Oncorhynchus gorbuscha (pink salmon): 124008509
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Entry
124008509 CDS
T07892
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 6-like isoform X1
KO
K14436
chromodomain-helicase-DNA-binding protein 6 [EC:5.6.2.-]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ogo03036
]
124008509
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
124008509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD6-9
Helicase_C
Chromo
BRK
ResIII
DEAD
HDA2-3
HTH_Hrp3
Chromo_MIT1
Motif
Other DBs
NCBI-GeneID:
124008509
NCBI-ProteinID:
XP_046175783
LinkDB
All DBs
Position
LG21:37079963..37195433
Genome browser
AA seq
3025 aa
AA seq
DB search
MKIQKKDKQMSTTPLQKYTPATAASNATAQNAQTPFPRGTLGSKDQIRDLGGGQTNHCMA
NSKHPRMGEASSVSPCAPSSPLNSEEDDGGGGRWAKKKKKQKKKDKCCQALPGSPHKGLE
RDMKPNKKREQKEGKELLLRNFKEPRKVKAPKEVKRGRKPKVQALPHPPSECKSAPSPPR
QRGRKPREQVFQGPVPAEKKKKGKRKSEAVVQEAGERDNVAFLSALAIRGEESIDPLDNT
KRRSGRQVKRRKYNEDLDFKVVDDDGETIAVLGTGRIPALNAATLTWQAEEPPEDEANII
EKILSVRTVKKEASPEDTTEESEEFYVKYRNFSYLHCKWATLEELEKDPRIQQKIKRFRT
KHAQMKHIFVEPNEDLFNPDYIEVDRVLEVAITTDTETGEEVTHYLVKWCSLSYEEATWE
LQEDVDPVKIREFEEIKRIPEFKFVERPQPDKWQKLDKSKDYRNGNQLREYQLEGMNWLL
FNWYNRKNCILADEMGLGKTIQSITFLFEMFSMGLRGPFLIIAPLSTITNWEREFRTWTE
INVIVYHGSQISRQMIHQYEMYHKDQQGNVVLGGYKFHGVITTFEMIMADCPELKKIHWR
CVVIDEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPLQFPSES
LFLEEFGDLKTEEQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNMQKKYYRA
ILEKNFTFLAKGANQHNMPNLINTMMELRKCCNHPYLIKGAEEKILDSFRKTQSPDAWDF
QLQAMIQAAGKLVLIDKLLPKLIAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRV
RGNLRQAAIDRFCKVDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARC
HRIGQSKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQDINRKGSLNGAQQMTKIEVE
DLLRKGAYGALMDEEDEGSKFCEEDIDQILQRRTQTITIETEGKGSTFAKASFVSSGNRT
DISLDDPNFWQKWAKITELEIDSKAEKESLVIDTPRVRKQTRHYNSFEDDELMEFSELDS
DSEERPCRTRRFSERNRRYLRAECFRVEKNLLIFGWGRWKDILTHGRFKWQLAEHDMEVL
CRALLVYCVRHYMGDDKIKSFIWDLITPAKDGHKQDLQNHSGLSAPVPRGRKGKKLKNQL
SVPEMKHADWLVNCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKAEVLGETAAQSLE
GIHASKLEVALPDIDYIEIPAGWWDAEADKSLLLGVHKHGYERYNAMRADSELCFLERVG
MPDVTALSAEQSGGEVVADLTDSACKSDDVKDDPECNQEEGRVEKVDNKDETSSSNDAMD
KHDSVGQDTLSVEMVQETFGQEGMELKGRPLWPAGPALTARLRRLITAYQRFMRREPLRH
DFLLPEGLRAGLGTMSWQLGEEIRRCTVAAAEPDPLFLEWQRRWVMMSEQRWTRREQADF
YRTVSSFGVVYDPEKKAFNWSPFRSFARLERKTDESLERYFSSFVSMCRTACRLPTRKDE
GPLDHNLFVEPITEERAARTLYRIELLRKVREQVLRHPLLGPRLQLCRPSLYLPVWWECG
KHDRDLLIGAARHGLSRTDYYILNDPQLSFLEAHRNYVQNENHQGYQPSVHHAGMAPSPH
HHPCCIYETGLSQCHSPQPPEYGHQAIPSSIHFHSHPNVHGHPPEIVGTGPGGSLGMVSG
PREGFLVCPPLDESLELASLQHEGLASDSLHGKSTKEAFNGFPFNSAQGGQSMLNSYGVQ
