Oncorhynchus gorbuscha (pink salmon): 124010102
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Entry
124010102 CDS
T07892
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96-like isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124010102
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124010102
03036 Chromosome and associated proteins [BR:
ogo03036
]
124010102
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
124010102
Chromosome and associated proteins [BR:
ogo03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
124010102
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
124010102
NCBI-ProteinID:
XP_046178410
LinkDB
All DBs
Position
LG02:complement(76542969..76570550)
Genome browser
AA seq
1806 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGTSSTFGQQNTSFGAATGGFGASAFGATNNTGGLFGATQNKPV
VTANPQQIHTGAGRGGGLFGSSTFSQPVTSSTSSGFGFGAPSGTSTSLFGSTSTGGGGGL
FSQQSNAFGAAKPAAFGTFGTSTASSGGLFGATNSNPFGGASTSLFGPSGFTQQAAQPGT
TVKFNPPTGSDTMVKGGVTTSINTKHQCITAMKEYENKSLEELRFEDYQAGRKGSTNPMA
APTGGLFGPAAAATPATGTTGLFGSSATNTGFSFGQAKTSFGTSAGGFGAATGSLFGQQQ
PQQAVSLFKPFGQATTTPNTGFSFGSTMGQPQQTSTMGGLFGATAASQAGGLFGNTAQTA
PATGFGTGTGLFGQTNTAFGNVGTQGLFGNKTAGFGVTTTSAPSFGTGTGLFGNKPALSL
GTATNTSNFGFGPTAAGGSLFGNKTAAGGLGTGLGASFGAVGTGQMSLFGNNKTLGSTLG
TMGGFGVQGFSTGNSTLGFGAPQQPVALTDPNAVAAQQAVLQQQINALAYSPFGDSPLFR
NPLSDPKKKEERLKPTNPVAQKALTTPTHYKLTPRPATRVRPKALTSSGSSKSQLFDGLD
DDEPSLTNGAFMPRKSIKKLVLKNLNGSSLYSSPINRDSDDLSSPPEYPLNGLGASVDED
DDVREVVEGGAENDLEIKFYAKPNLQDTISELNAHRMGAGGRNGLEVSSEDISLEDDSIQ
EERVEGPPHPAGIVLGRVGYYTIPAMDELAKMVDENGVCVVENFTVGRKGYGSVFFHGEV
NVTGLNLDEIVHFRRKEVIVYLDDKNKPAEGEGLNRRAEVTLDGVWPNDKTTCTQIKSPE
RLSEMNYEGRLENASRKQGARFLEYRSETGSWVFEVAHFSKYGLQDSDEDEEVPLKLDPK
KLKTATRLPPGQLPPSQQQVAPQAQSTAVLEPLNRMSEVDSYMADITQDAPGESMLGEEE
GESGKGEKGSRLGNVTPSEHDSVSASSQIASSLGINPHTLQIMKASLFAEADYGDMFQEQ
GGITSSLGVASPRIHLPGTQGRPSIGGLLQTRFSGAGLFQHPDVLSGGGLPGRLSMSRVS
PAVPEPSRVSPWPSFLLLAPPAEATVRTVGARRLGGPVDPENSVTLGKGRLLMDAALFTG
RSFRVGWGPGWTLVHCGDGLSGAGDKEQDHGDTGAAGFGFLPKPAKSRLLSDSPFKVVIE
QVVGLEPRNSEESQAVYQRPLEISLKHSSISTEGTCPFIQPQSGVAALHEYAEWITDLNQ
EAGAGDAVLGHWAQVWTLCEALWGRRCSAGPGTSGYLQQMERRRSFSAWLSHSATQRIEQ
EVGLNQGGGNVEAIFSYLTGHRISDACRLAQKSGDHRLSLLLSQAVGSQYGRELLALQLG
DWNRMQTDSFLLEERLRIFALLAGKPVWQSTDCVVNVCSELDWKRCMAVHLWYMLPPTAS
IAEALVKYEAAFRGSAEGQKYACAPLPPYLDQSDQPDMEEEESKRPLYDICFHLLKLYSD
RHYSLQQLLDPLAVTWDRLDYRLSWHMWSVLQALHYTHLSPARQDLIHTSYAAQLESAGL
WDMAIYVLLHIPDNTLRERAVREMLRLHCPLLETEESAKKEHFLTERLLIPEQWLHQAKA
TRARRDTDRHGEALHLYRAGHWNLCHSLVMQHLASDCIINDNHEYLLKFLEGLAVPECSA
VIQDWDTAGRVYLDYIRVVQTLHAIQQMDSTGYELECLHTEVRSLCSRIELLPCSTAKDR
LAQSEMAKRVANILRVVLSLQQGGEGGEIPLSQLASNIGRLPMPEDYALEEVRSLTQSYL
RQLIVS
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtcgtttggtgctccctttgggggagggactggaggatttgggacgtca
