Oncorhynchus gorbuscha (pink salmon): 124006618
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Entry
124006618 CDS
T07892
Name
(RefSeq) uncharacterized protein LOC124006618
KO
K06793
versican core protein
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04514
Cell adhesion molecules
ogo04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
124006618
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124006618
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ogo00535
]
124006618
00536 Glycosaminoglycan binding proteins [BR:
ogo00536
]
124006618
04091 Lectins [BR:
ogo04091
]
124006618
Proteoglycans [BR:
ogo00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
124006618
Glycosaminoglycan binding proteins [BR:
ogo00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
124006618
Lectins [BR:
ogo04091
]
C-Type lectins
Lecticans
124006618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
EGF
hEGF
EGF_TEN
Lectin_C
V-set
EGF_CA
EGF_3
Motif
Other DBs
NCBI-GeneID:
124006618
NCBI-ProteinID:
XP_046172626
LinkDB
All DBs
Position
LG20:6647958..6685566
Genome browser
AA seq
2759 aa
AA seq
DB search
MDIKTQGFVEMLHLRHLLCLVFLCRAFAEQDPSWRMKVEKAAPASGSLAGRVVLPCHFSI
TPTTHNPSTQGPEDQLRIKWTKLEEDGERVVLVAQGGVIKVEQEYKGRVSVPNHPQALGD
ASLIVASLRASDAGLYRCEVMHEMEDTQDTVHLNVSGVVFHYRSASSRYTFSFPGAVGAC
RAAGATIATAEQLTAAFEDGLDQCDAGWMADQTVRYPITKPRPGCMGDMMHRPGIRTYGL
RDPKETYDVYCYADKLHGEVFYAPIRYKLTLRQAKRACETQGAVLASPGNLFAAWRGGLD
RCDYGWLSDGSARYPISVPRPQCGGGLLGVRTLYRFPNQTGFPKPIDRHGAFCFKGKEPE
IPPPGPVTTTDARRADTATDEPRTTYHAGGPNLTGSTPADRADRTAADKPHQTTGQDRSE
HTGGPHDTAYTGTVRHYTATDGTHAAKDEHRTTDRETTGKDRTTQGGDRTTDQKTDFSVG
TTQFPEYDGEDFVPDLTKVESLPPMGDPLFPLQLPPLPTIRSQPTRPQLDINQGGDKEEG
EVQTGSGRGESSGSGEGSSSDGESEGDDRGVMTPTQGFTADTGLGSDPSRPGQPGYPGHP
KGYPGLVTPEHGPSGGDKVTGQQPAVVYKEEEGKSSRTTTHSQPGATESYGMDKSVAIHE
EASPTKPPIHLIIVDVHDRNQSVNHILQVLGHPLGGNGDFQSPLIPAFPVTQSEAIRGSE
DSDGMPPIPFPPMLSFVNGKHQQEARGDQFEMATPVYGELGGEMERGEEKSPTPFDYDSI
HTGETSESTATDTDGDTNRHTAKDTDRGTGRDRTGKTESSNGTTPNSQHTSPVSSPVSAS
STGYPHTSPDGVSPDEDMEGSGGRTQEGSAEDTRPTPASDSQSGVVTDETEIGGAESMTH
APSHTHSAHTKDSNTIDTYTKDTHTPSHAHSTRTKDTNTIDTDTKDTHTPSHAHPTRTKD
TNTIDTYTKDTHTTSQTEAGDFEGSSSAEEEGSAQEVYPPEDTRYTSPGGPGAIEAPPVG
PGVEGQVTVTPKPEVRPGTMPTQAGETVGVHPGHHTDSSTQHRDHSHQPVTQEKDLSTHT
KAQTRHPSTDGKDQTNQHNTHDSNHSTDTKDRSMYPPTHSTQRPTHVRDPTKNQTTYHKD
HSTHTKDQTKQPSHPRFPPTHHKNQTSHSTTDQKTPQHLNQTHTPPAHPSTPPPSRPIPD
WALTPQTPRPEGEEFVDYDQVIGPPLLEAGPHAPKEPQSTYQPETGSDYYIVDQTVDVRG
LQQCTVNVCLNQASCYQRGRASICVCPTGYTGQRCETDVDECQSNPCRNGATCMDGVNSF
