Oncorhynchus gorbuscha (pink salmon): 124006933
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Entry
124006933 CDS
T07892
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124006933
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124006933
Spliceosome [BR:
ogo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124006933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
OB_NTP_bind
HA2_C
R3H
DEAD
Ank_2
HA2_N
AAA_19
Ank
ATPase
nSTAND3
AAA_22
PhoH
AAA_16
AAA_7
AAA_30
SRP54
Motif
Other DBs
NCBI-GeneID:
124006933
NCBI-ProteinID:
XP_046173076
LinkDB
All DBs
Position
LG20:complement(19501413..19526956)
Genome browser
AA seq
1456 aa
AA seq
DB search
MSRPSNASPKPAMAKSKHSGGGGPRGKGLKDIRIDEEVKIAVNISLERFQYSEQKEMEFP
SSLSSTERAFIHRFAQSLGYISKSRGKGSSRTLTIRKKDGSETAQSIMTFNLSHNSKHAV
RSLLQRFPITNKERTDLLPRTERGLSVAIEAESSRDKNRTSGRLNNGIPQVPQKRGPSEL
DFFRSSLPVYERQEEIVQVIKDNRVVLVVGETGSGKTTQIPQFLLDDCSRNGIPCRIFCT
QPRRLAAIAVAERVAAERGESIGQTIGYQIRLESRVSPKTLLTFCTSGVLLRTLMAGDTT
MSTVTHVIVDEVHERDGLSDFLLTKMRDMLQTMPNLKLILSSAALDVELFLRYFGSCPVI
HIKGRPFEVKQLFLEDILRTTGYSNKDMRKYKKEIQREEKQQMSLTEWCKVREGGSRQEP
QREKTTSASCVLQENDLLDDGGDSVFTQLNEKDVASLDPWLLKEMDACISDIFLNQDADA
FIQLFNLILSENVSVDFMHSETSATPLMVAAGRGFLSQIEQLLSMGASVRIKASNGWTAL
DWAKHFQQAEVVDLLESYLSSLEAGKLDEWSLVQAATTEMSPEDQELLKEYHHSFDDERV
DLDLIMHLLHNICTSSEDGAVLIFLPGYDEIVGLRDRILYDDKRFTDHSQSYQVFTLHSN
MQTSDQKKVLRNTPAGIRKIILSTNIAETSITVNDVVFVIDAGKVKEKSFDALNHVTMLK
MVWISKASSLQRKGRAGRCRPGICFHLFSRLRFNNMLEYQVPQLLRMPLQELCLHTKLLA
PITCSIAEFLSKAPEPPPILIVKNAVQMLKTIDAMDPWEDLTELGYHLADLPVEPHLGKM
VLCAVVLKCLDPILTIACTLAHRDPFVLPSQASQKRASMLCRKRFTAGTFSDHMALLRAF
QAWQKARTDGWERSFCEKNFLSQATMEIIIGMRTQLLGQLRAIGFVRARGGGDIRDVNLN
SENWSVVKAALVAGMYPNLIHVDRESCSLSGAKEKRVRFHPTSILSQPQPHKKIPPANGQ
VAAVQSLPTDWLIYDEMTRAHRIASIRCCSVVSPITIAIFGGCAKLPSTALQEPAVQKDD
VVNESSDSEIEDRSTANLAQMKIDEWLNFKLDKEMVGLVFQLRQKWHGLFLRRIRSPSKP
WSQLDEATIRALVSVLGAEDHTAGLQQPTGIGQRPRPMSSEELPQTSSWRNANSRRTLGP
TASPDIPELPDEPLIPAPSHTATDRSSRLSPASALLHPKAPHGSRDRGSRRPTDDHSSTP
KSPESASLGFPSPCPSPSPTSSGKCSKSPSPRPGVAPVRYFIMKSSNLRNIDISQQKGIW
STTPSNELKLNRAFLESSLVFLVFSVQGSGHFQGYARMTSVIGQERCQDWGSTGLGGVFS
VEWTRKESLPFQCTQQLLNPWNDNKKVQISRDGQELEPQAGGQLLQLWERLSGKPQQHEV
QQDQFLSSDNHRLHTT
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atgtcacgtcctagtaatgcctcacccaaacctgccatggccaaatcaaaacactctggt
ggtggggggcccaggggcaaagggctgaaagacatacgcatcgacgaagaagttaagatt
gctgtgaacatctcccttgagaggtttcagtacagtgagcaaaaagaaatggagtttcct
tcctccctgtctagtactgagagagccttcatccatcgctttgcacagtcccttggatat
atctctaaaagcagaggaaaaggatcaagccggaccctcactatcagaaagaaggatggc
tcggagacggcccagtccatcatgactttcaacctttcccacaattccaagcacgctgtg
cggagcctgctgcagcggttccccatcaccaacaaggagcgcacagacctactgcctcgc
actgagaggggcttgtctgtggccattgaggctgagagcagccgtgacaagaaccggacc
agtgggcggctcaacaacggcattccccaggtgccccagaagaggggcccatctgaactg
gacttcttccgtagctcacttcctgtgtacgagcgccaggaggagatcgtccaggtcatc
aaagacaaccgtgttgtcctagtggtgggggagaccggctcggggaaaactacacagatc
ccacagttcctcctggacgactgcagccgaaatgggatcccctgtcggatcttctgcaca
cagccacggcgtctggcagccatcgctgtggcagagcgggttgctgcggagagaggagag
agcatcggtcagaccattggctaccagatccgcctggagagcagagtttctcctaagacg
ctgctgaccttctgcacaagcggagtcctgctgagaacactgatggccggagacaccaca
atgtccactgttactcacgtcattgtggatgaggttcacgagcgggatggtctgagtgac
ttcctgctgaccaagatgagggacatgctccagacgatgcctaatctgaagctcatcctg
tccagtgctgccctggacgtggagctgttcctccgctactttggctcctgtcctgtcatc
cacatcaaaggaagaccatttgaggtgaagcaacttttcctggaagacatcttgaggaca
