Oncorhynchus gorbuscha (pink salmon): 124006912
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Entry
124006912 CDS
T07892
Name
(RefSeq) SR-related and CTD-associated factor 4-like
KO
K13167
SR-related and CTD-associated factor 4
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124006912
03041 Spliceosome [BR:
ogo03041
]
124006912
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124006912
Spliceosome [BR:
ogo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR proteins
124006912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
124006912
NCBI-ProteinID:
XP_046173057
LinkDB
All DBs
Position
LG20:39687386..39732763
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AA seq
1135 aa
AA seq
DB search
MDAVNAFNHELFSLMDMKPPISRAKMISITKSAIKAMKLYKHVVQIVEKFIKKCKPEYKV
AGLYVVDSIVRQSRHQFGMDKDVFGPRFTKNITGTFENLCLCPTEERSKIVRVLNLWQKN
GVFKMEIIQPLLVMATSGSSSVADTEMDDPDPGFPSSPSPVKGKVTSVRENTVVAPVSQL
QNSEAFVAVAQLFQSSKGQQLQQIFQNFQQNPLKPQTHPFPPQTHSHPQPHPQPQPHPQP
HPQPHLQPQPHPQPHLQAQPHPQPHPQAQPHPQPHPQPQPHPQPQPHPQPQPHPQPQPHL
QPHLQAQPHLQPHLQPQPHPQPQPHLQPHLQAQPHPQPQPHLQPHLQAQPHPQPHLQAQP
HPQPQHQAQPQPPANLHHLHSQLHLQSLTPALGTTAQRLPLPSSELSQQRTAFDKVATLL
DRFDYDDEPEGADESKKDQTSFTQQPPGFPQHFQQHMMGMVQDLPRQISLPPNGQLQGYG
LLPGQAYPGMVVPPGQPLPGTGPPGFPGGYPPNKDAFGQHVGQQEQDMNMDLDPPSMKDG
RHRPDGRKSPSGSRSPKRRRSRSISRTHRSRDRRRHSPRSRSQERREREKEKEKERERRQ
KGLPQPKADTLSVCSTTLWVGQLDKRTQQQDVACLLEEFGQIDSINMIPPRGCAYIVMVH
RQDAFRALQKLSRGSYKVNQKAIKIAWALNKGIKAELKLYWDVELGVTFIPWSKIRQDQL
EDVREGGTLDPDTLDPEWRCVQNNQETPEEFRQNGRSEPLATVEDTAGTTPVDTPVQVHP
VQVQSMGGVGSLQQHPSFPPGPGPPGGPPMGLPPPSFPPGVPPGPPPSFMRPGPRFNPMQ
MMPPGFLPPGSMPLGPSGPPPSAAGGVGVVELSLDPAGLGNQVPGPPGGSPGGPIPLSGG
LLGARPGMIPLQRPPVHSPGPVLPPPHMQRFPPPHGGPHGPHPPRGPPHHNMPPQMMPPN
RGPHPHMIHHDGPPLPPGGPRGFGMGMPPSHPMRGPFPPHGPLPGGPPPPFMRGGPRGPD
GPEEIEGRGPFRGERPGFRDRDPDRERERDWERDRERFGGGGRRFEDGGRGGGWGERMEE
PFQSQQKVESEPSGFPVEVTATEPPVACVSEPTSQPRPIEKTQAAETQETEAVIG
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggacgccgtaaacgcttttaaccacgagctgttctctttgatggacatgaagccccca
atatctcgagccaagatgatatccatcactaagtcagccatcaaagctatgaagttatac
aaacacgtggtccagattgttgagaagttcattaaaaagtgtaagccggagtacaaggtg
gcaggtctatatgttgtagactccatcgtccgacagtcccgacatcagtttggcatggac
aaggacgtgttcgggccacggttcaccaagaacatcacgggaacgtttgagaacctctgt
ctctgtcccactgaagaacggagtaagatagtgcgtgtgttaaatctgtggcagaagaat
ggtgtgtttaagatggagatcatccagcctcttctagttatggcgacatctggttccagc
agtgttgcagacaccgagatggacgacccagacccaggtttcccctcatccccatcacca
gtaaagggtaaggtcacctcagtaagggaaaacactgttgtggcgcctgtctctcagctt
cagaactctgaagcattcgtcgctgtcgctcagctcttccagtcctcaaagggacaacag
cttcaacaaattttccagaactttcaacaaaatccgttaaagcctcagactcatcccttc
ccaccccagacccacagtcacccccaacctcatcctcaacctcaacctcatcctcaaccc
catccccagccgcatctccagcctcaaccccatccccagcctcatctccaggctcaaccc
