Oncorhynchus gorbuscha (pink salmon): 124005678
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Entry
124005678 CDS
T07892
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit-like isoform X1
KO
K07466
replication factor A1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03030
DNA replication
ogo03420
Nucleotide excision repair
ogo03430
Mismatch repair
ogo03440
Homologous recombination
ogo03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124005678
03420 Nucleotide excision repair
124005678
03430 Mismatch repair
124005678
03440 Homologous recombination
124005678
03460 Fanconi anemia pathway
124005678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ogo03000
]
124005678
03032 DNA replication proteins [BR:
ogo03032
]
124005678
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124005678
Transcription factors [BR:
ogo03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
124005678
DNA replication proteins [BR:
ogo03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
124005678
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
124005678
MMR (mismatch excision repair)
124005678
DSBR (double strand breaks repair)
HR (homologous recombination)
124005678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
124005678
NCBI-ProteinID:
XP_046171081
LinkDB
All DBs
Position
LG19:50907668..50971942
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AA seq
607 aa
AA seq
DB search
MNNMLTKGAIEDLTKGSNNLPNPILQLVNIRKIDGGSGPARFRLMMSDGQHSMSSFMLST
QLNSMAEDNRLAPNCICQLKRNVTNVLKDGRHVVVILDMEVVKSADEVAGKIGEPTPYVE
GQSKAPQSAPNPSVHPLQPQNGNYGTMNKGPSREFGGKKAMPLSAMPSTPGGSSKVVPIA
SLNPYQSKWTIRARVTNKSGIRTWSNSRGDGKLFSMEIVDESGEIRVTAFTQEVDKFYSI
IETGKVFYISKGSLKIANKQYSSLKNDYEMTLNGESTIIPCEDTQDVPMVQCNFISIADL
EAREKDAILDVIGVCKSVADVTRLTTKNNREVSKRTLNLMDQSGKMVEVTLWGEEAENFD
GSGQPILAIKGAKLSDYGGRSLSASFSSTVMVNPDIPEAYKLRGWYDKEGHSMDGQSLTE
ARTGGGGGNTNWKTLTDIKTEHLGHGDKADYFSCIATIVYIRKENCLYQACPSQDCSKKV
VDQQNGMFRCEKCDKEFPNFKYRLILSANIADYGDNQWVTCFQESAEAILGQNAAYLGQL
KDSNEAAFEEIFQQANFHTFIFRNRVKLETYNDESRIKATVMEVKPVDHKEYSKRLIMNI
RKMAATQ
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgaataacatgctgacaaagggagctatagaggatctaaccaaaggctctaataattta
ccgaaccccattcttcaattagtgaacatccgtaaaattgatggaggcagtggaccagcc
cgctttcgtctgatgatgagtgatggacagcactcaatgtcttcgttcatgctctccacc
caactcaactcaatggctgaggacaaccgactggccccaaactgtatctgtcagctgaag
aggaatgtgaccaatgtcctaaaggatggacggcatgtggtggtcatattagacatggag
gtggtgaagtctgctgatgaggtggctggaaagatcggagagcccacgccttacgtggaa
ggtcagagtaaagccccacagtcagcccccaatccctcagtccaccccctgcagccccag
aatggaaattatggcaccatgaacaaaggtcccagcagagagtttggggggaagaaggcc
atgcctctgtctgcaatgcccagcactcctgggggatcctccaaagtcgtgcccattgcc
agcctcaacccataccagtcaaagtggaccatccgagcacgtgtcaccaacaagagcggc
atccgcacctggagcaactctcgtggggatggcaagctgttctctatggagattgtggat
gaaagtggagagatcagagtgactgcctttacccaggaggtggacaagttctacagcatc
atcgagactggcaaggtgttctacatctccaagggatcactgaagatcgccaacaagcag
tactcgtccctgaagaatgactatgagatgaccctaaatggagaatccaccatcatcccc
tgtgaggacacccaggacgtacccatggtgcagtgcaacttcatctccatcgctgacctg
gaggcccgagaaaaggacgccattttggatgtgattggagtgtgtaagagcgtggctgat
gtgacccgcctcaccaccaagaacaaccgtgaggtctccaagaggacgctcaacctgatg
gaccagtctggtaaaatggtggaggtcaccctgtggggagaggaggcagagaactttgat
ggatctgggcagcccatcttggctatcaaaggggccaagttgtcggactatgggggaaga
tctctgtctgcttcgttcagcagcaccgtcatggtcaaccccgacatccctgaggcatac
aagctgcggggctggtatgacaaggaaggccactctatggatggccagtctctgacggag
gcaaggacaggtggaggtggagggaacaccaactggaagaccctgactgacatcaagacg
gagcacctcggacacggagacaaggcagactacttcagctgcatcgccaccatagtgtac
atccgtaaggagaactgtctgtaccaggcgtgccctagtcaggactgcagtaagaaggtg
gtggaccagcagaacggcatgttccgctgtgagaagtgtgacaaagagttccccaacttc
aagtaccgactcatcctctctgccaacatagcagactacggggacaaccagtgggtgacc
tgcttccaggagagtgctgaagccatcctgggacagaacgctgcttacctagggcaactc
aaagactcgaatgaagctgccttcgaggagatctttcagcaggccaacttccacacgttc
atcttccgcaacagagtcaagctggagacctacaatgacgagtcccggatcaaggccacg
gtgatggaagtgaaacctgtggaccacaaggagtacagcaagagactcatcatgaacatc
aggaagatggctgccacccaataa
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