Oncorhynchus gorbuscha (pink salmon): 124009499
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Entry
124009499 CDS
T07892
Name
(RefSeq) coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124009499
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ogo04147
]
124009499
Membrane trafficking [BR:
ogo04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
124009499
Exosome [BR:
ogo04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
124009499
Exosomal proteins of bladder cancer cells
124009499
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_Gbeta
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ANAPC4_WD40
WD40_RFWD3
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
Beta-prop_SCAP
Beta-prop_WDR41
Beta-prop_Aladin
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
124009499
NCBI-ProteinID:
XP_046177281
LinkDB
All DBs
Position
LG22:complement(32313599..32331318)
Genome browser
AA seq
1223 aa
AA seq
DB search
MLTKFETKSARVKGLSFHPKRPWILASLHNGVIQLWDYRMCTLIDKFDEHDGPVRGIDFH
KQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTFFHHEYPWILSASDDQTIRIW
NWQSRTCVCVLTGHNHYVMCAQFHPSEDLVVSASLDQTVRVWDISGLRKKNLSPGAVETD
VRGISGVDLFGASDAVVKHVLEGHDRGVNWAAFHPTMPLIVSGADDRQVKIWRMNESKAW
ELDTCRGHYNNVSCAVFHPRQELILSNSEDKSIRVWDMSKRTGVQTFRRDHDRFWVLGAH
PNLNLFAAGHDSGMLVFKLERERPAYAVYGNMLYYVKDRFLRQLDFNSSKDTAVMQLRSG
SKFPVFSMSYNPAENAVLLCTRATNLENSTYDLYAIPKESDSQNPDAPEGKRSSGLTAVW
VARNRFAVLDRMHSLLIKNLKNEIVKKVQVPSCEEIFYAGTGSLLLRDADGVTLFDVQQK
RSLATVKIAKVKYVVWSADTSHVALLAKHAIMICNRKLESLCNIHENIRVKSGAWDESGV
FIYTTSNHIKYALTSGDHGIIRTLDLPIYVTRVRGNSVYCLDRECRPRVLTIDPTEYRFK
LALVNRKYEEVLHMVRNAKLVGQSIISYLQKKGYPEVALHFVKDEKTRFTLALECGNIEV
ALEAAKALDERGCWERLGEAALLQGHHQVVEMCYQRTKNFDKLTFLYLITGNLAKLRKMM
KIAEIRKDMSGHYQGALYLGDVSERVRILKNCGQKSLAYLTAATHGMDEEAESLKETFDL
EKETVPEVDLTAQLLQPPPPINPLDTNWPLLTVSKGFFEGAIAAKGKAGQMAADMDVDAP
GGEGWGEDAELQLDEDGFMDAQDGLGEEGGAAKEEGGGWEVEEDLDLPPELELSAGSGGG
AEDGFFVPPTKGMSPTQLWCNNSQLPVDHVLAGSFETAMRLLHDQVGVVQFGPYKQLFMQ
TLSRGRTCYLGLPSLPCLRGNPQRNWKDCGTKQGLPAVGLRLSDLIARLQQCYQLTTAGR
FEEAVERFRAILLSVPLLVVDNKQEIAEAQQLITICREYIVGLTMETERKKLPKDTLDQQ
KRLCEMAAYFTHCSLQPVHMVLVLRTALNLFFKLKNFKTAASFARRLLELGPKPEVAQQT
RKILAACEKTLTDAHQLNYDPHNPFDLCAASYTPLYRGRPVEKCPLSGACYCPPYKGQVC
RVTQVTEIGKDVIGLRVSPLQFR
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaaattcgagacgaagtcggcccgtgtgaaagggctgagtttccacccaaaa
cggccctggatccttgctagtcttcacaatggagtcatccagttgtgggactatcggatg
tgcacactgattgacaagttcgatgagcatgatggacctgtcagaggaattgatttccac
aagcaacagcctctgtttgtgtctggaggagatgactacaaaatcaaggtgtggaactac
aagctgcggcgttgcctcttcactcttcttgggcacctggactacatccgcaccaccttc
ttccatcatgagtatccatggattttgagtgcctcagatgaccagacaatacgtatctgg
aactggcagtccaggacctgtgtctgtgtactgacagggcataatcactatgtgatgtgt
gctcagttccacccctctgaggacctagtggtgtcggccagcctggaccagaccgtgcgt
gtgtgggatatctccggtctgaggaagaagaacctctctcccggggccgtagaaactgat
gtgcgaggcatctctggtgtcgatctgttcggagcatccgatgccgttgtcaaacacgtg
ctcgagggtcacgatcgtggggtcaactgggccgccttccatcccaccatgcccctcatc
gtctcaggggctgacgaccggcaggtcaagatctggaggatgaacgagtccaaggcgtgg
