Oncorhynchus gorbuscha (pink salmon): 124009242
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Entry
124009242 CDS
T07892
Symbol
ndc1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124009242 (ndc1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124009242 (ndc1)
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124009242 (ndc1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
124009242
NCBI-ProteinID:
XP_046176793
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Position
LG22:50169370..50202917
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AA seq
678 aa
AA seq
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MFSSDQSCWFVRKVICWRAVASMAWSVLLLLPTTALFVLLSRFSLFHPILWISECLSLLT
SASAIFSFILLCGVVLMVGFFNLEYYTVVPSIACSKIALLGQVLHPRQFVHSLVHCIMGV
VVAWCCAFTIGGRYRSLGHPCTQDESSSGPEMCLNEYHLVLLLVGAFIGYSHSLVGVVYN
MNYVSFHTMQQYKYLRFKGALPRVVKASTVQALCCLRTFLLLYFFMGYAPRAWICKTLDL
SINSSIHSLDSVSSLLDLSLLYHLWISGTFLLLTWYITVLLFRIFVTEVYSFPVQSTFTE
DAHQCLPKVITGTQPMILKFLALQDLALLSQHSPSRRLEVFSLSQPGGHPHIWTALSKEC
LSLLSDLTERLVAHHDTVATNGRAKSQSTGGNKRSTTSSEGSVTSVGMEDMKTPRPGALI
RTPGSVFLRSSVGSGLRTPLTIPFTPDLDSPFSSPALRRLTGPLEPQGALSPGFSSIQSP
HVMRRGPKLWSASTDSQLNGSPPPSPGPAPSPSQAQLKPSFLVTFLQNRKDQVKHFLAKR
MLIMYLFNKLPEASSQALFADSQVHIWALQGLSHLVAASFSEDQYGIVQTTLPTILSTLL
LLQEAVDRHFKLPHTSSKPGHCSCSMGDDSYKTLRFALRSTLKTSVYRITATFGGHLHAV
QMSAEHRKRLQHFLEYKE
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgttttcatcggatcaaagttgttggttcgttcgtaaggtgatctgttggagagcagta
gccagtatggcgtggtctgtcctgctgctgctgcccaccacagctctgtttgtccttctc
agcagattcagcctgtttcaccccatactatggatatcagaatgcctgtccctattgacc
agtgccagtgccatcttctccttcattctgctatgtggagtggtattgatggtgggcttc
ttcaacctggagtattacacagtcgtcccatccatcgcctgttccaagatcgccctcctg
ggtcaggtgctccacccccgtcagttcgtccactcactggtgcactgcatcatgggtgtt
gtagtagcgtggtgttgtgccttcaccatcggagggcgctacaggtccttggggcacccc
tgtacacaggatgagagtagtagtggtcctgagatgtgcctgaatgaataccacctggtg
ctgctgctcgtgggggccttcattggctacagccacagcctggtgggagtggtctacaac
atgaactacgtttctttccacaccatgcagcaatacaagtacctccgcttcaagggagct
ctgccccgagtggtgaaggccagtactgttcaggctctctgctgtctcaggaccttcctc
ctgctgtatttcttcatgggatatgcaccacgagcctggatctgtaaaacacttgacctc
agcatcaacagttcaatccattccctggacagtgtgtctagtctattggacctgtccctc
ctgtaccacctgtggatcagtgggaccttcctcctcctcacctggtacatcacagtgctg
ctcttcaggatctttgttaccgaggtttacagttttcctgtccagtccacattcacagag
gacgcccaccagtgcctgcccaaagttatcactggcacgcaaccaatgatactgaagttc
ctagccctccaggacctggctctgctgtctcaacattctccttctagacgtctggaggtg
ttcagtctcagccaaccaggcggtcaccctcacatctggacggccctgagtaaggagtgt
ctgtctctgttgtctgacctgactgagcggctggtagcccaccatgacactgtagctact
aacggacgagccaagtcccagtctacagggggcaacaagcggtccaccacctcctcggaa
ggctccgtaacttctgtcggtatggaggatatgaagactcctcggcccggcgccctgatc
agaacccctggctcagtgttcttgcgttcctctgtcgggtcggggctgcgaactcccctg
accatcccctttaccccggacctagacagccccttctcctcccccgccctgcggcggctc
actggccccctggagcctcagggggccctgtcccccggcttcagctccatccagagccct
cacgtcatgaggaggggccccaaactctggtctgcttctacagactcccagctgaacggc
agtcctccgccatctcctggtcccgcccccagcccgtcccaggcccaactcaaaccctcc
ttccttgttaccttcctacagaacaggaaggaccaggttaaacatttcttggcaaagcgg
atgctgataatgtatctgtttaacaagctgccagaagcctccagtcaggccctgtttgct
gacagccaggttcacatatgggctctgcaaggtctgtctcacctggtggcagcgtccttc
tctgaggaccagtatggaatagttcagaccaccctgcctaccatcctcagcaccctactg
ctgttacaggaggctgtggatcgtcacttcaagctcccccatacctcctctaaaccaggt
cactgttcctgcagtatgggagatgacagttacaagacgctccgcttcgccctgcgatcc
accctgaagacctctgtctacaggatcacagccaccttcggaggacacctgcacgctgtc
cagatgtccgcagagcaccggaagagactgcagcacttcctggagtataaagagtga
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