Oncorhynchus gorbuscha (pink salmon): 124009492
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Entry
124009492 CDS
T07892
Name
(RefSeq) THO complex subunit 2-like isoform X1
KO
K12879
THO complex subunit 2
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124009492
09122 Translation
03013 Nucleocytoplasmic transport
124009492
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124009492
03041 Spliceosome [BR:
ogo03041
]
124009492
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124009492
Spliceosome [BR:
ogo03041
]
Complex C
Other components
EJC/TREX
124009492
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124009492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
124009492
NCBI-ProteinID:
XP_046177270
LinkDB
All DBs
Position
LG02:74512220..74577239
Genome browser
AA seq
1587 aa
AA seq
DB search
MCGILGKMATLILPADWIKNWEKSGKHEFVQLCKNLADKTNHDSIIKDIQAALYELCWHV
VQGNFKLDLAASVLSDMMELRDDMPSILADVFSILDIETSSLEEKNKRDHYTQLVGACLL
FVPDAILKERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLI
TELGQDLSGNITSHIVLESIKSLIGCFNLDPNRVLDIILEVYECRSDQDEFFLPLIKSYM
CEPLTLCHILGFKFKFNQEPNEETPTSLYHIAAALLHHKLIELEDLYVHLMPLDASIVEE
HKREITEAKQIARKLTMVVVPSEKMEDKEREKEKEEEKSDKPPDNQKLGLLEALLRIGDW
HHAQSIMDQMPAFYATSHKAIALALCQLLHLTVEPLYRRAGVPKGAKGCVMRPLRNKRAP
RPAESFEDLRRDVFSMLCYLGPHLSHDPILFAKIVRLGKGFMKEYQNEARNDHIKDRMDT
LLSCFLSIADQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLL
VKVKAQTVDRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLIGPVV
DSLKYLTSLNYDVMAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELA
GLLQYVTNTLKAGKSFDLLILKEVVQKMAGIEITDEMTSEQMEAMTGGEQLKAEGGYFGQ
IRNTKKSSQRLKDALLDHDLALPLCLLMAQQRNGVVFLEGGEKHLKLVGKLYDQCHDTLV
QFGGFLASNLSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYGHQILSKYDELKKAEK
SNRQQQKVHKYVAACELVMSPVHEAVVSLHPPRVWDDLRPQFYATFWSLTMYDLAVPHNA
YDREVKKLQVQVKTIEENPDVPMNKKKKEKERCTALQDKLQEEEKKQLEHVQRVLHRLKL
EKDNWLLAKSTKNETITKFLQLCLFPRCIFSAIDAVYCARFVELVHQQKTPNFCTLLCYD
RVFSDIIYTVASCTENESRRYGRFLCCMLETVTRWHSDRAVYEKECGNYPGFLTIFRATG
FDGGNKADQLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPCYPKVL
NLGQALECRVHKICLEEKEKRPDLYALAMGYSGQLKGRKVHMVPENEFHHKEQPVRSATT
ASQLNGPGTTAKPATNASKMEEGACEDADRSKDKSQGTAKPVNKANSTVAKMTTSNGNGA
PNSTKAIKERDDKEKSGKEKKEKKEKTPGSTPETKGESRREKQRDERGAAGKEERAPREG
KEKTPKADRDKQKAEEKSNKEDNKAKAGNGEPKELSRERDTGAKESKTKEKGGDQSKEKG
GDRSAVSGSLKSPVPRSESAESERDHKRRKVDTHSSPSHSSSVKDNSNEPKDSASKHHIT
YNSVSRSKSRERETDQKESENTRGRSKEKKTEDKDRKDRKRDHVTTDREMSLESKRRKDE
NGTNSSNKHSKSASPSSDSPVSADKEKTKRSKSSSKEKGESTKLERNSSGGKKESRHDKD