TCLCLPSYTGGLCEQGTRPGTRPGTMPTQAGETVGDYPGHHTDSSTQHRDHSRQPATQEK
DLSTHTKAQTRHPSTDGKDQTNQHNTHDSNHSTDTKDRSMYPPTHSTQRPTHVRDPTKNQ
TTYHKDHSTHTKDQTKQPSHPRFPPTHHKNQTSHSTTDQKTPQHLNQTHTPPAHPSTPPP
SRPIPDWALTPRPEGEEFVDYDRVIGPPLLEAGPHAPKEPQSTYQPETGSDYYIVDQTVD
VRGLQQCTVNVCLNQASCYQRGRASICVCPTGYTGQRCETDVDECQSNPCRNGATCMDGV
NSFTCLCLPSYTGGLCEQGTRPGTRPGTRPGTRPGTMPTQAGETVGDYPGHHTDSSTQHR
DHSRQPATQEKDLSTHTKAQTRHPSTDGKDQTNQHNTHDSNHSTDTKDRSMYPPTHSTQR
PTHVRDPTKNQTTYHKDHSTHTKDQTKQPSHPRFPPTHHKNQTSHSTTDQKTPQHLNQTH
TPPAHPSTPPPSRPIPDWALTPQTPRPEGEEFVDYDRVIGPPLLEAGPHAPKEPQSTYQP
ETGSDYYIVDQTVDVRGLQQCTVNVCLNQASCYQRGRASICVCPTGYTGQRCETGTRPGT
RPGTMPTQAGETVGDYPGHRTDSSTQHRDHSRQPATQEKDLSTHTKAQTRHPSTDGKDQT
NQHNTHDSNHSTDTKDRSMYPPTHSTQRPTHVRDPTKNQTTYHKDHSTHTKDQTKQPSHP
RFPPTHHKNQTSHSTTDQKTPQHLNQTHTPPAHPSTPPPSRPIPDWALTPQTPRPEGEEF
VDYDRVIGPPLLEDDPHAPKEPQSTYQPETGSDYYIVDQTVDVRGLQQCTVNVCLNQASC
YQRGRASICVCPTGYTGQRCETDVDECQSNPCRNGATCMDGVNSFTCLCLPSYTGGLCEQ
GTRPGTRPGTRPGTRPGTMPTQAGETVGVHPGHHTDSSTQHRDHSRQPATQEKDLSTHTK
AQTRHPSTDGKDQTNQHNTHDSNHSTDTKDRSMYPPTHSTQRPTHVRDPTKNQTTYHKDH
STHTKDQTKQPSHPRFPPPTIRTKPTPPAHPSTPPPSRPIPDWALTPQTPRPEGEEFVDY
DRVIGPPLLEAGPHAPKEPQSTYQPETGSDYYIVDQTVDVRGLQQCTVNGCLNQASCYQR
GRASICVCPTGYTGQRCETDVDECQSNPCRNGATCMDGVNSFTCLCLPSYTGGLCEQDTE
VCEYGWQKFRSQCYKHITHRRTWDAAERECRLHGAHLVSVLSQEEQLYVNGLGHDYQWIG
LNDKMFERDFRWTDGSIMQYEHWRPNQPDSFFQSGEDCVVMIWHEGGQWNDVPCNYHLTF
TCKKGTVSCGQPPVVKDARVFGSMKPRYEINTLIRYHCKNGFIQRYPPTIRCRDNGQWDS
PKVTCMSPTTYQKSFASRKHTDNHSHNQNQYNHNDHSQFNYQNQQYNSQNNQGQQKTNN
NT seq
8280 nt
NT seq
+upstream
nt +downstream
nt
atggatatcaagacccaaggttttgtagagatgttgcatctcaggcacctgctctgtctt
gtgtttctctgtcgtgcgttcgctgaacaagatccatcatggaggatgaaggtagagaag
gctgcccccgctagtggctctctggctggcagggtggtgctaccatgccacttctccatc
acccccaccacccacaaccctagcacacagggcccagaggaccagctgaggatcaagtgg
acaaagctggaggaagatggggagcgtgtggtgctggtggcccagggaggagtgatcaag
gtggagcaggagtacaagggcagggtgtcggtgcccaaccacccccaggcattaggcgac
gcctcgctgatcgttgccagcctgagggctagcgatgctgggctgtaccgctgcgaggtc
atgcatgagatggaggacacccaggatactgttcatctcaatgtcagcggtgtggtgttc
cactacaggtctgcttctagccgctataccttttcctttcccggggctgttggcgcgtgc
cgcgcggccggggcaaccatcgctacggccgagcagctgactgccgccttcgaggacgga
ctggaccagtgtgacgccggctggatggccgaccagacagtcagatacccaatcacgaag
ccccgtcctggttgcatgggcgatatgatgcacaggcctgggatcaggacgtatgggctc
agagaccctaaagagacctacgacgtctactgttacgcagacaaactacacggtgaggtg
ttctatgctcctatccgttacaagctgacccttcgccaggctaagcgtgcatgcgagacg
cagggggcggtgctcgcctcccctggcaacctgttcgccgcgtggcgcggaggcctggat
cgctgtgactacggctggctgtcagacgggagcgcccgctaccccatctcggtccccagg
