Oncorhynchus gorbuscha (pink salmon): 124008167
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Entry
124008167 CDS
T07892
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124008167
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124008167
03009 Ribosome biogenesis [BR:
ogo03009
]
124008167
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124008167
Spliceosome [BR:
ogo03041
]
Complex A
U2 snRNP components
U2 related factors
124008167
Complex B
124008167
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124008167
Ribosome biogenesis [BR:
ogo03009
]
Eukaryotic type
90S particles
Helicases
124008167
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
WHD_HA2
AAA_22
AAA_19
AAA_25
SRP54
Cas3-like_C_2
nSTAND3
nSTAND_NTPase5
AAA_29
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
124008167
NCBI-ProteinID:
XP_046175190
LinkDB
All DBs
Position
LG21:complement(25184984..25217258)
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AA seq
730 aa
AA seq
DB search
MMRRDRDRDRDERSKDRDRDRDAKLSGMALNPAVGSAGLSHKQTAMQQQINPFTNLPHTP
RYYEILKKRLQLPVWEYKERFNDILGRHQSFVLVGETGSGKTTQIPQWCVDMVKGLGGPK
KAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTFLKYMTDGMLLREA
MNDPLLERYGVVILDEAHERTLATDILMGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFD
SCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQIHMCEEEEGDCLLFLTGQEEIDEA
CKRIKRDIDDLGHDAGDIKIIPLYSTLPPQQQQRIFEPPPPRKPNGAIGRKVVVSTNIAE
TSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTRPGKCFRLY
TEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALELLNY
VAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSNEILSITAMLSVPQCFVRPTE
ARKAADESKMRFAHIDGDHLTLLNVYHAFKQNHESTQWCYDNFVNYRSLMSADNVRQQLS
RIMDRFSLPRRSTEFTSRDYYINIRRALVTGFFMQVAHLERTGHYLTVKDNQVVQLHPST
VLDHKPEWVMYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYEMGNFPNCEAKRQLERIVA
KLSTKEYSQY
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgatgaggcgagaccgcgacagggaccgcgacgagcggtcgaaggacagggacagagac
cgggatgccaagctctctggcatggccctgaacccggctgttggcagcgcaggcctctcc
cacaagcagacggccatgcagcagcagatcaacccgttcaccaacctgccccacacgccg
cgttactacgagatcctgaagaagaggctgcagctgccagtgtgggagtacaaggagcgc
ttcaacgacatcctgggacgccaccagagtttcgtgctcgtcggagagacgggctccggc
aagaccacgcagatcccccagtggtgtgtggacatggttaaggggttgggcggacctaag
aaggcagtggcctgtacccagcccaggagggtggcagccatgagcgtggcccagagggtg
gccgacgagatggacgtcatgctgggtcaggaggtcggttactccattcgattcgaggac
tgcagctcggccaagaccttcctcaagtacatgacagacggtatgttgctgcgggaggcc
atgaacgaccctctgctggagcgctacggcgtcgtcatcctggacgaggcccacgagaga
acgcttgccacagacatcctcatgggcgtcctcaaagaggtggtccgacagaggtcagac
ctcaaggtcatcgtcatgagcgccacgctggatgccggcaagttccaggtgtactttgac
agctgtccgctgctaaccatcccgggacgcacgcacccggtagagatcttctacacgccg
gaacctgagagggactacctggaggcagccatccgcactgttatccagatccacatgtgt
gaagaggaggagggcgactgtctgctcttcctcactggacaagaggaaatcgacgaggcc
tgcaagcgcatcaagagggacatcgacgacctgggacacgacgcgggtgacatcaaaatc
atcccgttgtactcgacgctgccgccccagcagcagcaaaggatctttgagccgccacca
ccccgcaagcccaacggagccatcgggaggaaggtcgtggtttcgacaaacatcgctgag
acatccctgaccattgacggtgtggtgtttgtaattgatcccggatttgccaagcaaaag
gtgtataaccctcgtatcagagtggagtccctcctggtgacagccatcagcaaagcctcg
gcccagcagagggcggggcgcgccgggaggacacgcccagggaagtgcttccgcctctac
acagagaaggcctacaagaccgagatgcaggacaacacatatccagagattttgaggtcc
aacctgggttcggtcgtgctgcagctcaagaagctaggtatcgacgacttggtccatttc
gacttcatggacccaccagcaccggaaaccctgatgcgggccttggagctgctcaactac
gtggcggcgctcaacgatgacggagacttgacggagctaggctccatgatggccgagttc
cccctagacccgcagctagccaagatggtgattgcctcctgcgagttcaactgctccaat
gagatcctgtccatcacagccatgctgtcagtcccacagtgcttcgtacgacccacggag
gctaggaaggcggccgacgagtccaagatgcgtttcgcccacattgacggagaccacctg
accctcctcaatgtctaccacgccttcaaacagaaccatgagtcgacacagtggtgctac
gacaactttgtgaactacaggtcgctgatgtcggccgacaacgtgcgccagcagctgtcc
cggatcatggaccgcttcagcctgccccgccgcagcacagagttcaccagcagagactac
tacatcaacattcgcagagcgctggtcacaggattcttcatgcaggtagcccatttggag
cgtacaggccactacctgactgtgaaggacaaccaggtggtccagctgcacccctccact
gtgctggaccacaagccggagtgggtgatgtacaatgagtttgtgctgaccaccaaaaac
tacatccgcacctgcactgacatcaaaccagagtggctggtgaaaatcgccccgcagtac
tatgagatgggaaacttccccaactgtgaagccaagagacagttggagcgcatcgtagct
aaactctcaaccaaggaatactctcagtactaa
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integrated database retrieval system