GELTSEQSADMDPIISGKLRSDVLVGSSEENGLMAPLLELEQELQVPWDSTDHTGTADVV
GMFNEADPILGAPDLDTEFLDTEEQPGDGGREDGAGGVLDDCLGIASSRSDPGEPLPSSF
MLFKNIDVSEEEPAAEHTNLSASPLPSYTTPPHLSLSHMTLHPHHHNQGDVEQSEENLSD
SDTVAHVPSPDEREAERDVSFEFDKEEMSVDSPSLVGLEQGLDTSCIPCEDTLQEEPCYG
MGMGSPVESCQVALERPGEETLERDTPLGLVEGQAEEPLEISPMDSQEKDPVDGSLEDFG
KDKAPEGPFTGPLEQYDVDPEAAFEGPAEAESTLSEHTLPTVDATYTLPPSSSVPRPQPE
PPLSPRVAGVSQIKLEFPLDPESSESKSDILEPDRTVLTPKLEQTEVLLEVKDKIKEERP
QTPVSVVDSYVEVAQFAVPMSMCEMPDSLQDAREPTIAQLLQEKALYSFSEWPKDRVIIN
RLDSICHAILKGKWPSSSQQYDSPSSLANTCVPNIVHQRAGFISARVQPSQSLNFNIPAP
PVTRLPKYKSRDAGECSQGGWRLTSLPLLQERLVAPPYLPDLKRSRRAFEYKAEVLSKQC
HTGENMPVTVSNSGGALLLNGWQEAAMDLSKAGDLGIGGDAAATVGHMSHQVHPVARKLP
AMSAMHGSVGKDMAGILQAGLIHPVTGQIVNGNLRCDDAIMRRRRGRRRNVEAVDIGFVK
SRGMHVQEKQGRVEVTSHSAVSSTSSPPERPPGTSTPTLSEVVAIDREAANNGLMEWLRQ
NPNCSMEVPTFAPSPGSAILHSFVERPKQRRHRCKDPTKLDVNSLTGEERVPVVHRSTGR
RLGGAMAPAIKELSRWLDANTEYCVAPDWADVVKHSGFLPEGKFTRILTEPVCRDQGPRR
RGRRPRSEMPKPLLSESPMGPLCMNGGLIGSMDLVSLQNLRNVQGIPLTGLMGFPHGFAV
SAGEESKNGLSMLPMMLHGVHGAPHMFSVQGLMGLPPTCSASTSSSTAAVTTTAASSSAA
SSPSRGPGQASSSTGAEGSGIQPGTERKREEKQQGAMGSHSIAAITTTTATSSGSHQAFN
PFLIPGMSHGLLYPHMFLPHGGVMALPGMPPADSSSSPNMKKKRTREEGVVVVDAGSHSH
LQTDSGPPKKHSDGQTGERTAGQAGPEDREQTEDSIQEEGTGHDSHDPPEVNPKNSVEEE
RGTMEISLMEEEKLPEEESVSMGAE
NT seq
9078 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatacaaaagaaggacaaacagatgtccaccacccccttacaaaagtacactcca
gctacagcagcctctaatgcaactgcccaaaatgcacaaactccatttcccaggggtacc
ttgggctctaaggaccagatcagggaccttggtggtggtcagaccaatcactgcatggcc
aactccaagcaccccaggatgggcgaggcgagctcggtcagcccctgcgccccctcgtca
cccctcaacagcgaggaggacgatggagggggcgggcggtgggcgaagaagaagaagaaa
caaaagaaaaaagacaagtgctgccaggcactgccaggctcgccccacaagggcttggag
agagacatgaaaccaaataaaaagagggagcagaaagaagggaaggagctgctgctgcgc
aatttcaaggagcccaggaaggtgaaggcaccaaaagaggtgaagagagggagaaaaccc
aaggtgcaggccctgccccatcctccttcagaatgcaagagcgccccctctcctcccaga
cagaggggccgcaaacccagagagcaagtcttccaagggccggtcccagcggagaagaag
aaaaagggcaagcggaaaagcgaggcagttgtccaggaggctggggagagagataatgtg
gccttcctgtccgcgctggccatcaggggagaggagagcatcgatcccctcgacaacacg
aagcgtcgctcggggcgacaggtgaagcgcaggaagtacaatgaggacctggacttcaag
gtggtggatgacgacggggagactattgccgtgctggggacgggccgtatccctgccctc
aacgctgccactctcacttggcaggctgaggagccccctgaagatgaggcaaacattatt
gagaaaatactgtcggttcgaactgtgaagaaagaggcgtcccctgaggatacaactgag
gagtcggaggagttctatgtcaagtacagaaatttctcctacctgcattgtaaatgggca
acattggaggagttggagaaggaccctcgcatccagcaaaaaatcaagcgcttcaggact
aagcatgcccaaatgaagcacatatttgttgagccgaatgaagacctctttaaccctgac
tacatagaagtggatagagttttggaggtggccatcactacagacacagagacaggagag
gaggtgacacactacctggtgaagtggtgctccctgtcctatgaggaggctacatgggag
cttcaggaagatgtggacccggtgaagattcgggagtttgaggagatcaagagaatccct