ccccagtgtggaggaggactgctgggggttcggactctgtaccgattccccaaccagact
ggcttccccaaacctattgacagacatggagcgttctgcttcaagggtaaggaaccagag
atcccccctcccgggcctgtgacgaccacggatgctcgcagggcagacacggccacagac
gaacctcgcactacctaccacgcaggcggaccaaaccttacaggctcaactcccgcagac
agagctgaccgcacagctgcagacaaaccacaccaaacaactggccaagacagaagtgag
catacaggtggaccacacgataccgcttatacaggcacagtccgacattacactgccact
gacggaacacacgccgccaaagacgagcatcgcaccactgaccgcgagacgacaggcaaa
gacagaactacccagggaggagacaggacgacagaccaaaagacagacttctctgttggt
accactcagttccctgagtacgatggggaggactttgtcccagacctaaccaaggtagag
tcattgccccccatgggtgatcccctgttccccctgcagctgccccctctccccaccatc
cgctcccagcccacccgcccccaactagacatcaaccaggggggagacaaggaagagggg
gaagttcagacaggctcaggcaggggggagagcagtgggagtggggaggggagcagtagt
gatggggagagtgagggggatgaccggggagtgatgactcccacacagggcttcacggca
gacacaggactggggtcggacccctcacgcccaggacaaccagggtacccaggacatcca
aaggggtatccagggttggtcaccccagagcacggcccctcaggtggggacaaagtgaca
ggacagcagcctgctgtggtctacaaggaggaggagggcaagagctctagaacaacaacc
cacagccaaccgggagccacggaatcatacggcatggacaaatcggtggctatccatgag
gaggcctcgcccaccaaaccaccaatccacctcatcatcgtcgacgtgcacgaccggaac
caatcagtgaaccacatcctgcaggtcctgggacaccctttagggggtaatggagatttc
cagtcccctctcatcccagccttcccagttacccagagtgaggccattcgcggcagtgag
gactctgacggcatgcctcccatcccttttcccccaatgctcagcttcgtcaacgggaaa
caccagcaggaggctagaggagaccagtttgagatggccacaccagtctatggtgaactg
ggaggagagatggagcgaggagaggagaaaagccccactccctttgactatgactccatc
catactggagagaccagcgagtccactgctacagacacagacggagataccaacagacac
acagcgaaagacacggacagaggcacaggcagagacaggacaggaaagacggagagctcc
aatggaacaaccccgaattcccaacacacatccccagtctcttccccagtctcagcctca
tccactggttacccccatacttccccagatggcgtctcgcctgacgaggacatggaaggg
tcaggcggccgtacccaggagggctcagcagaagacacccgacccacccccgcctcagac
agccaatcaggcgtggtcacagacgagacggagattggaggggcggagagtatgacacac
gccccgtctcatacacactctgctcacactaaggactcaaacactatagatacttacacc
aaggacacacacactccatcacacgcacactctactcgcactaaggacacaaacactatt
gatactgacaccaaggacacacacactccatcacacgcacaccctactcgcactaaggac
acaaacactattgatacttacaccaaggacacacacactacatcacagacagaggcagga
gacttcgaggggtcttcatcggcagaagaggaaggctcggcacaggaggtgtacccacct
gaagacaccagatacactagccccggcggtcctggagccatcgaagctcccccggtgggg
cctggggtggagggacaggtgactgttacacccaaaccagaagtcagaccaggaaccatg
ccaacccaggcaggagagactgtaggagtccaccctggacatcacacagactcttctaca
cagcacagagaccactcccaccaacctgtcacacaggagaaagatctctccactcatact
aaagctcagaccagacacccctctacagatgggaaggaccaaaccaatcaacataacaca
cacgatagcaatcactccacagacactaaggatcgatccatgtacccccctacacactcc
acccagcgtccaacacacgttagggatcccaccaagaaccagaccacataccataaagat
