Oncorhynchus gorbuscha (pink salmon): 124007840
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Entry
124007840 CDS
T07892
Name
(RefSeq) SH3 domain and tetratricopeptide repeat-containing protein 1-like
KO
K24313
SH3 domain and tetratricopeptide repeat-containing protein
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124007840
Membrane trafficking [BR:
ogo04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
124007840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_1
TPR_8
TPR_2
TPR_7
TPR_NPHP3
SH3_1
TPR_10
SH3_9
TPR_11
TPR_14
Motif
Other DBs
NCBI-GeneID:
124007840
NCBI-ProteinID:
XP_046174575
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All DBs
Position
LG21:complement(13330497..13349153)
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AA seq
1372 aa
AA seq
DB search
MKKLIMSTAEQEVEPVAVVNRMDTSTRHYRRELSAEDHNHDPVKKGTRSRKMERSSSRGA
GTSEDGFPTALPMLLAMVEGPDKLPADEGSQEVLRGKLRLLEADSIEVNALFMELSARLV
SINCEENAIFVSFKTFEEIWRFTTYYTMGFLGQCMENLLLDQDFWLSSLDQEYFAIEISI
QEETLNLMYKGILMQEGSLFASCSSTQMFDSSTSGRDLYLEQGDIALFEPPFLGSGWTVL
SLGDGARGTKPKPALEPVIPFHQWFLKSCAENILVGSGKPACDFPCQFATGSCVATVEYD
AGGPDELSLEQGDRIIIVGLLVSCFEWFTGRLERTGEVGLVMTTLVRPADSLCEASDIFL
EKEERLFFNLKEDQIKEETIALLKKINQNDVGHVYKLDLIAQPDSLNEPTQNGSQGNMDA
HQQAELRRKIEEILLKGKMKSKVPQATVTSNGTLEDQSETSKTTLPSGPHFTIQPVEEGT
TTNQEKFLPLLSFLGGSNYKSEFGALYGQTPERLLATFTGHSDDVDKLVAYLGVARETAR
KKRLHWSQSRLCFLLGKLCAGRSKFSQARVYFEEALSVPRDIFTDMLMLASIYANLAVIY
LMQKNTEKYLALSERIAALLMGIPYCVSTVEKDSEVLKFILKKAVLSHNKMAEARACFLL
AKLHWRRGEAADTVPFLERLLVLLAEPPGVRSVVPSHGYLSLAGLYSQLSLPHLCVSSAR
RATMHPSARLADCLNGMGLVLENTDRLYGIRKQDVAIPAQVAPYLSQSLSFTGRLDGVGG
TGDHTLSQALTLCLSQLFQEHGMLGHAVRSMHTLIDHHCAPSSSSGTSSIPERNIALVWL
AWLHICNSQPEVSLDILDSVLASMPEHCTTPQEGLVHNMRGVALRSMGDLRRAVESYQTA
IDVCEECEDRANWAVAEANLGLLCLKAGAKRLAEQHLTEAVEMLSALEGQEHEVNFTTVL
LELGQYYVNQRHLDRGKIYYEWALLMAIKSNHSDSQLSVTRRLCHLYRTVCPDEAQCIIY
NEHQLALLVTRGDRRQEGEVLETISQLYLSLGTERARRSALDYTKRSLGIFIDLGRREKE
AYAWLQAGKIYHLLGQTELVDLYLQVAQDVGVSTGDTHFILQLLEAAGDVFFNSSTEREK
AVCLYGDRALPIAVKTSSTEVRLRLSNKLVELLLQMKLYGEAVEYAQTALDISVKLGNRL
NERVAFHRLATLYHCLGQFELAEHYYLKALSLCPTPLEFDEETLYYVRVYRTLGDIIFYD
LKDPYDAAGYYHLALAAAMDIGNKKSQLQLCTRLATIYHNFLVDRELSLFFYQKARAFAS
DLNVRRINLSPDQIFSSMSQYKTNRVNIQEPRNKSPPNGHIGLKLVRRGERL
NT seq
4119 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagttaattatgtcaaccgcggaacaagaggtggaacccgtggcggtggttaac
cgtatggatactagcactcgccattaccggagagagctctcagcagaagaccacaaccat
gatccggtaaaaaaggggaccagaagtagaaaaatggagcgctccagctccagaggagca
ggcacatccgaagacggcttcccaacagcgctgcccatgctgttggccatggtggagggg
ccggacaagcttcctgcagacgaggggtcacaggaagtgctgagggggaaactccgcctc
ctggaggccgacagcatagaggtcaacgctctcttcatggaactgtcagctcggcttgtt
tccatcaactgtgaagaaaacgccatatttgtctcattcaaaacatttgaagagatatgg
aggttcaccacgtattacacaatgggctttctgggtcagtgcatggagaacctgctgttg
gaccaggacttctggttgagttctctggaccaggagtactttgccatagagatctctatc
caagaggagactctcaacctcatgtacaaaggcatccttatgcaagagggttccttgttc
gccagctgcagctccacccagatgtttgacagctccacctctggtagagacctctacctg
gagcagggggacatcgccctgtttgagcccccgttcctgggctcggggtggaccgtactc
tccctgggggatggagcccgggggaccaaacccaaaccagccctggagcccgtcatcccc
ttccaccaatggttcctcaaatcatgtgcggagaacatcttagttggcagtggcaagcca
gcatgtgatttcccctgccagtttgccactggctcttgcgtggccactgttgagtatgac
gccggtgggccagacgagctaagcctggagcagggcgaccgcatcatcattgtgggcctg