gaattcaaatttgtggaaagacctcagccagacaagtggcagaagctggacaaatccaaa
gactatcgaaacgggaaccagctgagagagtaccagctggagggaatgaactggctgctc
ttcaactggtacaacaggaagaactgcatcctggctgacgagatgggccttgggaagacc
atccagtccatcaccttcctctttgagatgttctccatgggcctgcggggacccttcctc
atcatcgcccccctttccaccatcaccaactgggagagggagttccgcacctggactgag
atcaacgtcattgtctaccacggcagccagatcagccgccagatgatccaccagtatgag
atgtaccacaaggaccagcagggaaatgtagtgttgggcgggtacaagttccacggagtg
atcaccacctttgagatgatcatggccgactgtccggagctgaagaagatccactggcgc
tgcgtggtcatcgatgaggctcaccgcctcaagaaccgcaactgtaaactcctggagggc
ctcaagctcatgaacctggaacacaaggtcctcctgacaggcacccccctgcagaactca
gtggaggagctctttagtctgctcaacttcctggagcccctacagttcccctcagagagc
ctcttcttggaggagtttggagatctgaagactgaggaacaggtgaagaagcttcaggcc
atcctaaagcccatgatgctgcggcggctgaaggatgacgtggagaagaacctggcgccc
aaggaggagaccatcatcgaggtggagctcaccaacatgcagaagaagtactaccgggcc
atcctggaaaagaacttcaccttcctggccaagggggccaaccagcacaacatgcccaac
ctcatcaacaccatgatggagctgcgcaagtgctgcaaccacccctacctgatcaaaggt
gcggaggagaagatcctggatagcttcaggaaaacccagagccctgatgcttgggacttc
cagctccaggccatgattcaggcagcggggaagctggtgcttattgacaagctgctgcca
aagctgattgctggcggccacaaggtgctggtcttctcccagatggtgcgctgcctggac
atcctggaggactacctcatccagaggaggtacacctatgagcgcatcgacggcagagtg
aggggtaacctgcgccaggcagcgatcgacagattctgtaaggtggactcggaccgcttt
gtgttcctgctgtgtacccgtgctgggggcctgggcatcaacctgaccgctgcagacacc
tgcatcatcttcgactcggactggaacccccagaacgacctacaggcccaagctcgctgc
caccgcatcggccagagtaaagcagtgaaagtgtacaggctgatcaccaggaactcctat
gagagggagatgtttgataaagccagtttgaagctgggtctagacaaggctgtgctgcag
gacattaatcgaaagggcagcctcaatggggcgcagcagatgaccaagattgaggtggag
gacctgctgaggaagggggcgtatggcgcactgatggatgaggaggacgagggctccaag
ttttgtgaggaggacatcgaccagatcttgcagcgccgcacccaaactatcaccatcgag
acagagggcaagggctccaccttcgccaaggccagctttgtgtcttctggaaacagaact
gacatttccctggacgatcccaacttctggcagaaatgggccaaaataacagagctggag
attgactccaaagcagagaaggagagcctggtgattgatacacctcgtgtgaggaagcag
actcgtcactacaactcgttcgaagacgacgagctgatggagttctctgagctggacagc
gactcagaagagaggccctgtcgcacccgccgcttcagcgagaggaacagacgctacctc
cgcgccgaatgcttccgcgtcgagaagaacctgctcatattcggctggggtcgctggaag
gacatcctaacccacgggcgcttcaagtggcaactggctgagcatgacatggaggtgctt
tgccgggcactgctggtctactgtgtgcgtcactacatgggcgatgacaagatcaagagc
tttatctgggacctcatcacacctgccaaagatggccataaacaagaccttcagaaccat
tctggcctgtccgccccagtgcccaggggacgcaagggtaagaagctaaagaaccagctg
agcgtgcccgagatgaagcatgcagactggcttgtcaactgcaacccagaggtagtgcta
caggatgacagctacaagaaacacctcaagcagcactgcaacaaggtacttctgagggtg
aggatgctgtactacctcaaggcggaggtcctgggagaaactgctgctcagtccctggag
ggcatccatgccagtaaactggaggtggcactccctgatattgactacatcgagatccca
gcaggctggtgggatgcagaggcggataagtctctcctcttaggagtgcacaaacacggg
tatgagcgatacaatgccatgcgggccgactcagagctatgcttcttggagcgggtgggc
