Oncorhynchus gorbuscha (pink salmon): 124006252
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Entry
124006252 CDS
T07892
Name
(RefSeq) integrin alpha-10-like isoform X1
KO
K06586
integrin alpha 10
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04510
Focal adhesion
ogo04512
ECM-receptor interaction
ogo04810
Regulation of actin cytoskeleton
ogo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124006252
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
124006252
09142 Cell motility
04820 Cytoskeleton in muscle cells
124006252
04810 Regulation of actin cytoskeleton
124006252
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ogo04515
]
124006252
Cell adhesion molecules [BR:
ogo04515
]
Integrins
Integrin alpha subunits
124006252
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
FG-GAP
Integrin_A_Ig_2
Integrin_A_Ig_1
Integrin_A_Ig_3
FG-GAP_3
VWA_2
FG-GAP_2
ITGAX-like_Ig_3
vWA_SIBA-E
Metallopep
Motif
Other DBs
NCBI-GeneID:
124006252
NCBI-ProteinID:
XP_046172096
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All DBs
Position
LG19:complement(3608303..3663789)
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AA seq
1170 aa
AA seq
DB search
MELHKYLLLLKFIVLLKGLCECFNIDVKRPRIYTGPEEALFGFSVLQHDNAGDKSMLVGA
PWDGPSNTRRGDVYKCIVGEERSSNCTKTNLGESTLQNVSRNLKNSHLGMTLSPDSPDGF
LACAPLWSQECGTSVFSTGICVSVSNDLEPRETIAPTAQRCATYMDIVIVLDGSNSIYPW
YEVQNFLSNILSKFHISPEQMQVGVLQYGEVAVHEWSLRDYQTTQEVVEAAKNISRQEGR
ETRTAYAIHMGCTEAFSPERGAREGATKVMIVVTDGESHDGEELPDALEECEKRNITRYA
IAVLGHYIRRQQDPETFISEIKYIASDPDDKYFFNVTDEAALNDIVDALGDRIFTLEGTL
GYNESSFKFEMSQIGFSTHVLDDGILFGMVGAYDWDGGVLKEGTKGRIMPTREAFESEFP
QELKNHAAYLGYTVSSVIVGDWRRLYVAGAPRFKHKGKVILFELSDNGDVNIAQALNGEQ
IGSYYGSEVCGLDVDQDGITDVLLVAAPMYLGPGNKEAGRVYIYSLSGEEVFVSNGTLKA
EDRFQDARFGYALASAPDLNHDGYTDLLVGAPLEDGHNGAIYVYHGQGIHIIHNYKQRIA
GSSLSPSLQYFGRSVSARLDLDGDGLLDLAVGAQGSAVLLSSRSIVQINMSLSFQPHSIN
VIQKTCQRGGRESACLNATACFLALSRSPGTHSSSFELSVVAMLDERKLTARALFDDSNQ
RQTQLGVRVHTGQTVCHNLPFHVFDTADYIRPISFSLRFKINDTESGPVLDEGWPTTFKR
SIAFFKDCGEDDVCVTDLVLQAHMDISGTRQQPYVIRSPRRRLAVEVQLQNRLENAYNTS
LTLHYSRNLHFSSLSIREDTQLKIECTSLSSNSHSCNVSYPVFRSHSKVNFMLEFEFSCT
SLLSKVQMKLTVASDSVEREATLGDNSVQLQTVVQYEPDLFITSDSNLNRYEVHPTRTIS
EAIGPEFYTHFRLQNLGCYSVSNLELRLSLPSVAAGDRVFMAVTEVFSYNVTGVNCSVDS
HVSQQKDRQRDVRPLHPEDMQQTDLLNCSRSWCVEVVCEVQQLHRGQTALIRVSRRVHDN
FFRQAKFKMVRIVSAYRLAAQESNLVTLGSGAIWRETVLEVLKGRAIPISLWILIGSIIG
GLLLLALIIFAMWKLGFFTRKQIKDEELED
NT seq
3513 nt
NT seq
+upstream
nt +downstream
nt
atggagctgcacaaatacctgctactcctcaagttcatagttctcctcaaagggttgtgt
gagtgtttcaacatcgatgttaagcggcctcgtatctacactggtccagaggaggcccta
tttggtttctctgtgctacagcatgacaatgcgggggacaaatcgatgctggttggtgct
ccttgggatggaccttccaataccaggagaggagacgtgtacaaatgcatcgtgggagag
gagaggagttccaactgcaccaaaaccaacctaggtgagagcacgttacagaatgtatct
agaaacctgaagaactctcatctaggaatgaccctcagtccagactcacctgatggattc
ctggcgtgtgcgcccctgtggtctcaggagtgtggtacctcagtcttcagtacggggatc
tgtgtttctgtcagcaacgacttggaacctagagagaccatcgcccctacagcacagaga
tgtgcaacatacatggacatagtgatcgttctggatggctccaatagcatctatccctgg
tatgaagtccagaacttcctcagtaacatcctcagcaagttccatatcagcccagaacag