KPDKKEKRDSSGGKEEKKHHKSSDKHR
NT seq
4764 nt
NT seq
+upstream
nt +downstream
nt
atgtgtggtattttggggaagatggcgacacttatcctgcctgctgattggatcaaaaac
tgggaaaaatctggaaaacacgagtttgtacaactatgtaagaatcttgcagacaaaacc
aatcatgacagcataataaaagatatacaggctgctttgtatgaactctgctggcatgtc
gtacaagggaacttcaagctggacctcgctgctagcgtcctcagtgacatgatggaactg
cgcgatgacatgccatccattttagcagatgttttcagtatactggacatagagaccagt
tctttggaggaaaaaaacaaacgcgaccattacacccagctagtgggagcatgtctgtta
tttgtgccagatgccatcctgaaggagagactggacccagagaccctggagtccctagga
ctcataaagcaagcccatcagttcaaccagaaaatcgtcaaaatcaagaccaagctattt
tacaagcagcagaagttcaacttgctaagggaagagaatgagggctatgccaagctgatc
actgagctgggccaagacctctcaggcaacatcactagccacatcgtcctagagagcatc
aagtccctgataggatgcttcaacctggaccccaaccgtgttctggacatcatcctggag
gtgtacgagtgtcgctctgaccaggatgagttcttcctgcccctcatcaagtcctacatg
tgtgaacccctcaccctctgccacatcctgggcttcaagttcaagttcaaccaggagcct
aatgaagagacccctacttcactctaccacattgctgccgccctcctccaccacaaactc
atagagctggaggacctctatgtgcatctgatgccactggatgccagcattgtagaggag
cacaagagagagatcacggaggccaagcagatcgcccgcaagctcaccatggtagtggta
ccctccgagaagatggaggacaaggagagagagaaggagaaagaggaggagaagagcgac
aagcctcctgataaccagaagctgggcctgttggaagcgctgctgaggatcggagactgg
caccatgcccagagcattatggaccagatgcctgccttctacgccacctctcacaaggcc
atcgccctggcactgtgccagctgctgcacctgactgtggagccgctgtaccgcagagcc
ggggttcccaaaggggccaagggctgtgtgatgaggcccctgaggaacaagcgagcccca
aggcctgccgagagctttgaggacttacgcagagacgtgttcagcatgctatgctacctg
gggcctcacctctcccatgaccccatcctctttgccaagatagtacgactgggcaagggc
ttcatgaaagagtaccaaaatgaggctagaaatgaccacatcaaggacagaatggacacg
ttgctgagttgtttcctgagcattgcagaccaggtgcttctgccctcgctctctctaatg
gagtgtaacgcctgcatgtcagaagaactctggggcctcttcaaactgttcccttaccag
cacaggtaccggctatacggtcagtggaagaacgagacgtacaccagccacccactgctg
gtcaaggtcaaagctcagactgtggacagagctaaatacatcatgaagcgattgaccaaa
gagaatgtgaaaccatctgggcggcagataggcaagctgagccatagcaaccccaccatc
ctctttgactatatcctgtctcagatccagtggtatgacaacctcatcggtccagtggta
gactccctcaagtacctcacctcactcaactatgatgtcatggcctattgcattattgaa
gcgctggccaatccagagaaagagaagatgaaacatgacgacactacgatatcctcctgg
cttcagagcctggctagtctgtgtggagctgttttcaggaaatacccaatcgagttggcc
ggcctcctccagtatgtgaccaatacgctgaaagcagggaagagttttgacctgctgatt
ctaaaagaggtggtgcagaagatggccggcatcgagatcacggatgagatgacatcagag
cagatggaggctatgactggaggggagcagctcaaagctgagggtggttactttggtcag
atccgcaacactaagaagtcgtcccagcgtctaaaggatgccctgttggaccatgatctg
gctctgcccctctgtctcctcatggcccagcaacgcaacggagtggtctttctagagggg
ggcgagaaacacctcaaactggtgggaaagctctacgaccagtgtcacgacaccctggtc