cactccacccacactaaggaccaaaccaaacagccctctcaccctagattcccccccacc
caccataagaaccaaaccagtcactctaccacagatcagaagaccccacagcacctgaac
caaacacacacaccccctgcacacccctccactccacctccctcccgccccatccccgac
tgggccctgaccccccagaccccccggcctgagggggaggagtttgtggattatgaccag
gtgattggtcctcctctgctggaggccggcccccatgctcctaaagaacctcagtccaca
taccaacctgaaacaggatctgactactacatcgtggaccagactgtcgatgtcagagga
ctgcagcagtgcacagtgaatgtgtgtttgaaccaagcgtcctgctaccagagaggcaga
gccagcatctgtgtgtgtccaactggatacactggacagcgctgcgagacagatgttgat
gaatgccagtccaacccatgtcgtaatggagccacctgtatggacggagtcaactccttc
acctgtttgtgtctacccagctacacaggagggctctgtgaacaaggaaccagaccagga
accagaccaggaactatgccaacccaggcaggagagactgtaggagactaccctggacat
cacacagactcttctacacagcacagagaccactcccgccaacctgccacacaggagaaa
gatctctccactcatactaaagctcagaccagacacccctctacagatgggaaggaccaa
accaatcagcataacacacacgatagcaatcactccacagacactaaggatcgatccatg
tacccccctacacactccacccagcgtccaacacacgttagggatcccaccaagaaccag
accacataccataaagatcactccacccacactaaggaccaaaccaaacagccctctcac
cctagattcccccccacccaccataagaaccaaaccagtcactctaccacagatcagaag
accccacagcacctgaaccaaacacacacaccccctgcacacccctccactccacctccc
tcccgccccatccccgactgggccctgaccccccggcctgagggggaggaatttgtggat
tatgaccgggtgattggtcctcctctgctggaggccggcccccatgctcctaaagaacct
cagtccacataccaacctgaaacaggatctgactactacatcgtggaccagactgtcgat
gtcagaggactgcagcagtgcacagtgaatgtgtgtttgaaccaagcgtcctgctaccag
agaggcagagccagcatctgtgtgtgtccaactggatacactggacagcgctgcgagaca
gatgttgatgaatgccagtccaacccatgtcgtaatggagccacctgtatggacggagtc
aactccttcacctgtttgtgtctacccagctacacaggagggctctgtgaacaaggaacc
agacctggaaccagaccaggaaccagaccaggaaccagacctggaaccatgccaacacag
gcaggagagactgtaggagactaccctggacatcacacagactcttctacacagcacaga
gaccactcccgccaacctgccacacaggagaaagatctctccactcatactaaagctcag
accagacacccctctacagatgggaaggaccaaaccaatcagcataacacacacgatagc
aatcactccacagacactaaggatcgatccatgtacccccctacacactccacccagcgt
ccaacacacgttagggatcccaccaagaaccagaccacataccataaagatcactccacc
cacactaaggaccaaaccaaacagccctctcaccctagattcccccccacccaccataag
aaccaaaccagtcactctaccacagatcagaagaccccacagcacctgaaccaaacacac
acaccccctgcacacccctccactccacctccctcccgccccatccccgactgggccctg
accccccagaccccccggcctgagggggaggagtttgtggattatgaccgggtgattggt
cctcctctgctggaggccggcccccatgctcctaaagaacctcagtccacataccaacct
gaaacaggatctgactactacatcgtggaccagactgtcgatgtcagaggactgcagcag
tgcacagtgaatgtgtgtttgaaccaagcgtcctgctaccagagaggcagagccagcatc
tgtgtgtgtccaactggatacactggacagcgctgcgagacaggaaccagaccaggaacc
agaccaggaactatgccaacccaggcaggagagactgtaggagactaccctggacatcgc
acagactcttctacacagcacagagaccactcccgccaacctgccacacaggagaaagat