atgcctgacgtcacggcgctctcagccgagcagagtggaggagaggtagtggctgacctc
actgacagtgcttgcaaaagtgatgatgtgaaagatgatcctgaatgcaatcaggaggag
ggaagagtggaaaaggttgataataaggatgaaaccagctccagtaatgatgcaatggac
aagcatgacagtgttggtcaagacacactctcagtggagatggtccaggagacctttggc
caggagggcatggagctaaagggtcgccctctgtggccggccggccctgcccttacggcc
aggctacgtcgcctcatcacggcctaccagcgcttcatgcggcgcgagccactgcgccac
gacttcctgctacctgaagggctgagggcaggcctggggacgatgtcctggcagctgggg
gaagagattaggcgttgcacggtggctgccgccgaacctgaccctctcttcctggagtgg
cagagaaggtgggtgatgatgtcagagcaaaggtggacacggcgtgagcaagcagatttc
taccgcaccgtgtcgtcgttcggtgtggtgtacgacccggagaagaaagcattcaactgg
agtcctttccgctcctttgcccggttggagaggaagaccgacgagagcctggagagatac
ttcagtagctttgtgtccatgtgccgcaccgcctgcagattgcccaccaggaaggacgaa
gggcctctggaccacaacctgtttgtggagcccatcacagaggagcgagcagcacgtacc
ctctaccgcatcgagctgctgcgcaaggtcagagagcaggtgctgcgccacccactgctg
ggcccgcggctgcagctgtgtcggcccagcctctacctgcctgtgtggtgggagtgtggc
aagcacgaccgcgacctcctgattggagcggcccgccacggcctcagccgcactgactac
tacatccttaacgacccgcagctatctttcctggaggcccaccgcaactacgtccagaac
gagaatcaccagggctaccaacccagtgtgcaccacgcaggcatggccccctcaccgcac
caccacccctgctgcatctatgagacaggcctcagccaatgccactctccccagccgccg
gagtacggtcaccaagccatcccctcttcgatccacttccattctcacccgaacgttcac
ggtcacccgccagagatagtgggcacgggccccggtggcagcctaggtatggtgtctggg
ccaagggagggcttcctggtttgcccccctctggatgagtcattggaactggcatcactg
cagcatgagggcctggcctcagattccctccatggtaagtctaccaaggaggccttcaat
gggttccccttcaactcagcgcagggcggccagagcatgctcaactcgtatggtgtgcag
ggggagctgaccagcgagcagtcggccgacatggacccgatcatctcaggcaagctgcgc
agcgacgtgctggtgggctcctcggaagagaatggccttatggcccccttgctggagctg
gaacaggagctgcaggtgccctgggatagcactgaccacacaggcacagcagatgtcgtg
ggcatgttcaacgaggccgaccccatcctgggggcaccagaccttgatacagagttcctg
gacacagaggagcagccaggagacgggggaagggaggacggagcagggggagtgcttgac
gactgcctaggtatagcctcatcccggagcgacccaggggagccgctgccctccagtttc
atgctgttcaagaacattgacgtgagcgaggaggagcctgctgcagagcacacaaacctc
tccgccagcccccttccttcctacaccacccctccgcacctgtcgctgtcccatatgacc
ttgcacccccaccaccacaaccagggtgatgtcgagcagtcagaagagaatttgagtgac
tctgacactgtcgcccacgtgcccagccccgacgagagggaggcagagagggatgtgtcc
tttgagtttgacaaagaggagatgtctgtggacagtcctagtctggtggggctggagcag
ggcctggacacctcatgtataccatgcgaggacactctccaagaggagccctgctatggg
atgggaatgggctctccagtggagtcatgtcaggtggctctagagaggccaggagaagag
actttagaaagggacacgcccttagggctagtggagggacaggctgaagaacccttggag
atatcgcccatggattcccaggagaaggacccagtggatggttctctggaagacttcggt
aaagacaaagcaccagaaggaccattcacagggccgttggagcagtacgacgtagatcca
gaagcggccttcgaggggccggccgaagcagagagcactttaagcgaacacacactcccc
actgttgacgctacatatactctgcccccatcctcctcagtccctaggccccagcctgag
ccaccactgtccccacgtgtggctggagtgtcacagatcaaacttgagttccctctggac