cagtttggtggcttcctggcgtccaacctgagtactgaggactacatcaagcgtgttccc
tccattgacatcctgtgcaaccagtttcacaccccccacgacgctgccttcttcctctca
cgcccaatgtacggacatcagatcctgtctaagtatgatgagctgaagaaagctgagaag
agcaaccggcagcagcagaaggtccataagtacgtggctgcgtgcgagctggtgatgtcg
ccggtgcatgaggctgtggtgtccctgcacccgccccgcgtctgggacgacctccgaccc
caattctacgccaccttctggtcgctgaccatgtacgacctggctgtgccacacaacgcc
tacgaccgcgaggtgaagaagctccaggtccaggtcaagaccatcgaggagaaccctgat
gtgcccatgaacaagaagaagaaggagaaggagcgatgcacggccctacaggacaagctg
caggaggaggagaagaagcagctggagcacgtccagagggtcctgcaccgcctcaaactg
gagaaagacaactggctcctcgccaaatcaaccaagaatgagaccatcactaagttcctg
cagctgtgtctgttccctcgctgtatcttctctgccatcgacgctgtgtactgcgcccgc
tttgtggagctggtgcaccagcagaagacccccaacttctgcaccctgctctgctatgac
cgggtgttctctgacatcatctacacggtggccagctgcacagagaacgagtcgcggcgc
tacggacgtttcctgtgctgcatgctggagactgtgacccgctggcacagcgaccgtgct
gtctacgagaaggagtgtggtaactacccaggcttcctgaccatcttcagagccacaggc
ttcgacggagggaacaaagccgaccagctggactatgagaacttcagacacgtggtgcac
aaatggcactacaagctgactaaagcatcagtccactgcttggagactggggagtacacc
cacatccggaacatcctcatcgtgctgaccaagatcctgccttgttaccccaaagtgctg
aacctgggccaggcgctggagtgccgcgtccacaagatctgtctggaggagaaggagaag
aggccagacctctatgccttggctatgggctattctggccagttgaaaggcaggaaagtg
cacatggtccctgagaatgagttccaccacaaggagcagccggtgcgtagcgccaccact
gccagccagctgaacggccctggcaccacagccaagcctgccaccaacgccagcaagatg
gaggagggagcctgcgaggacgctgaccgatccaaggataaatctcaggggacggcaaag
ccagtgaacaaagccaacagcacagtggccaaaatgaccaccagcaatgggaatggtgct
cctaacagcaccaaagccatcaaagagagggatgacaaagaaaagagtgggaaggagaaa
aaagagaagaaggagaagactccaggcagcactccagagacaaagggggagagccggcgg
gagaagcagagggacgagagaggagcagccggcaaggaggagcgggcgccacgagagggt
aaggagaagacgcccaaggcagaccgggacaagcagaaggcggaggagaagagcaacaaa
gaggacaacaaggccaaagccggcaacggagagcccaaggagctgtccagggagcgcgac
actggagccaaggagtccaagactaaggagaagggaggagaccagagtaaggagaaggga
ggagacaggagtgctgtgtccgggtccctcaagtctccagttccccgatctgaatctgct
gaatctgagagggatcacaaaaggcgaaaagtcgatacccactcttcaccatcccactct
tcctctgttaaggacaatagcaacgaacccaaggactctgcatccaagcaccacatcacc
tacaattcggtctcgcggtccaagagcagagagagggagacggaccagaaagagtcagag
aatacccggggccgttccaaagagaagaagaccgaagacaaggaccgaaaggacaggaag
agagaccatgtgaccactgaccgtgagatgagcctagaatccaaacgcagaaaagatgaa
aatggaacaaattcctccaacaaacacagcaagagcgccagtccctcctcagactccccg
gtctcggctgacaaagagaagaccaagaggtccaagtcctccagcaaggaaaagggagag
tctactaaacttgagagaaactcttccgggggcaagaaggagtctaggcatgacaaagac
aaacctgacaagaaggagaagagggacagcagcggcggaaaggaagagaaaaaacatcat
aagtcctccgacaagcacagataa
DBGET
integrated database retrieval system
