KEGG   Oncorhynchus gorbuscha (pink salmon): 124007243
Entry
124007243         CDS       T07892                                 
Name
(RefSeq) LOW QUALITY PROTEIN: U4/U6.U5 tri-snRNP-associated protein 1-like
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124007243
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ogo03041]
    124007243
   04121 Ubiquitin system [BR:ogo04121]
    124007243
Spliceosome [BR:ogo03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    124007243
 Complex C
   U4/U6.U5 tri-SnRNP specific factors
    124007243
Ubiquitin system [BR:ogo04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    124007243
SSDB
Motif
Pfam: SART-1 HIND
Other DBs
NCBI-GeneID: 124007243
NCBI-ProteinID: XP_046173618
LinkDB
Position
LG20:25351139..25358353
AA seq 780 aa
MGSSKKHKEKGRDKDKDAEERGHREHKKHRHKDRERDKERDGNREREKRKRSRSKERSAR
GSERDGRSKGERSTGEPRVKKEKVEPGCEGTEIAPQSASGDASLTIEETNKLRAKLGLKP
LEMTDTTKELGTKEQPIVAETINPVYIKQQKEMREKLAALKEKRLLNKKLGKVKTLAEDD
WLDDTVAWVERSRKMSKEKELAEKRAKLLQEMDEEFGVSNLVEEEFGQTKKVAYSSRDLK
GLTVQHKMESFNEGETVILTLQDKGVLDEEGGDVLVNVGLVDKENAEKNVELKKKKPDYK
AYEEDESVDDMVTFKPRTVLGKYDEEIDGEKKKSFRLSKGGCAEGERERELQTIRETLRN
QAQSLEMPVLAIASEYYTPQEMVGFKKTKQRVRKIRKKEKALPDELQLDDTRNTDFGSRA
RGRGRKQLDEEGQEGVKERVIIPGLDVPQQSDDIRMADMDISDDENFIPPDPAVLEEDEA
EQELQKQLEKQRKLKQKQLLKNSGEKVAEQVRGLARGDDSDNEEDKNNLNIVFNATSEFC
RTLGDIPTYGLSGNREDQEDIMDFEQEAERDGAGGSDSDGDENVGWSIVNVDEEQKQPDF
ATASTTILDEEPIVNSGLAAALALCKNKGLLDTQMQKISRVRAPTGALPNDNYSIEDKMT
IDDKYSRREEYRGFTQDFKEKDAYKPDVKIEYVDESGRKLTPKEAFRQLSHRFHGKGSGK
MKTERRMKKLEEEALLKKMSSSDTPLGTVALLQEKQKSQKTPYIVLSGSGKSMNANNITK
NT seq 2343 nt   +upstreamnt  +downstreamnt
atgggttcgtcgaaaaaacacaaggaaaagggccgtgataaagataaggatgccgaagaa
cgtggtcaccgtgaacacaaaaaacaccgtcataaggaccgggagagggacaaggaacga
gatggcaaccgagagcgggagaaaaggaaacggtccagatcgaaggaaaggagtgcacgg
ggttccgagagagacggtcgcagtaaaggggagaggagtactggggagcctcgcgtaaag
aaagaaaaagtggagcccggatgtgagggcacagaaattgcaccacagtctgcaagtgga
gatgcctcgcttaccattgaagagacaaacaagctgagggccaagcttggtctgaagcct
ctggaaatgactgacaccactaaagagctcggcacgaaggagcagccaattgttgcagag
acgatcaacccagtgtacattaaacagcagaaagagatgagggagaaactggcagctctg
aaggaaaagaggctcctcaataagaaactggggaaagtgaagaccttagcagaagacgac
tggctggatgacactgttgcctgggttgagaggagccggaagatgtccaaagagaaagaa
ctggcagagaagagagccaagcttctgcaggagatggatgaggagtttggtgtgagcaat
ctggtagaggaggagtttggacagaccaagaaggtcgcttacagctcccgggacctaaag
ggtctcactgtccagcacaagatggagtcatttaatgaaggggagactgtcattctcaca
ctgcaagacaaaggtgtgcttgatgaagaggggggcgatgttcttgtaaatgtgggtctg
gtggataaagaaaatgctgagaagaatgtggagttgaagaagaaaaagcctgattacaaa
gcctatgaagaggacgagagtgtggatgacatggttacgttcaagccgcgtactgtgctg
ggcaagtatgatgaggagatcgatggagagaagaagaagagtttccggctgagcaaaggg
ggctgtgctgagggggaacgggaacgggagctccagaccatcagggagaccctgaggaac
caggcccagtccttggagatgcctgttctcgctattgcctcagagtactacacaccccag
gagatggtgggctttaagaagaccaagcagcgcgtcaggaagatcaggaagaaggagaag
gcattgcctgatgagctccaattagacgacacacgcaacaccgactttggctccagggct
cggggtcggggtcgcaagcagttggatgaggagggccaggaaggggtgaaggagcgtgtc
atcataccgggactagatgtaccccaacagtcagatgacatcaggatggcggacatggac
atcagtgacgatgagaacttcatcccccctgatccggctgtgctggaggaggatgaggca
gagcaggagctgcaaaagcagctggagaaacagcgaaaactcaaacagaaacagctgctc
aaaaactctggggaaaaggtggcagagcaggtccgagggcttgcaagaggggacgacagt
gacaatgaagaagacaagaacaacctgaacattgtgttcaatgccacctctgagttctgc
agaactctgggtgacatccctacctacggcctgtcgggaaaccgagaggaccaggaggac
atcatggatttcgagcaggaggcggagagagatggcgctggcggttcagactccgacggg
gatgagaatgttggctggagcatcgtcaacgtggatgaggaacagaagcagcctgatttt
gccacagcctcgaccaccatcctggatgaagaacccattgtcaactctgggctggctgct
gccttggcgctctgcaagaataagggtctcttggacactcaaatgcagaagatatcccgt
gtccgtgcgcctaccggtgccctgcccaatgataactacagcattgaggacaagatgacg
atagatgacaagtacagtcggagggaggaatatagaggcttcacccaggacttcaaggag
aaggacgcctacaagccagatgtcaagattgagtatgtggatgaatctggacggaagctc
actcccaaagaggctttccggcagctctcacatcggttccatgggaaggggtctggcaag
atgaagactgagaggaggatgaaaaagctggaagaggaagcgctgctgaagaagatgagc
agtagcgatacccctctgggaactgtcgctttgcttcaggagaaacagaagtcacagaaa
accccctacattgttctgagtgggagtgggaagagcatgaatgcaaacaacatcaccaaa
taa

DBGET integrated database retrieval system