Oncorhynchus gorbuscha (pink salmon): 124009359
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Entry
124009359 CDS
T07892
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
ogo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124009359
03015 mRNA surveillance pathway
124009359
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124009359
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124009359
5.6.2.5 RNA 5'-3' helicase
124009359
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124009359
mRNA cycle factors
Common to processing body (P body) and stress granule
124009359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
UvrD_C_2
SRP54
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
124009359
NCBI-ProteinID:
XP_046177062
LinkDB
All DBs
Position
LG22:10922433..10933445
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AA seq
1105 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEDADLLGADTQGSEYEFTDFTLPSQTQTGQTQSQLDNQVNGP
DGVLQNGEDSVVKTSQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSKK
WFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKAD
SVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQI
NKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKE
SQTQDNITVRWDLGLNKKRIAYFSLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEVPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHMSGLKVVRLCAKSREAIDSPVSFLAL
HNQIRNMDSIPELQKLQQLKDETGELSSSDEKRYRALKRTAERELLTNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVILGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEASNVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
AVNPVFQGGRFMSTAMYDAREALIPGSVYDRSSTARTSNMYFQTHDQIGMIGPGPMASLN
IPIPFNLVMPPMPPPGYLGQVNGPQAGRGGGMKGKAGGGARGGRQRSRGMASHGGGNGQH
GHMSGSQASQDLGSQPFSQGPLTQGYITMSQPSQMSQPGLSQPELSQDSYLGDEFKSQID
VALSQDSTYQGERAYQHGVTGLSQY
NT seq
3318 nt
NT seq
+upstream
nt +downstream
nt
atgagtgttgatgcgtacgggccgagctcgcagactctcacgttcctggacaccgaggac
gccgacttgcttggagcagatacccagggttcggaatatgagttcacagattttacccta
ccgagccagactcaaacaggccagacgcagagtcagttggacaaccaggtgaatggacct
gatggagttctgcagaatggggaagactctgttgtaaaaacaagtcaactccttgcagag
ttgaactttgaagaagacgaggaggacacctattatactaaagacctcccagtccatgca
tgcagttactgtggtattcacgatccggcatgcgtggtgtattgcaacaccagcaagaag
tggttttgcaatggacgtggcaatacgtctggcagccacattgtgaaccacctggtcaga
gcaaagtccaaggaggtgactctgcacaaggacggtcctctgggggagacggtgctggag
tgctacaactgtggctgtcgcaacgtctttctcctggggttcatccccgccaaggccgac
tctgtggtggtactgctttgcaggcagccatgtgccagtcagagcagtctgaaagacatc
aactgggacagctcccagtggcagccgctgatccaggaccgctgcttcctctcctggctg
gtgaagatcccctcagaacaggaacagcttcgggcccgccagatcaccgcccagcagatc
aataaactggaggagctctggaaggaaaaccccacagccactctggaggaccttgagaag
cctggcgtggacgaggagcctcagcacgtgctgctgcgctatgaggatgcctaccagtac
cagaacatatttggccccctggtcaaactggaggccgactacgataagaaactcaaagag
tcccagacccaagacaatataactgtcaggtgggacttgggactcaataaaaagcggatt
gcttatttcagccttcccaagacggactcaggtgacatgcgcctgatgcagggtgatgaa
atttgcctgaggtacaagggagatcttgccccactctggaagggtattggacatgtcatc
aaagtaccagacaactatggcgacgagatagccattgagttgaggagtagtgctggggct
cccgtggaagtaccacataacttccaggttgactttgtgtggaagtccacctcttttgac
aggatgcaaagtgccctgaagacctttgccgtggacgagacctctgtgtccgggtacatc
taccacaagctgctgggtcacgaggtggaggacgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgcccagggcctgcctgacctcaaccactcacaggtgtatgctgtgaagact
gtgctgcagcgtcctctcagtctcattcaggggccccctggcacggggaaaacggtcacc
tctgccactgtagtctaccacctggccagacagggcaacgggccagtgctggtgtgcgct
cccagcaacatcgcagtggaccagctgactgagaagatccacatgtcgggcctgaaggtg
gtgaggctctgtgccaagagcagagaggccatcgactcccccgtgtccttcctggctctg
cacaaccagatccgcaacatggacagtataccagagcttcagaagctgcagcagctgaag
gacgagactggggagctgtcctcctctgatgagaagcgatacagggccctgaagcgcacc
gctgagagggaactactcacgaatgctgatgtgatctgctgtacctgtgtgggggcagga
gacccccgcctggccaagatgcagttccgctccatcctcattgatgagagcacgcaggcc
actgagcccgagtgcatggtgcctgtcatactgggggccaaacagctgattctggtggga
gaccactgccagctgggtccagtagtgatgtgtaagaaggcagccaaagcgggcctgtcc
cagtccctgtttgagcgtctggtggtgctgggcatcaggcccatccgtctgcaggtgcag
taccgtatgcacccggccctcagcgccttcccctcaaacatcttctacgagggctccctg
cagaacggagtcaccgcggctgaccgcatcaagaaaggctttgacttccagtggccacag
ccagacaagcccatgttcttctatgtgacccagggccaggaggaaatcgcaagctccgga
acgtcctatctaaacagaactgaggcttccaacgtggagaagatcaccactaggctgcta
aaggccggggccaagcctgaccagataggcatcatcaccccctacgagggccagaggtcc
tacctggtgcagtacatgcagttcagtggctctctccacaccaagctctatcaggaggtg
gagatagccagtgtcgatgccttccagggcagagagaaggacttcatcatcctgtcctgt
gtcagagccaacgagcaccagggcatcggcttcctcaacgacccacgacgtctcaacgtg
gctctcactagggccaggtatggggttatcatcgtgggcaaccccaaggccctgtccaag
cagcctctgtggaaccaccttctcaactactacaaggagcagaaggttctggtggaggga
cccctcaacaacctgagggagagcctcatgcagttcagcaagcctcgcaagctggtcaac
gccgtcaaccctgtttttcaggggggccgtttcatgagcacagccatgtatgatgccagg
gaagcccttattcctggatctgtgtatgaccgcagcagcactgcacgtacatccaacatg
tacttccagacccacgaccagattggcatgattggcccaggccccatggcctctctgaac
atccccatccccttcaacctggtcatgccccccatgccgccgccaggctacctgggccag
gtcaacggcccccaagcaggccgtggaggaggtatgaagggcaaggcgggcggaggggca
cgaggcgggcggcagagaagccgtggtatggcgagccatggcgggggcaacgggcagcac
ggccacatgagtggcagccaggccagccaggacctgggctcccagcccttctcccaggga
cccctcacacagggctacatcaccatgagccagccctcccagatgagccagcctggcctg
tcccagcctgaactctcccaggacagctaccttggcgatgagttcaagtcccagattgac
gtggccctctcccaagactccacctaccagggtgaacgagcctatcaacatggcgtgact
ggactgtcccagtactag
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integrated database retrieval system