atgcaggtgggggttttgcagtacggtgaggttgcggtccatgagtggtcactgagagac
taccagacaacacaggaggtggttgaagcggctaagaacatcagccgacaggaggggcgg
gagacacgcacagcatacgccatccacatgggctgtacggaggcattcagccctgagcgg
ggggcgagggagggggccaccaaggtcatgatcgtggtgacggacggagagtcacatgat
ggagaggagctaccggacgctctggaggagtgtgagaagagaaacatcaccagatatgcc
atcgctgtattgggtcactacatccgcaggcagcaggacccagagacgtttatcagtgag
atcaagtacattgccagcgaccctgatgacaaatactttttcaacgtgactgacgaggcg
gcgctcaacgacatcgtagatgcactaggagaccgcatcttcactctagaggggacgctg
gggtacaacgagagctccttcaagtttgagatgtcccagattggcttctccacacacgtt
ctcgatgatggcatcctgtttgggatggtgggggcgtatgactgggacggaggggtgctg
aaggagggcactaagggccgcatcatgcccaccagagaggcctttgagtcagagttcccc
caggagctcaagaaccatgctgcctatctgggctacacagtgtcgtcagtgatagtggga
gactggaggaggctgtatgtggctggagctcccaggttcaaacacaaaggaaaggtcatt
ctgtttgaactgagcgacaatggagatgtcaacattgcacaggccctcaatggagaacag
attgggtcatactatggcagtgaggtgtgtgggttggacgtggaccaggatggcattact
gatgttctgctggtggcagcacccatgtacctgggccctggcaacaaggaggcaggcaga
gtctacatctactccctcagtggggaggaggtgtttgtgtctaacggtactctgaaagca
gaggataggttccaggatgctaggtttggctacgccctggcctccgccccagacctcaac
catgacgggtacactgacctgctggtgggggcacccctagaggacggacacaatggggcc
atatacgtctaccacggccagggcatacacatcatccacaactacaaacagcgtatcgca
ggatcgtccctgtccccctctctgcagtattttgggcgcagtgtgagtgccagattagac
ctggatggagatggtctgttagacctggctgtgggggcccagggcagtgctgtactactc
agttctcgtagtatagtccagatcaacatgagtttgtccttccagccccactccatcaac
gtcatccagaagacgtgtcagagaggagggagggagtctgcctgtctcaacgctacagcc
tgcttcctggctctgtcccgttcccctggaactcacagcagcagcttcgagttgtcggtg
gtggccatgttggatgagagaaagttgacagcgagggcgttgtttgacgacagcaaccag
agacagacacaactgggggtcagagttcacacaggacagaccgtctgccacaacctgccc
ttccatgtgtttgacacagcagactacatccgtccaatcagcttctccctgcgctttaag
atcaacgacacagagagcggcccagtgctggacgaaggctggcccaccaccttcaagaga
tcgattgcgttcttcaaagactgtggtgaggatgatgtgtgtgtcactgatctggtgctg
caggctcatatggacatctctgggacaagacagcagccctatgtgatccgtagccctcgc
agacgtctggctgtagaagtccagctgcagaacagactggagaacgcctacaacaccagc
ctgacactgcactactcacgcaacctccacttctctagtctcagtatacgggaagatacc
cagttgaaaattgagtgtacatctctcagttccaacagtcattcctgtaatgtcagctat
cctgtgttccgctcccactccaaggtgaacttcatgttagagtttgagttcagctgtacg
tctctgctcagtaaagtccagatgaaactcacagttgccagtgacagtgtggagagagag
gctacgttgggagacaacagtgttcagctccagactgtggttcagtacgaacctgacctc
ttcatcaccagtgactccaatctgaaccgttatgaggtccacccaaccagaaccatatca
gaggcaataggaccagagttctacacacacttcaggctgcagaacctgggctgttacagt
gtgagtaacctggagttgaggctgagcctgccctctgtagcagctggagaccgagtcttc
atggctgttactgaggtcttctcttacaacgtgacaggggtgaattgcagtgtagacagt
cacgtgtcccagcagaaggacagacagagagatgtacgaccactacatcctgaagacatg
caacagactgacctactgaactgcagcaggtcgtggtgtgtggaggtggtgtgtgaggta
cagcagctgcatcgaggacagaccgctctcatacgagtcagccgcagggtccacgacaac
ttcttcagacaggctaagtttaagatggtgaggatagtgagtgcctatcgtctggctgct
caggaatctaacctggtcactctggggagtggcgccatctggagggagacggtgttggag
gtactaaaggggcgggccatccctatttctctctggattctgataggtagcatcattgga
gggcttctgctattggccctcatcatcttcgcaatgtggaagctggggttcttcactcgt
aaacagataaaggacgaggaactcgaggactga
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