ccagagagctctgagagcaagtcagacatactggagcctgacaggactgtcctcacgccc
aaactggagcagacagaggtgctgctggaggtaaaggacaagatcaaggaggagaggccc
caaactccagtctctgtagtggacagctatgtggaggtggcacagtttgccgtccccatg
tccatgtgtgagatgcctgacagtctgcaggacgcgcgggagcccaccatcgcccagctg
ctgcaggaaaaagccctctactccttctccgagtggccaaaggatcgggtgatcatcaac
cgcctggacagcatctgtcacgccatcttgaaggggaagtggccctcctccagccagcag
tatgactcccctagctctctggcaaacacctgtgtgcctaacattgtgcaccagagggct
ggcttcatttcagccagggtacagccatcccagagccttaacttcaacatcccagcccct
cctgtaacccgccttcccaagtacaagtcaagagatgccggagaatgcagccagggaggc
tggaggttgacatccttgcctctcttacaggagaggctggtggcgccgccctatttgcct
gacctaaagcggagtaggcgtgcgtttgaatacaaggcagaggtgctcagtaagcagtgc
cacacaggggagaatatgcctgtaaccgtgtcgaacagtggtggggcgctgctgctcaac
ggctggcaggaggcggccatggacctctccaaggccggggatctgggcattgggggcgac
gcagcagccactgtaggccacatgagtcaccaggtccaccccgttgcccgaaaactgccc
gccatgagtgccatgcacggttcagtggggaaggacatggccgggatcctgcaggcaggt
ctcatccaccccgtcacaggccaaattgtcaatggcaacctgaggtgtgacgacgcaatc
atgcgccggaggagaggcagacggagaaacgtggaggcggttgatatcgggtttgtcaag
agcagaggaatgcatgtgcaggaaaaacagggcagggtagaagtcaccagccattctgca
gtgtcgtctacctcctccccacctgagcgccccccgggaacctccacccccaccctgtca
gaggtggtggccatcgacagagaggctgccaacaatggcttgatggaatggctgcgacag
aatcccaactgtagcatggaggtgcccactttcgcaccgtctcctggctcagcgattctg
cacagctttgtggagcggcccaagcagaggcggcatcgctgtaaagaccccaccaagttg
gatgtcaactccctaacaggggaggagagggtgccagtggtccacaggagcactggccgc
aggcttgggggtgctatggctccagcaatcaaggagctttcacgatggctggatgcaaat
actgagtactgcgtggcacctgactgggcagatgtagtgaaacactctggttttcttcct
gagggcaagttcacccgcatcctcactgagcccgtgtgccgcgaccaggggccccgccgc
cggggccgtcgtccccgcagcgagatgcccaagcccctcctctccgagtctcccatgggc
ccgctctgtatgaacggcggcctgatcggcagcatggacctggtcagcctccagaacctc
cgcaatgtccagggcatcccactcacaggcttgatgggattcccccatggctttgctgtg
tccgccggtgaagaatcaaagaatggtctgagcatgctgcctatgatgctccacggcgta
catggcgccccccacatgttcagcgttcaggggctgatgggtttgccgcccacctgctcc
gcttccacctcctcttccacggctgcagttaccaccactgcggcctcctcctcagcggcc
agtagcccctctcgaggccccggccaggcatcttcgagcacaggggccgagggctccggc
attcagcctggcacagagagaaagagggaggaaaagcagcagggcgcgatgggcagccac
agcattgcggccatcaccaccaccacagcgaccagcagtggcagccaccaggccttcaac
cctttcctcatcccggggatgtcccatggactgctgtaccctcacatgttcctcccgcac
gggggcgtcatggcgctgccaggcatgccgcctgcagactcctccagcagcccaaatatg
aagaagaaaagaacaagggaggaaggggtggtggtggtggacgcaggcagccacagccac
ttacagacggacagtgggcctccgaaaaaacacagtgatggccagactggggagagaacg
gctggccaggctgggccagaggacagggagcagacggaggacagcattcaggaggagggc
acgggacacgactcccatgatcctccagaggtaaaccccaagaatagcgttgaagaggag
agaggaacaatggagattagcttgatggaggaggaaaaactgcctgaggaggagagcgtg
tcaatgggggcagagtag
DBGET
integrated database retrieval system