tccacatttgggcaacaaaacactagctttggggcggcaacaggtggctttggagcctca
gcgtttggggcgaccaacaacactggaggactctttggggcaacgcagaataaaccagtg
gtgacagccaatcctcagcaaatccacactggtgcaggtagaggaggtggcctatttggt
tccagtaccttcagccagcctgtgacatcatccaccagtagcggctttggctttggcgcg
cccagcggcacctccaccagcctgttcggcagcaccagcacgggcggcggcggaggactc
ttctcccagcagagcaatgccttcggcgccgccaaaccagccgcttttggcacgttcggt
acgagcacggccagcagtggggggctgtttggggcaaccaactccaaccctttcggaggg
gcgtctacctccctgttcggaccatctgggtttacccagcaggctgcccagccaggcacc
accgtcaagttcaaccctccaacaggaagtgataccatggtgaaagggggtgtgacgaca
agcatcaacaccaagcaccagtgcatcacggccatgaaggagtatgagaacaaatcactg
gaggagctgaggtttgaggactaccaggcagggaggaagggatccactaaccctatggct
gcaccaacagggggtctctttgggcctgcagccgcagccaccccagctacggggactaca
gggctgtttggctcctcagccactaacacaggcttctccttcggccaggccaaaacctcc
ttcggaactagtgcgggtgggtttggtgcagccacaggcagtctgtttgggcagcagcag
ccccagcaggcagtcagcctgttcaagcccttcggccaggccacgaccacccccaacaca
ggcttctccttcggcagcaccatgggccagccccaacaaaccagcaccatggggggtctg
tttggggccacggcagcgtcccaggcaggggggttgtttggaaacactgctcagaccgca
ccagctacgggctttgggacaggcaccggactctttggacaaaccaacactgctttcggc
aacgtcggcacacagggcttgtttggtaataaaacggcagggtttggtgtcaccaccacc
agcgccccgtcatttggcacgggcaccggccttttcggcaacaaacctgccctctctctc
ggaacagctaccaacacatccaactttggttttggacccactgctgctggtggaagcctt
tttgggaacaagactgcagcaggaggactagggaccgggctgggagccagctttggagca
gttggcactggtcagatgtctctgtttgggaataacaagacgctgggttccactctggga
acaatgggaggttttggagtgcagggattcagcacaggaaacagcactctgggcttcgga
gcgccacaacagcccgttgcgttgacggaccctaacgcggtggcggcccagcaggcagtg
ctgcagcagcagatcaatgctttggcctactcccccttcggagactcccccctcttcaga
aaccccctctctgatcccaagaagaaggaggagcgtctgaagcccaccaatccggtggcc
cagaaggcgttgaccacaccaacccactacaaactgacaccgcgacctgcgacacgtgtg
aggcccaaagctctgacatcatcgggctcctccaagtcccagctgtttgatgggttggat
gacgatgagccttccctcaccaacggtgccttcatgcccaggaagagcatcaagaagctg
gtgctgaagaacctgaatggcagcagcctgtacagcagcccaatcaacagagactccgac
gacctgtcttctccaccagagtaccccctcaacggactcggtgccagtgtggatgaggat
gatgatgtgagggaggtggtggagggaggagctgagaatgacctggagatcaagttctac
gccaagcccaacctacaggacacaatctcagagctcaatgcccataggatgggggctggg
ggcaggaacgggcttgaggtgagcagcgaggacatatcgctggaagatgactccatacag
gaggagcgagtggagggccccccccaccctgcaggtatcgttctgggccgtgtgggctac
tacaccatccctgccatggacgagctggccaaaatggtggacgaaaacggggtgtgtgtg
gtggaaaacttcaccgtgggcagaaaaggttacggctctgtgttcttccatggtgaagtg
aacgtgactgggctgaacctggatgagattgtccacttcaggcgtaaagaggtcatcgtc
taccttgacgacaagaacaagcccgctgagggggaggggctcaacaggcgagcagaggtg
actctggatggggtgtggcctaatgataagaccacctgtactcaaataaagagccctgag
cgtctgtctgagatgaactacgagggccgtctggagaatgcctcacgcaaacagggcgcc
cgcttcctcgagtaccgctcggagacggggtcctgggtgtttgaggtggcccatttctct
aagtacggcctacaggactctgacgaggatgaggaagtccctctcaaattggaccccaag
aagctgaagactgcaacaagacttccaccagggcagctgcctccctcccagcagcaggtg
