Oncorhynchus gorbuscha (pink salmon): 124006370
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Entry
124006370 CDS
T07892
Symbol
scarf1
Name
(RefSeq) scavenger receptor class F member 1
KO
K24318
scavenger receptor class F member 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124006370 (scarf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124006370 (scarf1)
Membrane trafficking [BR:
ogo04131
]
Endocytosis
Phagocytosis
Scavenger receptors
124006370 (scarf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_Teneurin
EGF_2
Motif
Other DBs
NCBI-GeneID:
124006370
NCBI-ProteinID:
XP_046172305
LinkDB
All DBs
Position
LG19:48036463..48046550
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AA seq
962 aa
AA seq
DB search
MGLFLTGLGLLLCCSLSSPQRLAPSERNVCQDLRDPSTLVCCTGWRQQGEECTIPVCDGE
QACQQDEVCVYPGVCRCRPGYYGAHCKTRCPAEFWAPDCREMCKCHPHGRCDPITGECTC
LPNRWGPLCQNACRCGRHGHCHPVHGNCTCDEGWWTPTCTKQCQCYPGTSTCDPLTGRCH
CASGYWGQKCSLRCSCYKSSCQQKTGACECQKEWWGPSCDRRCNCDLKHSECRAVSGECL
CQPGYKGAVCNEPCGPGEYGSGCTLSCGHCKRGQSCSVVDGVCTACEPGWNGTRCDRPCK
RGYHGNDCHEACPRCRNGEPCNPRTGACSRCDPGWTGPRCGKPCFNRTFGDACRFLCSPC
FHGHCDHVTGSCVCEPGFQGQSCNITCPDQLYGFNCSSVCDCGEGTACHPETGACPYSGH
RALIAGLLVPLILVLLGLVCCCCCCGGPTDGKDRVAVGDGGTSVRMKYHVYNVLANVSSA
VPCISVWSSGLPRVTVSHHDPELTFNHSFIEPPSSGWVTDGSSFDSDEETGEALYCVPPR
EDIPAVAGGEFQEFQHEMSSKCNMFPDPSAFSVSAEDMSLPFGIPRTSSNAKSKRPSVSF
AEGTRFSPKERRGSAQDLTPGAPRTKPKSPWGVLMLSALQAHGGKASEGEEMETGEGGVD
GCGGGTGPLEEPGSSGEAGDPDVDRYTATPSQAMSTLQVPGALVGRRRTISNAAVNRKGG
QAPGSTSNGQQAEIDKGMDKVTTVYVTVGKAGVGRPLSKLELPSSEGPVQAMLRRLGSLQ
RHKDQEGGTRSKGKIPGAEGITKPPRRKLGARASVWEQGGHPPLGVEGPVGEGVPMRKPS
RRKQHAHHSSPAVMGNTDDGTNTHTPLEGANATIMPTRPLSSILKSVPEVAGLEVMGERS
AVRGENGDPGMQTETDSGYLTVGPAGVVTNAVSLSEVIAYDGVVASVDDGANLYENVMIM
HS
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgggcctgtttctgacgggtctaggattactgctctgctgttccctgtcctcccctcag
agactggctccctcagagagaaatgtctgccaggacctcagggatccctccactcttgtc
tgttgtactggatggaggcaacagggagaggagtgtactatacctgtgtgtgatggtgag
caagcctgccagcaggatgaggtgtgtgtatacccgggcgtctgtcgctgtcgccctggc
tactatggagcccactgcaagacacgctgccctgcagagttctgggcaccggactgccgt
gagatgtgcaaatgccaccctcacgggcgctgtgacccgatcacgggcgagtgcacatgc
ctccccaaccgctgggggccactctgccagaatgcctgcagatgtggccgccatgggcac
tgtcaccctgtgcacggcaactgcacctgcgatgagggctggtggacgcccacctgtacc
aagcagtgccagtgctacccaggcacctccacctgcgacccactgaccggcaggtgtcat
tgtgcctcagggtactggggtcagaagtgcagccttcgctgtagctgctacaaatcgtca
