Oncorhynchus gorbuscha (pink salmon): 124007294
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Entry
124007294 CDS
T07892
Name
(RefSeq) pre-mRNA 3'-end-processing factor FIP1-like isoform X1
KO
K14405
pre-mRNA 3'-end-processing factor FIP1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124007294
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124007294
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124007294
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Fip1
TSX
HNH_repeat
Motif
Other DBs
NCBI-GeneID:
124007294
NCBI-ProteinID:
XP_046173704
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Position
LG20:complement(28534683..28547219)
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AA seq
526 aa
AA seq
DB search
MATELTISESAVRLSEPHQVEDEEHWLYGGENTKKQNAPEGLPGPGDSLQLTSMGNTEEK
DAASQEAKGTEGEEEEDSDSDDEDDVKVTIGNIKTGAPSYMGTGMNLSLKPARCYASAAA
IKLQPKGIDIETLGAFNGAPVVEVEMDIFEDKPWRKPGADLSDYFNYGFNEETWKGYCER
QRRLQLGLEPSAPLSFENKITVQQGRATTLEKDTEPSSIKPDYKPDFPPASVLALAANRL
KAGPPPNRKLGGTIDVIGGQTGAIRRVEGRRREMQEQNPIQVLGDHGNKVQPLVPPAGPP
LPLPMGMPPPHFLHPPPPVSGMPPPLHPPGMPPPSITGLFLPPLAPPPTLMMPPVDSSRA
PLPFGYNSGESSFISYPPVSSSHMPWGSVLEKGGEDRGRGHWEYQGSHRERDRDQERGHT
PTTSEYNEDDRYHYYSHDRESEREFEHSYLHVHDSSGGLSREREEHQRDRRHRDKEESGK
HKSSKRKQHDDEGEGHRRHKHKKSKRSKEDKDVPEDMLGRGEEHKD
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atggctactgagttgaccatttcagaatcagcagtccggttgagtgagccccatcaggtt
gaagacgaagagcattggctgtatgggggggaaaacaccaagaaacaaaatgcccccgag
ggtttgcctgggcctggtgactcccttcagctgacttcaatgggcaataccgaagagaag
gatgctgcatcacaggaagccaaaggtactgaaggtgaagaggaggaggacagtgacagt
gatgacgaggatgacgtcaaggtcaccattggtaacatcaaaactggtgcaccttcctac
atgggaacgggcatgaacctgagcttgaaaccagctcgttgctatgcctcagcagcagcc
attaagctgcagcccaaagggatagatatagagacactaggggccttcaatggtgcacca
gttgtggaggtggaaatggacatctttgaggacaaaccatggagaaagccaggtgccgac
ctctcagactacttcaactatggttttaatgaggaaacgtggaagggatactgtgagaga
cagcgcagactacagcttggcctggagcccagtgctcctctcagttttgaaaacaagata
acagttcaacagggaagggcaaccactttagaaaaggatacagaaccgtcttccatcaag
cctgattacaagccagactttccccctgcttcagtcctggccctcgctgccaacagactg
aaggcaggacccccacctaacaggaaattgggtggaactattgatgtgattggtggacag
acaggagccattcgccgggttgaaggccgaaggagggaaatgcaggaacagaatcctatc
caggtgctcggagaccatggtaacaaggtacaacccttggttccaccagcaggacctcct
cttcctcttccaatgggtatgcccccaccacacttcctgcatcctcctccaccagtatct
ggtatgcccccacctcttcaccccccaggtatgcccccaccttccattacaggcctgttt
ctacctccccttgctcctccccctaccttgatgatgccacctgtggatagcagtagagcc
cctcttccttttggatacaacagtggagagtcaagcttcattagctaccctccagtctca
tcatcgcacatgccttggggctctgtgctggagaaggggggggaagacagaggacgaggg
cattgggagtaccaaggaagtcatagagaaagagacagagatcaagagagaggtcatact
ccaaccaccagcgaatataatgaggatgaccgttaccactactacagccatgatcgagag
agtgagcgagaatttgagcacagttaccttcatgttcacgacagcagcggtgggcttagc
agggagagggaggagcatcagcgagacagacgccatcgtgacaaggaggagagtggtaaa
cacaagtcttccaaacgcaagcagcatgatgatgagggggaggggcatcgcagacacaag
cacaagaaaagcaaacgcagcaaagaggacaaggatgtcccagaggatatgttggggcgt
ggggaagagcacaaggactga
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