gaactggacacctgcaggggccactacaacaacgtgtcctgtgctgtcttccacccccgc
caggagctcatcctgtccaactctgaggacaagagtatccgtgtgtgggacatgtccaaa
aggaccggtgtccagaccttccgcagggaccacgaccgcttctgggtgctgggggctcac
cccaacctcaatctatttgctgctggtcatgacagtggtatgctggtgtttaagctggag
cgtgagcgtccggcctatgctgtgtacggcaacatgctctactatgtcaaggaccgcttc
ctgcgccagctcgactttaacagcagcaaggacaccgctgtcatgcagctgcgcagtggg
tcaaagttccccgtgttcagcatgtcttacaaccccgcagagaatgctgtcttgctctgc
actagggcaaccaacctggagaacagcacctatgacctgtatgccattcccaaagagagc
gactctcagaacccagatgctcctgaggggaagaggtcttccggtctgactgcagtctgg
gtcgcaaggaacaggtttgctgttctggaccgcatgcattctctgctaatcaagaacctg
aagaatgagattgtgaagaaggtgcaggtgcccagctgtgaggagatcttttacgccggg
acaggctccctgctgctgcgcgacgcagatggggtaaccctcttcgacgtgcagcagaaa
cgctcgctggccaccgtgaagatcgccaaggtcaagtatgtggtgtggagtgctgacacc
agccacgtggccctgctggctaaacacgcaattatgatctgcaacaggaagctggagagt
ctgtgcaacatccatgagaacatccgtgtgaagagtggagcctgggacgagagtggcgtc
ttcatttacaccacatctaaccacattaaatacgccctcacctcaggtgatcatggtatc
atccggactctggacctgcccatctacgtgacccgggtcagaggcaacagcgtctactgt
cttgaccgtgagtgcaggccccgtgtgctgaccatcgaccccacggagtaccgcttcaaa
ctggccctggtcaaccgcaaatatgaagaggttctgcacatggtgcgtaacgccaagctg
gttggccagtccatcatctcctacctgcagaagaagggttaccctgaggtagccctgcac
tttgtcaaggatgagaagacccgcttcactctagctctggagtgtggcaacattgaagtg
gcgttggaggctgccaaggctctggatgagaggggctgctgggagcggctgggcgaggct
gcgctgctgcagggtcatcaccaggtcgtggagatgtgctatcagaggaccaagaacttt
gacaagctcaccttcctctacctcatcactggtaacctggccaagctccgcaagatgatg
aagatcgctgagatcaggaaggacatgagtggacactaccagggtgctctgtatctgggg
gacgtcagcgagagagttcgcatactgaagaactgtggccagaagtcactggcatatctg
actgctgctacccacgggatggacgaagaggcagaatccctgaaagagacatttgacctg
gagaaggagactgtccctgaggtggacctcactgcccagctgctgcagccaccaccacct
atcaaccccctggataccaactggcccctgcttactgtgtccaagggcttctttgaggga
gccattgcagccaaagggaaggctggtcagatggctgcagacatggatgttgatgcccca
ggaggagagggctggggagaggatgcagagcttcagctggatgaggatggcttcatggat
gcccaggatggattaggagaggaaggaggtgcagcgaaggaggaaggaggaggttgggag
gtggaggaagatctggaccttcctccagagctggagttgtcagctggctctggaggaggg
gctgaagatggtttctttgtcccgcccactaagggcatgagccccacacagctgtggtgc
aacaactcccagctccctgtggaccacgtcctggcaggctcatttgagaccgccatgagg
ttgctccatgaccaggttggggtggtgcagtttgggccctataagcagctgttcatgcag
actctgtcccgcgggcggacctgctacctgggcctgccttctctaccctgcctgcgtggc
aacccccagaggaactggaaggactgtgggaccaagcaagggctgcctgccgtgggtctt
cgtctttctgacctcatcgcccgcctgcagcagtgctaccagctcaccactgccggccgc
tttgaggaggccgttgaacgcttccgcgccatcctgctgtctgtgccactgctggtggtc
gacaacaagcaggagatcgcagaggctcagcagctgatcacaatctgcagagaatacatt
gttggcctcaccatggaaacagaaaggaagaagttgcctaaagacacattggaccagcag
aagaggctgtgtgagatggcagcttacttcacccactgcagtctccagccagtccacatg
gtcctggtattacgtacggcactaaatctgttcttcaaactgaagaacttcaagacagct
gccagttttgcccgtcgcttgcttgaattagggcccaaaccagaggtggcacagcagaca
cgcaagatcttggcagcatgcgagaagactctgacagatgctcaccagctgaactacgac
ccccacaatccatttgacctgtgcgctgcctcctacacgcccctataccgtggacgcccc
gtggagaagtgccctctgtctggggcctgctactgccccccttacaaaggccaggtctgc
agggtcacacaggtgacggagatcggaaaagatgtgattggtctgcgtgtcagtcccctg
cagttccgttag
DBGET
integrated database retrieval system