tgccaacagaagacgggggcgtgcgagtgccagaaggagtggtggggtccgtcgtgtgat
cgccgctgtaactgtgacctgaagcacagtgagtgtcgtgccgtcagcggggagtgttta
tgtcagcctgggtacaagggagccgtctgtaatgagccgtgtggacctggggagtatggc
agcgggtgtacactgagctgtggccactgtaaacgaggccagtcgtgctctgtggttgac
ggtgtctgtacggcctgtgagcctgggtggaacggcacacgctgtgaccggccgtgcaag
cggggttaccatggaaacgactgccatgaggcctgcccacgctgcaggaacggtgaacca
tgcaaccccaggacgggggcgtgttcacgatgtgatccaggatggaccggacccagatgt
ggcaagccatgctttaacagaacattcggggatgcctgccgcttcctgtgcagcccctgt
ttccatggccactgtgatcacgtgacaggaagttgtgtctgtgagcccgggttccaggga
cagagttgtaatatcacctgtccagaccagctgtatggctttaactgttcctctgtctgt
gactgtggagagggcaccgcctgtcacccagaaacgggggcgtgtccatacagtggtcac
agggctctgatcgctggtctcctggtccctctgatcttggtgctgctgggtctggtctgc
tgctgctgctgctgtggaggacctactgacggcaaagacagggtagcagtgggtgacggt
ggtacctctgtccgtatgaagtatcatgtgtataacgtcctggccaacgtgagctctgct
gtaccctgtatctctgtctggtcctctgggctacccagagtcacagtgtcccaccacgac
cctgagctgacattcaaccacagtttcatagagcctccctcctcaggctgggtgacagac
ggatcctccttcgacagtgatgaggagaccggagaggctctctactgtgtcccccccaga
gaagacatccctgcagtggcgggcggtgagttccaggagttccagcatgagatgagttct
aagtgtaacatgttccccgacccctctgccttcagcgttagtgcagaagacatgtccctc
ccctttggcatcccccgcacctccagcaacgccaagtccaaacgcccctccgtctccttc
gccgaaggcaccaggttcagccccaaggagcgccgaggctctgcccaggacctgactccc
ggggccccccgcaccaaacctaagtccccctggggggtcctgatgctgtcagccctccag
gcccatggagggaaggcctcagagggggaagagatggagacaggtgaggggggtgtggat
ggatgtggaggtgggactggaccattggaagaaccaggatccagtggtgaagcaggggac
cccgatgtggacaggtacacggccaccccgtcccaagccatgtctaccctgcaggtgcct
ggagcattggtaggaagaagacgcaccatatccaacgctgctgttaacagaaagggtggg
caagcaccagggtccacatccaatggccagcaggcagagatcgataaagggatggacaag
gtgaccacagtgtacgtgacagtgggtaaggcgggggtggggaggcccctgtctaaacta
gagctccccagctcggagggcccggtacaggccatgctacgcaggctaggcagcctccag
agacataaagaccaggaggggggaactaggtccaagggtaagatcccgggggcggagggg
atcacgaagccacccaggaggaagctaggggccagggccagtgtgtgggagcagggaggt
cacccacccttgggggtggagggtcctgtaggggaaggtgtacctatgaggaaacccagt
aggaggaaacagcacgcccaccacagctcacctgctgtcatgggaaacactgacgatggc
actaacactcacaccccactagagggtgccaatgccaccattatgcctactaggcccctg
tcctccattttgaaaagtgtgccagaggtcgctgggttagaagtcatgggtgaaaggtca
gcggtgaggggagagaatggtgaccctgggatgcagactgagactgacagtggatatcta
acagtcgggccagctggagttgtaaccaacgctgttagtctgagtgaagtcatcgcctat
gacggagtggtggccagtgtggacgatggagctaacctatatgagaatgtgatgataatg
cattcctaa
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