acaggctattcaaacaaagacatgaggaaatacaaaaaggagatccagagggaggaaaag
caacagatgtctttgacagagtggtgtaaggtgcgtgagggtggctcccgccaggagccc
cagagggagaagaccacctcggcctcctgtgtccttcaggagaacgacctgctggacgat
ggaggggacagtgttttcacccagctgaatgagaaagatgtggcatcattggacccgtgg
ctgctgaaggagatggatgcctgcatctcagacatcttcctcaaccaggacgctgacgcc
ttcatccagctcttcaatctcatcctgagtgagaacgtcagcgtggacttcatgcacagt
gaaacgagcgccactccactcatggtggcagcaggtcgaggcttcctcagtcagattgag
cagcttttgagtatgggagccagcgtcagaatcaaggcctccaatggctggactgcgctg
gactgggccaagcacttccagcaggcagaagtggtggacctactagaatcctacctctca
tccctggaggcggggaagctggacgagtggtccctggtgcaggctgccaccacagaaatg
agtccggaggaccaggagctgctcaaggaataccaccacagctttgacgatgagagggtg
gacctggacctcatcatgcacctgctacacaacatttgcaccagctcagaagacggtgcc
gttttgatcttcctccccggatacgatgagatagtgggtctgagggaccgtatcctgtac
gacgataaaagattcacagaccactctcaaagctaccaggtctttacactccactccaac
atgcagacctcggatcagaagaaagtgctgaggaacactccagctggtatccggaaaata
attctctccactaacatcgcagagacgagtatcactgtcaacgatgtcgtatttgtcatt
gacgcgggaaaagtaaaagagaagtcctttgatgccctgaaccatgtaaccatgctgaag
atggtgtggatctccaaggccagctctcttcagaggaagggcagagctggacgttgccga
ccagggatctgcttccacctcttcagtcgtctccgctttaacaacatgctggagtaccag
gtgccccagctactaaggatgcccctgcaggaactctgtctccacaccaagctgttggcc
ccaatcacctgttccatcgctgaattcctatccaaagcacccgaaccaccccccatcctc
attgtaaaaaacgcagtgcagatgctcaagaccatagacgccatggacccgtgggaggac
ctgacggagctgggctaccacctggctgacctgcctgtggagccccacctgggaaagatg
gtgttatgtgccgtggtgctcaagtgcctagaccccatcttgaccatcgcctgcacgctg
gcccatcgcgacccctttgtgctgccctcccaggcctcccagaagagggcatccatgctg
tgccggaaacgctttactgcagggacattcagcgaccatatggccctgctccgagccttc
caggcttggcagaaggcacgcacagatggctgggaaaggtccttctgtgagaagaacttc
ctgtcccaggctaccatggagatcatcatagggatgaggacccagctgctaggacagctc
cgagccataggctttgtgcgggcacggggcggcggggacatccgtgacgtgaacctgaac
tctgagaactggtcagtggtgaaggcagccctggtggcgggaatgtaccccaacctgatc
catgtggaccgtgagagctgttctctgtctggggccaaggagaagagggtccgcttccac
cccacctccatcctcagccagccacagccccacaagaagatccccccagccaatggtcag
gtggcagccgtccagtccctgcccaccgattggttgatctatgacgagatgacgcgagcc
cataggatagccagcatccgctgctgctctgtggtctcccccataaccatagccatcttc
gggggctgtgccaaactgcccagcacagccctacaagaacctgctgttcagaaagatgat
gtggtgaatgagagcagtgacagtgagattgaggatcgctccacagccaacctggctcag
atgaagattgatgagtggctcaacttcaaactggacaaagagatggtgggtctggtgttc
cagctgaggcagaagtggcacggtttattcctgaggaggatccgctctccctccaagccc
tggtcccagctggatgaggccaccatacgggccctggtgtcggtgctgggggctgaggat
catactgcagggctgcagcagcccacagggattggccagaggccccggcccatgtcctct
gaggagctcccccagacctcctcctggaggaacgccaacagcaggagaaccctcggcccc
acagccagccctgacatcccggagctccctgacgaacccctcattcccgccccctcacac
acagcgacagacaggtcctcaagactctcccctgcctcggccctcctgcaccccaaagcc
ccccatggcagcagggacaggggctccaggcgccccacagacgaccactcctccaccccc
aagtctcctgaatcggcttcactcggcttccccagcccctgtcccagcccctcacccacc
tcatcaggaaagtgctccaagtctccgtccccgaggccaggcgttgcaccggtgcgttac
ttcatcatgaagagcagcaacctgaggaacattgacatctcccagcagaaaggcatctgg
tccaccacgcccagcaacgagctcaaactcaacagagccttcctggagagcagccttgtc
ttcttggtcttctctgtgcagggctctggacacttccagggctatgcacggatgacatcg
gtcattggacaggagcgctgtcaggactggggctccacagggctggggggggtcttcagt
gtggagtggaccaggaaggagagcctgcccttccagtgtacacaacagctgctcaacccc
tggaacgacaacaagaaggtgcagatcagcagagacggacaggagttggagccccaggct
ggaggccagctgctgcagctatgggagagactctcagggaaaccacagcaacatgaggta
caacaggaccaatttttatcatcagataaccacaggttacacacaacgtga
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integrated database retrieval system
