtgg
aggaaggtctactacgaggtcatccaggtcatcaagaccaacaagaagcacatccacagt
cgcagtgccctggaatgcgcctacaggactcacctgatagccggcgtgggcttcttccag
cacctgctgctctatatccagtcacactaccagctggaaatgcaggactgcatcgactgg
acccatgtcaccgaccccctcatcggtcggaagaagccggtatcagccacccttaaggag
atggagtgggccacaatggcctgccatcgctgcctggtgtacctgggagatctagcccgt
taccagaacgaattggctggggtggaggctgagcagctggcagagcggttctaccaccag
gccctgtctgtcactccgcacgtaggaatgcctttcaatcagttaggtacactggcgggg
agtaaattctacaacgtggaggccacctattactacctacgctgtatacagtcggagact
cccttcgaaggggcctatgggaatttgaagcgtctgtttgataaagcagctaagatgtac
caccaggtgaagaaacaggagatgaagaagctgtctccctcacggcaaagatccaaggac
atcaagcaactactagtgagcttcatgtacctgcagagtctactgcagcccaagaacagt
ctgctggagacagagttgacctctctgtgtcagtcggtgctggaggattttaacttggtg
ctgttctacctgccctcggcgccacacggccacgaggccacttcccccagcgaggaggag
catgaggaacacgaatcgccctgcgccctgctccccgacgcacttgtcttcaagatggtg
gtcacctgcctcatggtggtgcacagcctgaagcggggagggtcaaagcagtacagtgcg
tcaatagccttcacgctggccctcttctcccacctggtgaaccatgtcaacatccgcctg
caggctgagctggaggagggggagagccaggtgcccccgctgcagaatgacaacacagac
gactctgagttgagagacccgtctgacccgttgaccttggaagagaggcccctgcagaat
ggctccctagatcatgaggacgacgaggttggccaccggagcaccgtggcccagaaagca
ggcgtcggtgagcggaaggcagaggaggagaaacagaagcaaaagaagtatgcccgcctc
tccatgatgcgccgccgccgctgcgccacccgcaaagaagatgagagcgacctgagcgag
ggtttcgagagcgacgaagaggaggaggaagaagaacagaggggctgcaccgactccggg
gacggtgcctcgggaccctcactcaccccctccatgctgggaaaggagagcaagagcagg
agggagcacctgacagaggggacctgggagagcgcctcggaggaagacgaggaggggagc
acggccttcgacgtggagactgactcggacatgaacagccaggagtcccgctccgacttg
gaggatatagaggactcggaaaccccggagaacttggacacacctcctcggggggaggtg
cagcctgaagacgatgatgaggaggaggagcaagccgatcccagggaggacggagacggg
gacacccctccggccaccaatggcccactcctgcccagcgaccccagtatcagcagtaac
ctccaggccatgtcatcccagctgttccaggccaagcgctgcttccgcctggcacccacc
ttcagcaacgtgctgctgaggccccacagctccgccaccaactccacacccaaccccact
gatccagacgcctccttcaccaccccctcccaggagacccctcctcccccgggggactca
ccctgcgacgcttgccccggcactgccaacggaaccaacgacaatgaggtggattccgat
tcagagtgtagcatgcacagcaaccaatcagtacacagcgagaagaccttgtcggagaga
ctggagattctgaccaatcaggggctcatccaggtggtcaaggtgtttgtggattggctg
agagccaacactgacattatcctcatgtgtgcacagagttctcagagcctatggaacaga
ctgtctgtgctactcaacctgctgcctgacgggagcaagatgctggaagcagagctgggt
ctgaactctgaggtgacggagctactgagtgagtgtgagcagcctggcctggtccagtcc
cttctgctgcctgaggacctggccctgcgacacctacctgccctcaacctggcacaccgc
cacctcgactactcccgccccagaccttccctcagccccgtacaggagtgtgtggtgcgt
gtgtgctgcatccgcagctttggccacttcctcaccaatctccaatgcaacatactgcac
ttcaacccggaggcgggcatcttcaccagcatcagccaatcagagcaggacaacctggtg
cagcaggccaaggcccaattccgcatggcagaggaggaggctcgacgaaaccgcctgatg
agagacatggctcagctccgcctacagttggaggtgtctcagctagagggcagcctgcaa
cagcccaagactcagtcctccatgtctccgtacctggtacccgactctgccgccctgtgc
cagcacctcaacctcctcagacatctggctggcagtggctgcttcatcatcatcatcccc
cgcacagtgattgatggccttgaccacctgaagaaggagaatgccggagcgagggacggt
atccgcttcctggagtctgagttccgtaaaggcaacaggtacatacgttgccagaaggag
tcggggaggagttttgagagggacaagctgaaacgccaggacattgaagcctggcatcta
tacaagactgtagacagctgtcgtcagctgaccgtctcccagagcaacggagacgaagac
acggctggtatggtcactattctcaccggtcactcagtgggggagctgtgtacccgctct
gcacccatgaagtcggcaatccaggcagtggcgacagcaggcatggagctgaagaacatt
gtggagttctaccgtcagtggaaggagattggctga
DBGET
integrated database retrieval system
