Oncorhynchus gorbuscha (pink salmon): 124008137
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Entry
124008137 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DDX3X-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
124008137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124008137
03041 Spliceosome [BR:
ogo03041
]
124008137
03036 Chromosome and associated proteins [BR:
ogo03036
]
124008137
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124008137
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124008137
mRNA cycle factors
Common to processing body (P body) and stress granule
124008137
Spliceosome [BR:
ogo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124008137
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124008137
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
Motif
Other DBs
NCBI-GeneID:
124008137
NCBI-ProteinID:
XP_046175099
LinkDB
All DBs
Position
LG21:56162469..56183785
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AA seq
710 aa
AA seq
DB search
MSHVAVENLHGLEQQLAVLGLNNADGQGGGTGRTCYIPPHLRNQEASKNDTPGGWDGGRN
NGFVQNGYHDNRMNGGNRYNSGPPRMERGRGGGGFRGGRGGSYNPVQPMQNAGMFGVYDN
KDGGGWNTTKDAYTSFGARPDRGKSAFFNNGGSAPRGSYQRGGFGGSGNSRWVEESRDDE
DWSKPTQANERLEQELFAGGNTGINFDNYDDIPVEATGQNCPHHIDSFQDVEMGEIIMSN
IALTRYTRPTPVQKYAIPIIKNKRDLMACAQTGSGKTAAFLLPVLSQIYTEGPGEALAAQ
KSGGQDNGKYGRRKQYPLALVLAPTRELALQIYEEARKFAYRSRVRPCVVYGGADIGQQI
RDLERGCHLLVATPGRLVDMMERGKIGLDYCNYLVLDEADRMLDMGFEPQIRRIVEQDTM
PPKGIRQTMMFSATFPKEIQILARDFLEEYIFLAVGRVGSTSENITQKVVWVEDGDKRSF
LLDLLNATGKNSLTLVFVETKKGADALEDFLYREGYACTSIHGDRSQRDREEALHQFRSG
RCPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNDKNG
NITKDLLDILVEAKQEVPSWLESLAYEHQHKSNTRGRSKRFTSGGFGARDYRQTSGGGST
GGFGGRGGRQPSGHGGNRGFGGGGGFGGNFYTSDGYGGNYTHGGVDWWGN
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgagtcatgtggccgtcgaaaatttacacggtctagaacagcagcttgctgtcctaggc
ttgaacaatgctgatgggcagggtggaggcactggcaggacctgttacattccacctcat
ttacggaaccaagaggcttccaaaaatgatacgcctggcggttgggacggtggacgcaac
aatggcttcgtgcagaatggttaccacgacaaccgcatgaatgggggcaacaggtacaac
agtggcccgcctcgcatggagaggggcagggggggtggaggtttccgtggcggaaggggc
gggtcctacaacccggtacagcctatgcagaatgccggcatgtttggagtctacgacaac
aaagatggcggcggctggaacacgactaaagatgcctacaccagcttcggcgcacgtccc
gaccggggaaagtctgcttttttcaacaacggcgggagtgcgccccgaggaagttaccag
cgtggagggtttggaggcagtggaaacagccgctgggtggaggagtccagggatgacgag
gactggtccaaacccactcaggccaatgagcgcctggaacaggagctgttcgctggtggc
aacacagggattaactttgacaattacgacgacattcccgttgaggccactggccaaaac
tgcccccatcacattgacagcttccaagacgtggagatgggagagatcatcatgagtaac
attgccctgacccgctacactcggcccactccggtccagaagtacgccattccaatcatc
aagaacaagagggacctgatggcctgcgcccagacaggttccggtaagactgctgcgttc
ctgttgcctgtactgagtcagatctacactgaaggcccaggagaagccctcgctgcccag
aagtctggaggacaggacaatggaaagtatggtcgccgtaagcagtaccccctcgctctg
gtcctggcacccaccagagaactggccctgcagatctatgaagaggccagaaagtttgca
taccggtcccgtgtgcgtccttgtgtggtgtacggaggggctgacattggccagcagatc
agagacctggagcgaggctgtcacctgctggtggctacacctggacgcctggtggacatg
atggagaggggcaagatcggcctcgactactgcaattatctggtgctggatgaggctgac
cggatgttggacatgggttttgagccccagatcagacgcatcgtggagcaggacaccatg
ccccctaaaggcatccgtcagaccatgatgttcagcgctaccttccccaaggagatccag
atcctggcgcgtgacttcctggaggagtatatcttcctggcggtgggacgtgtgggctcc
acctctgagaacatcacccagaaggtggtgtgggtggaggacggtgacaagaggtccttc
ctcctggacttgctcaatgctacaggtaagaactctctgacgctggtgtttgtggaaacc
aagaagggagcggatgccctggaggacttcctgtaccgtgagggttacgcctgcaccagt
atccatggtgaccgctcccagagggaccgagaggaggctctgcaccagttccgctcggga
cgctgccccatcctggtcgccacggcggtggctgcccgtggcctggacatctccaatgtc
aagcatgtcatcaactttgacctgcccagcgatatagaggagtacgtccaccgtattggc
cgtactggacgtgtaggcaacctgggtctggccacgtcgttcttcaacgataagaatggc
aacatcaccaaggaccttctggacatcctagtggaggccaaacaggaagtaccctcctgg
ctggagagcctggcctatgaacaccagcacaagagcaacacccgcggacgctccaagagg
ttcacctctggtggcttcggagccagggactaccgtcagaccagtggcggcggcagcact
ggagggttcgggggtcgtggtggacgccagcccagtgggcatggaggaaaccgtggattt
ggtggcggcggtggctttggaggcaacttctacaccagtgacggctatggaggaaactac
actcatgggggagtggactggtggggcaactaa
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