catccccagcctcatccccaggctcaaccccatcctcagcctcatccccagcctcaaccc
catccccagcctcaaccccatccccagcctcaaccccatccccagcctcaaccccatctc
cagccgcatctccaggctcaaccccatctccagccacatctccagcctcaaccccatccc
cagcctcaaccccatctccagccacatctccaggctcaaccccatccccagcctcaaccc
catctccagccacatctccaggctcaaccccatcctcagccgcatctccaggctcaaccc
catcctcagccccagcaccaggctcaaccccagcctcctgccaacctccaccacctccac
tcccagctccatctccagtccctgacccccgccctgggtacgaccgctcagcgactcccc
ctcccctccagcgagctcagccagcagagaacagcgtttgacaaggtggctactctgttg
gaccgttttgactatgacgatgagcctgagggagccgacgaatcaaagaaggaccagacg
tcttttacccagcagcctccaggtttcccccagcactttcaacaacacatgatgggcatg
gtccaagacctcccacgccagatatctctgcctcctaacggccagctccagggctatggt
ttgctgccgggccaggcctacccaggaatggtggttcctccaggtcagcccctccctggt
acaggacctccaggcttccctgggggataccctccaaacaaggacgcctttggccaacac
gtgggccagcaggaacaggatatgaatatggacctggaccccccctccatgaaggatgga
agacaccgaccagatggcaggaagtcaccatcgggatctaggtctcctaagaggaggcgg
tcgcggtccatctctagaacacaccggtccagagaccgccgcagacactccccgcggtca
cgctcccaggaacgcagggagagagagaaggagaaggagaaggagagggagagacgacag
aaaggactgccacagcccaaggctgacacgctgagcgtgtgtagtaccactctgtgggtg
ggtcagctagacaagagaacccagcagcaggatgtagcctgtctactggaggagtttgga
cagatagactccatcaatatgattcctcctcgaggttgtgcctacatcgtcatggtccac
agacaggatgcattcagagctctgcagaaactcagcagaggatcctacaaagtcaaccag
aaagccatcaagattgcgtgggccttgaataaagggatcaaggcggagttgaagctgtac
tgggatgtggagctgggcgttaccttcatcccctggtcgaagatacgacaggaccagcta
gaggacgtcagagagggagggacgctggacccagacacactggacccagagtggaggtgt
gttcagaacaaccaggagacaccagaggagttcagacaaaatggccgctctgagccgtta
gccacagtggaggacacagctgggaccacacctgtagacactcctgtacaggtgcatccg
gtccaggtgcagtcgatgggaggtgtaggttctctccagcagcacccctccttcccccct
gggcctggccctcctggtggtccccccatgggcctgcctcccccttccttcccccctggt
gtcccgcccggacctcctccctccttcatgagaccgggaccaaggttcaaccccatgcag
atgatgccacctggtttccttccgcctgggtcgatgccattgggcccctctggcccccct
ccctcagcagcagggggtgtaggggtagttgaactgtctctggatccagccggcctgggt
aaccaggtgcctggtcctccagggggctcaccaggcggtcccatcccgctgtctggtggt
cttcttggggctcgccccggcatgatccccctccagcgccccccagtccactctcctggt
ccggtcctccccccacctcacatgcagcgcttccctcctccccacggtggcccacatggc
ccccacccccctcggggccctccccaccacaacatgccaccccagatgatgccacccaac
aggggcccccaccctcacatgatccaccacgatggcccccctctgccgcccgggggccca
cgtgggtttgggatgggcatgcccccttcccatcccatgaggggtcccttccctccccac
gggcccctccctggggggcccccaccacccttcatgagggggggccctcgagggccagat
gggccggaggagattgaggggagggggcccttcaggggggagagacctgggtttagggac
agggatccagacagggagagagaaagggactgggagagggatagggagaggtttggtgga
ggggggaggcggtttgaggatggagggagaggaggaggatggggagaaaggatggaggaa
cccttccaatcccaacagaaggtggaatcagaaccctctggattccctgttgaagtgact
gctactgaaccgcctgtggcgtgtgtatctgaacctacaagtcaacctcgccccatagag
aaaacacaagcggctgagacacaggagactgaggcagtcataggctag
DBGET
integrated database retrieval system