gcaccacaggctcagtccacagcagtgctggagccgctgaatcgcatgtctgaggtggac
agttatatggccgacattacccaggatgccccaggggagagcatgttgggggaggaggaa
ggggagagtggcaagggggagaagggaagtcggctggggaatgtgaccccttcggaacac
gactctgtctcagcgtccagtcagatcgcctcctcgctggggatcaaccctcacacacta
cagattatgaaggcatccctgtttgctgaggccgattatggtgacatgttccaggagcag
ggagggattacaagttctctaggtgtggcctctcctcgcatccacctgcctggcacgcag
ggcaggccctccatcggtggtctcctgcagactcgtttcagcggtgccggtctctttcag
caccctgacgtgctctccggtgggggccttcccggcaggctgtccatgtctcgggtgtcg
ccggcggtgcctgagccttcgcgggtctccccctggccctcttttcttttgctagcccca
ccagccgaggccactgtacggacagtaggggctcggcgcctggggggacctgtggaccca
gagaactcagtcacactggggaagggccgtcttctgatggatgcggctttgttcacgggc
cggtcatttcgggtgggctggggtcctggctggactctggtccactgtggagacgggcta
agtggggccggggacaaggagcaggaccacggagacacaggagctgcaggctttggattc
ctgcccaaacctgccaagagtagactactgtcagacagtccattcaaggtggtgattgag
caggtggttggtctggagccgcggaacagtgaggagagccaagcggtgtaccagcggccc
ctggagatcagcctgaagcacagcagcatcagtacagaggggacctgccccttcatccaa
ccccagagtggtgtggccgccctgcacgagtacgcagagtggattactgacctcaaccag
gaggctggtgctggagatgcagtcctgggtcattgggctcaggtgtggactctgtgtgag
gccctgtggggccgacggtgttcggcagggcctggtaccagtggctacctgcagcagatg
gagaggagaaggagcttctcagcctggctgtcccacagtgccacccagaggatcgagcag
gaagtgggcctgaaccaggggggaggaaacgtggaggccatctttagctacctgactgga
caccggatcagtgacgcctgcaggctggctcagaagagtggggaccaccgtctctccctg
ctgctgtcccaggcggtgggctctcagtacggccgggagctgctggcactgcagcttgga
gactggaacaggatgcagacagactctttcctgctggaggagaggctacggatctttgcc
cttctcgctgggaaacctgtgtggcagtctacagactgtgtggtgaatgtgtgttcagaa
ctggactggaagcgttgtatggcggtccacctgtggtacatgctgcctcccaccgcctcc
attgctgaagccctggtgaagtacgaggctgccttccggggctctgctgagggtcagaag
tatgcctgcgccccccttcccccctacctcgaccaatcagaccagccggacatggaggag
gaagagtctaaacggccgctttacgatatctgcttccacctgctcaaactctacagcgac
aggcactacagcctgcagcagttgttggaccccctggcggtgacatgggatcgtcttgac
taccgtctgagctggcacatgtggtcggtcctgcaggcgctgcactacacacacctcagc
ccggcccgacaggacctcatacacaccagctatgctgcccaactggagagtgctggcctc
tgggacatggccatctacgtactgctgcacatacctgacaacacgctgcgtgagcgggcg
gtgagggagatgctgcggctgcactgccccctgctggagactgaggagtctgccaagaaa
gagcactttctcacagagagactcctgatcccagaacagtggctccaccaggccaaagct
accagagccagaagagacacagacagacacggagaggcccttcacctgtacagagcaggt
cactggaacctctgccacagtctggtcatgcagcaccttgcctcagattgcatcattaat
gataatcatgagtacctcttgaagttcctggaggggcttgcagttcctgagtgcagtgct
gtgatccaggactgggacacggcgggcagagtctacctggactacatcagagttgtacag
accctacacgccatacaacagatggacagtactggttatgagctggagtgtctacacact
gaggtgaggtcactctgcagcaggatagagctcctcccttgctccaccgccaaggaccgc
ctcgcccaatcagagatggccaagcgtgtggctaacatcctgcgtgtggtgttgagtctg
cagcagggtggtgagggtggcgagatacccttgtcccagcttgcgtccaacatcggccgt
ctgcccatgcccgaggactatgctctcgaggaggtccgcagtctcacccaatcatatctg
agacagctcattgtcagctaa
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