ttggtgtcgtgcttcgagtggttcactggcagactggagaggacaggagaagtgggattg
gtgatgacaacactggtcagaccggccgatagcctttgtgaggcgtctgacattttccta
gagaaagaagagaggttgtttttcaacctgaaagaagatcagattaaagaggagacaatc
gccttgctgaaaaaaatcaaccagaatgatgttggacatgtctacaaacttgatctgatt
gctcaaccggattctctaaatgaaccaactcaaaatggttcccaaggcaacatggacgct
caccaacaagcagaactgaggaggaagattgaagagattctgctaaaagggaagatgaaa
tcgaaggtgcctcaagcaactgtgacgtcaaatggaactctggaggaccagagtgagacc
tctaagactacattacccagcgggcctcacttcaccatccaaccagttgaggaaggcacc
accaccaaccaggagaaattccttcctcttctatccttcctgggtggcagcaactacaag
tcagagtttggcgccctctatggccaaactccagaacggctcctcgccactttcactggc
cactccgacgacgttgacaaattagtggcgtatctaggtgttgccagggaaactgccagg
aagaaacgtctccattggtcccagagccgcctctgtttccttttggggaaactctgcgca
ggacgatcaaaattttcccaggctcgcgtctacttcgaggaggcccttagcgtccctcga
gacatcttcacggacatgctaatgctagctagcatttacgctaacctagcggtgatctat
ctcatgcagaaaaatacagagaaatacttggctctgtcggagcggatcgctgcgctgcta
atgggcatcccttactgcgtctcgacagtggagaaagactcagaagttctgaaatttatc
ctgaagaaggcggtgcttagtcacaataaaatggcagaagccagagcatgcttccttttg
gccaagctccactggaggcgaggagaggcggcggacaccgttcccttcctggagaggctt
ctggttctcttggcggagccccctggtgtccggagcgtcgtgcccagccatggctacctc
agcctggcggggttgtacagccagctctccctccctcacctctgtgtcagctcggccagg
agagccacgatgcatccgtctgctaggctagccgattgtctgaatggaatggggctggtt
ctggagaacacagacagactctatgggatccggaagcaggacgtcgccattccggctcaa
gtggctccatatctcagccagtcgctctccttcactgggcgattagatggagtcggtggc
actggtgaccacactctaagccaggctctaacactctgcctatcccagctgtttcaggaa
catgggatgctaggtcacgccgtacgctccatgcacactctcatagaccatcattgtgcg
ccgtcatcatcatcgggcacctctagcattcctgaacgaaacatcgcccttgtgtggcta
gcatggctccacatctgtaacagccaaccagaggtttctctagacatcctcgactcagtg
ctggcctccatgccagaacattgcactaccccacaggaaggactggtccacaacatgagg
ggtgtagccttgcgaagcatgggggacctgaggagggcagtagagagctaccagacggcc
attgatgtgtgtgaggagtgtgaggaccgggctaactgggcagtagcagaagctaacctg
gggttattgtgtctgaaggctggggctaagaggttagcggagcagcatctaacagaagct
gttgagatgttgtcagcgctggagggacaagaacatgaggtgaactttaccaccgtgctg
ttggagctgggacagtactatgtgaaccagagacacctggacagaggaaagatctactat
gaatgggctctactcatggctatcaagtcaaaccactcagacagtcagttgagcgtgacg
cgacgcttgtgccacctttacagaacagtgtgtccggatgaggcccagtgcatcatctac
aacgaacatcagctggccctgctggtgacccggggagacaggagacaggaaggagaggtg
ttggagaccatcagccagctataccttagtctggggacagagagggctaggcggtctgct
ctggactacactaagcgtagcctggggatcttcatagacctgggccggagggagaaggag
gcttacgcctggttacaggctgggaagatataccacctgctgggccagactgaactggtg
gacctttatttacaggtggcccaagatgtgggggtgagtacgggagacacacacttcatc
ctacagctgctggaggcagcaggggacgtcttcttcaacagctcaacggagagagagaag
gctgtctgcttatatggggaccgtgccctgcccatcgcggtgaaaaccagcagtacagag
gtcagactgagactgtctaacaagctggtggagctgctgctgcagatgaagctgtatggg
gaggctgttgagtacgcccagaccgccctggacatcagtgttaaactgggaaaccgtctg
aacgagcgtgtggcgttccaccgcctggctactctgtaccactgtctgggtcagtttgag
ctggctgaacactactacctgaaggccctctccctctgccccacgcccctggagtttgat
gaggaaaccctgtactatgtcagggtgtatcggacgctgggggacattatattctatgac
ctgaaggacccgtatgacgccgcagggtactaccacctagcacttgctgcagccatggac
atcggcaacaagaagtcccagctccagctctgcacccgattggctaccatctaccacaac
ttcctggttgatcgggaactgtccctcttcttctaccagaaagcacgagcgttcgcctcc
gacctcaatgtacgacgcatcaacctctcgccagaccagatcttcagcagtatgtcacag
tacaagacgaacagggtgaacatccaggaaccaagaaataagtcaccgccaaacggccat
attggtttgaagttagtgagaagaggggagaggttatag
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