Oncorhynchus gorbuscha (pink salmon): 124009366
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Entry
124009366 CDS
T07892
Symbol
dhx30
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX30
KO
K13185
ATP-dependent RNA helicase DHX30 [EC:
5.6.2.6
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124009366 (dhx30)
03029 Mitochondrial biogenesis [BR:
ogo03029
]
124009366 (dhx30)
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124009366 (dhx30)
Spliceosome [BR:
ogo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124009366 (dhx30)
Mitochondrial biogenesis [BR:
ogo03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
Other mitochondrial DNA transcription and translation factors
124009366 (dhx30)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
OB_NTP_bind
DEAD
HA2_C
Dicer_dimer
AAA_22
HA2_N
AAA_19
ATPase
nSTAND3
AAA_16
Motif
Other DBs
NCBI-GeneID:
124009366
NCBI-ProteinID:
XP_046177084
LinkDB
All DBs
Position
LG22:27729528..27742236
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AA seq
1171 aa
AA seq
DB search
MALPGSVLVRLRALCNLGKSLETRNTIGHNYNRVRWYKTKAKSNQDTAASSGQTRRGSEL
LKEFPEPKSLLFTTISRSLGVSDLSQHIQYHCTEDGDLKRATVTLLWPSKMEVEGFARKK
IDAERYAAAAACHKLREMGVLGPGNQVARRSVGRGRGPPLSALQDLEECQWTDVHVPRRD
LQNGSLEPCIQSSVYRAPEENSELSQALSMFVNPKALLTRVIQVATSSNRFRELVQYKTV
GGKMKRCELTMRWPEEITFVASALRRVEAERRAAALACLKLKKMELLDEDNQPLTHAKYH
KEEMREAGQRDRQPCHLEIPEYLEHSTREYLTQYPVATEMQKLWEEEEERSQQRLNQQDE
EEEEDLVTDAITGRPYRPLSTQEAEQLSSDLQEEWERAGPGLGVELPVDAHRERVVSAVE
SSRVIVVAGETGCGKTTRIPRFLLEGRVRGGDGAECNILVTQPRRISAVSVAHRVAHEMG
PALKRSVGYQVRLESRPPEHSGGALLFLTVGVLLRKLQGNASLRGVSHVVVDEVHERDVN
TDLLLALLRPALRDNANLRVVLMSATGDNQRLAQYFGGCPVVSVPGFMHPVRDRYLEEVL
REMGRPPLPPARTDLQGREKNDATPDLDLVANVIEHIHRQGEPGAVLCFLPGWQDIKAVQ
KRLEEKPTFQSGSQMILPLHSSMSVGDQQTVFQRPPEGRRKIVLATNIAETSITIDDIVH
VVNAGSQKEQNYDTRTKVSCLDTVWISRSNVTQRRGRAGRCQPGHAYHLFPRQRLESMTT
FPVPEILRTPLESLVVQAKIHSPHCKAVDFLSQVLDSPEREAVTDAVRNLQEIGVLDKTE
ALTPLGERVACLSCDPRLGKVLVLAALFRCVLPLLSVTACLTRDPFHNSMQNRALVAKAK
EDLGGSSYSDYLVFSRAVLGWRSVQQERDRETRQDYLNRYTLSGAGLRFINGLTSQFSEN
LLEAGLVERSADCQRSSSLYNQHSHQDELVKAVLLAGLYPNLIQVKRGAVTKGRFRPNSL
SFRTQSGPVLIHRSSVNRGEEQFPSRWLTFFSAIKSNGNVFIRDSSAAHPLALLLLTDCD
ITERVNGDRVEVAFPGRSLVRCELSVQTWELLWELRSSIQTMLYRNLRPHSSANYITQDG
KLISLLVELLNNTESNTDAQPNGGHSDSEVD
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgcccggttcagtactcgtgcgactcagagcgttgtgtaaccttggaaaatct
ttggagacaaggaacacaattggacacaattacaatcgggtccggtggtacaagacaaaa
gccaagagcaatcaggacactgcagcgtcatcgggccagacaagacggggtagtgagctg
ctgaaagagttccctgaaccgaagagcctgctgtttaccaccatatcccggtcgcttggg
gtgtctgacctctcccaacacatccagtaccattgcacagaggatggggatctcaagaga
gccactgtcacactcctctggcccagcaagatggaggtggagggctttgctcgcaagaag
attgatgctgaacgatacgctgctgctgctgcctgtcacaagctgagggagatgggtgtg
ctgggtccaggcaatcaggtggccaggaggagtgtgggacgagggcgaggaccaccactg
tcagccttacaggacctggaggagtgtcagtggacagatgtccatgtgcctagaagagac
ctccagaatggatccttggaaccttgcatacaatcaagtgtatacagggcacctgaggag
aattctgagctctcccaggctctttccatgttcgtaaatccgaaagctctgctgaccagg