ctctccactcatactaaagctcagaccagacacccctctacagatgggaaggaccaaacc
aatcagcataacacacacgatagcaatcactccacagacactaaggatcgatccatgtac
ccccctacacactccacccagcgtccaacacacgttagggatcccaccaagaaccagacc
acataccataaagatcactccacccacactaaggaccaaaccaaacagccctctcaccct
agattcccccccacccaccataagaaccaaaccagtcactctaccacagatcagaagacc
ccacagcacctgaaccaaacacacacaccccctgcacacccctccactccacctccctcc
cgccccatcccagactgggccctgaccccccagaccccccggcctgagggggaggagttt
gtggattatgaccgggtgattggtcctcctctgctggaggacgacccccatgctcctaaa
gaacctcagtccacataccaacctgaaacaggatctgactactacatcgtggaccagact
gtcgatgtcagaggactgcagcagtgcacagtgaatgtgtgtttgaaccaagcgtcctgc
taccagagaggcagagccagcatctgtgtatgtccaactggatacactggacagcgctgc
gagacagatgtcgatgaatgccagtccaacccatgtcgtaatggagccacctgtatggac
ggagtcaactccttcacctgtttgtgtctacccagctacacaggagggctctgtgaacaa
ggaaccagacctggaaccagacctggaacaagaccaggaaccagaccaggaaccatgcca
acccaggcaggagagactgtaggagtccaccctggacatcacacagactcttctacacag
cacagagaccactcccgccaacctgccacacaggagaaagatctctccactcatactaaa
gctcagaccagacacccctctacagatgggaaggaccaaaccaatcagcataacacacac
gatagcaatcactccacagacactaaggatcgatccatgtacccccctacacactccacc
cagcgtccaacacacgttagggatcccaccaagaaccagaccacataccataaagatcac
tccacccacactaaggaccaaaccaaacagccctctcaccctagattccccccacccacc
ataagaaccaaaccaacaccccctgcacacccctccactccacctccctcccgccccatc
cccgactgggccctgaccccccagaccccccggcctgagggggaggagtttgtggattat
gaccgggtgattggtcctcctctgctggaggccggcccccatgctcctaaagaacctcag
tccacataccaacctgaaacaggatctgactactacatcgtggaccagactgtcgatgtc
agaggactgcagcagtgcacagtgaatgggtgtttgaaccaagcgtcctgctaccagaga
ggcagagccagcatctgtgtgtgtccaactggatacactggacagcgctgcgagacagat
gttgatgaatgccagtccaacccatgtcgtaatggagccacctgtatggacggagtcaac
tccttcacctgtttgtgtctacccagctacacaggagggctctgtgaacaagacacggag
gtgtgtgagtatggctggcagaagttccggagccagtgttataagcacatcacccaccgt
cgcacctgggacgctgccgagagggagtgccgtctccatggagcccacctcgtcagtgtc
ctgtcacaggaggagcagctgtatgtcaacggtctgggccatgactaccagtggatcggt
ctaaacgacaagatgtttgagagagacttccgctggactgacggcagcatcatgcaatat
gagcactggcgtcccaaccagccagacagtttcttccagtctggagaggactgtgtggtg
atgatctggcacgagggaggacagtggaatgacgtaccctgcaactaccacctcaccttc
acctgcaagaagggcacagtctcttgcggccagccaccagtagtgaaggatgctcgtgtg
tttggttctatgaagcctcgttatgagatcaacactctgattcgttaccactgtaaaaac
ggcttcatacagagatacccccccaccatccgctgccgtgacaacggccaatgggacagc
cccaaggtcacctgcatgagccccactacctaccagaagtctttcgcttccaggaaacac
accgacaatcacagtcataaccagaatcagtacaatcacaatgatcacagccagttcaac
tatcaaaaccaacaatacaacagccaaaacaatcaaggccaacagaagaccaacaactaa
DBGET
integrated database retrieval system
