KEGG   Oncorhynchus gorbuscha (pink salmon): 124009242
Entry
124009242         CDS       T07892                                 
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
  KO
K14315  nucleoporin NDC1
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    124009242 (ndc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ogo03019]
    124009242 (ndc1)
Messenger RNA biogenesis [BR:ogo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     124009242 (ndc1)
SSDB
Motif
Pfam: Ndc1_Nup
Other DBs
NCBI-GeneID: 124009242
NCBI-ProteinID: XP_046176793
LinkDB
Position
LG22:50169370..50202917
AA seq 678 aa
MFSSDQSCWFVRKVICWRAVASMAWSVLLLLPTTALFVLLSRFSLFHPILWISECLSLLT
SASAIFSFILLCGVVLMVGFFNLEYYTVVPSIACSKIALLGQVLHPRQFVHSLVHCIMGV
VVAWCCAFTIGGRYRSLGHPCTQDESSSGPEMCLNEYHLVLLLVGAFIGYSHSLVGVVYN
MNYVSFHTMQQYKYLRFKGALPRVVKASTVQALCCLRTFLLLYFFMGYAPRAWICKTLDL
SINSSIHSLDSVSSLLDLSLLYHLWISGTFLLLTWYITVLLFRIFVTEVYSFPVQSTFTE
DAHQCLPKVITGTQPMILKFLALQDLALLSQHSPSRRLEVFSLSQPGGHPHIWTALSKEC
LSLLSDLTERLVAHHDTVATNGRAKSQSTGGNKRSTTSSEGSVTSVGMEDMKTPRPGALI
RTPGSVFLRSSVGSGLRTPLTIPFTPDLDSPFSSPALRRLTGPLEPQGALSPGFSSIQSP
HVMRRGPKLWSASTDSQLNGSPPPSPGPAPSPSQAQLKPSFLVTFLQNRKDQVKHFLAKR
MLIMYLFNKLPEASSQALFADSQVHIWALQGLSHLVAASFSEDQYGIVQTTLPTILSTLL
LLQEAVDRHFKLPHTSSKPGHCSCSMGDDSYKTLRFALRSTLKTSVYRITATFGGHLHAV
QMSAEHRKRLQHFLEYKE
NT seq 2037 nt   +upstreamnt  +downstreamnt
atgttttcatcggatcaaagttgttggttcgttcgtaaggtgatctgttggagagcagta
gccagtatggcgtggtctgtcctgctgctgctgcccaccacagctctgtttgtccttctc
agcagattcagcctgtttcaccccatactatggatatcagaatgcctgtccctattgacc
agtgccagtgccatcttctccttcattctgctatgtggagtggtattgatggtgggcttc
ttcaacctggagtattacacagtcgtcccatccatcgcctgttccaagatcgccctcctg
ggtcaggtgctccacccccgtcagttcgtccactcactggtgcactgcatcatgggtgtt
gtagtagcgtggtgttgtgccttcaccatcggagggcgctacaggtccttggggcacccc
tgtacacaggatgagagtagtagtggtcctgagatgtgcctgaatgaataccacctggtg
ctgctgctcgtgggggccttcattggctacagccacagcctggtgggagtggtctacaac
atgaactacgtttctttccacaccatgcagcaatacaagtacctccgcttcaagggagct
ctgccccgagtggtgaaggccagtactgttcaggctctctgctgtctcaggaccttcctc
ctgctgtatttcttcatgggatatgcaccacgagcctggatctgtaaaacacttgacctc
agcatcaacagttcaatccattccctggacagtgtgtctagtctattggacctgtccctc
ctgtaccacctgtggatcagtgggaccttcctcctcctcacctggtacatcacagtgctg
ctcttcaggatctttgttaccgaggtttacagttttcctgtccagtccacattcacagag
gacgcccaccagtgcctgcccaaagttatcactggcacgcaaccaatgatactgaagttc
ctagccctccaggacctggctctgctgtctcaacattctccttctagacgtctggaggtg
ttcagtctcagccaaccaggcggtcaccctcacatctggacggccctgagtaaggagtgt
ctgtctctgttgtctgacctgactgagcggctggtagcccaccatgacactgtagctact
aacggacgagccaagtcccagtctacagggggcaacaagcggtccaccacctcctcggaa
ggctccgtaacttctgtcggtatggaggatatgaagactcctcggcccggcgccctgatc
agaacccctggctcagtgttcttgcgttcctctgtcgggtcggggctgcgaactcccctg
accatcccctttaccccggacctagacagccccttctcctcccccgccctgcggcggctc
actggccccctggagcctcagggggccctgtcccccggcttcagctccatccagagccct
cacgtcatgaggaggggccccaaactctggtctgcttctacagactcccagctgaacggc
agtcctccgccatctcctggtcccgcccccagcccgtcccaggcccaactcaaaccctcc
ttccttgttaccttcctacagaacaggaaggaccaggttaaacatttcttggcaaagcgg
atgctgataatgtatctgtttaacaagctgccagaagcctccagtcaggccctgtttgct
gacagccaggttcacatatgggctctgcaaggtctgtctcacctggtggcagcgtccttc
tctgaggaccagtatggaatagttcagaccaccctgcctaccatcctcagcaccctactg
ctgttacaggaggctgtggatcgtcacttcaagctcccccatacctcctctaaaccaggt
cactgttcctgcagtatgggagatgacagttacaagacgctccgcttcgccctgcgatcc
accctgaagacctctgtctacaggatcacagccaccttcggaggacacctgcacgctgtc
cagatgtccgcagagcaccggaagagactgcagcacttcctggagtataaagagtga

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