gtcatccaggtggccacgtcctccaacagattcagggagctggtacagtacaagacagtg
ggcggtaagatgaagagatgtgagctgaccatgcgatggccagaggagattacatttgtg
gcctcggctcttcgcagagtcgaggcagagaggagagctgctgcactggcctgtctcaaa
ctgaagaaaatggagctgctagatgaggacaaccaacctctgacccatgctaagtaccac
aaggaggagatgcgtgaggcggggcagagagacagacagccctgccatctggagataccc
gagtacttggagcatagcaccagagaatacctcacacagtatccagtggcgacagagatg
cagaagctgtgggaggaggaggaggagagaagccagcaaaggttgaaccagcaggacgaa
gaggaggaagaggacctcgtcacagacgccatcacaggcaggccataccggcccctctct
acccaggaggccgagcagctgagctccgacctacaggaggagtgggagagggcagggcct
ggcctgggggtggagctcccggtcgacgcccaccgggaacgcgttgtgtcagcggtggag
tcctccagggtcatcgtggttgctggggagacgggatgtggcaagacaacgcgtatcccg
cgcttccttctggaggggcgtgtgcggggcggggatggagcggagtgtaacatcttggtc
acccaacctcggaggattagcgctgtgtcagtggctcaccgtgttgcccacgagatgggc
cccgccctcaagcgctctgtagggtatcaggtgcgtctggagagccgtcccccggagcac
agcggtggggcccttctcttcctgacggtgggggtgttactgaggaagctgcagggtaac
gcctccctgaggggggtaagccatgtggtggtggatgaggtccacgagagggacgtcaat
acggacctgctgctggccctgctgcgacccgctctaagggacaacgccaacctccgtgtc
gtgctgatgagcgccacaggggataaccagaggctggcccagtacttcgggggctgcccc
gtggtcagtgttcccgggttcatgcaccctgtcagggatcggtacctggaggaggtcctt
agggagatggggagaccaccgctacccccggcaaggacagacctgcagggacgggagaag
aatgatgccacgccagacctggacctagtagctaatgtgatagagcacatccacagacag
ggagagccaggtgcagtgctgtgtttcctaccaggttggcaggacattaaggccgtccag
aagagattagaggagaagccaaccttccagtctggctctcaaatgatcctaccattacac
tcaagtatgtcggtgggtgaccagcagaccgtgttccagcgccctcctgagggccggagg
aagatcgtcctggccaccaacatcgctgaaacctctatcaccatcgacgacattgttcac
gtagtaaacgcgggctctcagaaggagcagaactacgacacacggaccaaggtgtcatgt
ctagacacagtctggatctcgcgctccaacgtcactcagcgtagagggagggcggggcga
tgccagcccggacatgcctaccacctgttcccacggcaacgcctggaatcaatgacgacc
ttccctgtgcctgagatcctacgcacccctctggagagcctggtggtacaggccaagatc
cacagcccccactgcaaggcagtggatttcttatcgcaggtgttggacagcccagagcga
gaggctgtgaccgatgctgttcgcaacctgcaagagattggtgttctggacaagacagag
gccctgactcccctgggggagagagtagcctgtctgtcctgtgacccgcgcctggggaag
gtgctggtgcttgctgctctgttccgctgtgtcctgcccctgctgtcagtcacagcctgt
ctcaccagagaccctttccacaacagcatgcagaacagagccctggtcgctaaggctaag
gaagacctgggaggttcaagctacagtgattacctggtgttcagtcgagccgtgttgggc
tggaggagtgttcagcaagagagggacagagagaccagacaggactacttgaacagatac
acactgtctggagccggcctgcgcttcatcaatggtctgacttcccagttcagtgagaac
ctccttgaggctgggctggtggagcgttcagctgactgccagagatcctcctccctctac
aaccaacacagccaccaggatgagctggtcaaggctgtgctgctggccggactctacccc
aacctcatacaggtgaaaaggggagcagtgaccaaaggtcgcttccgtcccaacagcctg
tccttccgtacgcagagtggcccagtgctcatacaccgctcctccgtcaacaggggagag
gagcagttcccaagtcgctggctgaccttcttcagtgcaatcaagtccaacggtaacgtc
ttcatcagagactcctcagcagcccaccccctcgccctactgctgctcaccgactgtgat
atcactgagagagtgaatggtgaccgtgtggaggtggcgttcccggggcggtcgctggta
cgctgtgagctgtctgtccagacatgggagctgctgtgggagctacgctcctccatccag
accatgctgtaccgcaacctccgcccacacagctcagccaattacatcacacaggatggc
aagctcatctcgctattggtggagctgctgaacaatactgagtccaatacagacgcccag
ccaaacggtggccacagtgactctgaggtagactga
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integrated database retrieval system
