Oncorhynchus gorbuscha (pink salmon): 124010823
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Entry
124010823 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03020
RNA polymerase
ogo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124010823
09124 Replication and repair
03420 Nucleotide excision repair
124010823
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124010823
03400 DNA repair and recombination proteins [BR:
ogo03400
]
124010823
Enzymes [BR:
ogo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124010823
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124010823
DNA repair and recombination proteins [BR:
ogo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124010823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
124010823
NCBI-ProteinID:
XP_046179489
LinkDB
All DBs
Position
LG23:complement(38254999..38269684)
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AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDEDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHTSGEVEDPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEDQLQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSSIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYSHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIAAYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPSRETCSGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKITSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRMPYACKLLFQELMSMSIAPRMMTS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagatgaagatatccaatacgatgaggatgaggatgaaatcacccccgat
ttatggcaggaagcttgctggattgttatcagttcctattttgatgagaagggcctggtg
cgacagcagctggactcctttgacgagttcatccagatgtctgtgcagaggatcgtggag
gatgccccacccattgacctgcaggctgaggcccagcacacctctggtgaggtggaggat
ccgccacgctacttgctgaagtttgagcagatctacctttcaaaacccactcattgggaa
agagatggagccccgtcgcctatgatgcccaacgaggccagactcaggaaccttacgtac
tctgctccactgtacgtggatatcaccaagaccatcatcaaggagggtgaggaccagctg
cagacccagcaccagaagaccttcatcggcaagatcccgatcatgctgcgctccacctac
tgcctgctcagcggcctgacagaccgtgatctgtgtgagctcaacgagtgcccactggac
ccggggggctacttcatcatcaatgggtcagagaaggtcctgatcgcccaggagaagatg
gccacgaacacagtgtacgtcttcgccaagaaggactcaaagtatgcgtacacaggggag
tgccgctcctgcctggaaaactcctcgcgccccaccagctccatctgggtcagcatgatg
gccaggggaggacagggggtgaagaaaagtgccattggtcagaggatcgtgtccactctg
ccctacatcagacaggaagtgcccatcatcatagtgttccgagccctgggctttgtgtcc
gacagagacatcctggagcacatcatctacgactttgacgaccctgagatgatggagatg
gtcaaaccatccctggacgaggcctttgtgatccaggagcagaacgtggcgctgaacttc
atcggctctcgtggtgccaagcccggtgtcaccaaggagaggaggatcaagtacgccaag
gaggtgctgcagaaggaggtgctcccccacgtcggagtcagtgacttctgtgagaccaag
aaggcctatttcttagggtacatggtccacagactcctcttagcggccctgggcagaaga
gagctggatgacagggatcactatggcaacaagaggctagacttggctgggccgctgttg
gctttcctgttccgtggaatgttcaagaacctgctgaaagagatccgcatctacgcccaa
aagtttattgaccgagggaaggacttcaacctggagttggccatcaagacacgaatcatc
tccgacggcctgaagtactctctggccacggggaactggggtgacgtcaagaaggcccat
caggccagagctggtgtgtcccaggtgctgaaccgcttgaccttcgcctccaccctctct
caccttcgtcgtgtgaactcccccatcggtagggacggcaagctagccaagccccggcag
cttcacaacacgctgtggggcatggtgtgccctgctgagaccccggagggtcatgctgta
ggcctagtgaagaacctggccctcatggcctacatctctgtgggctcccagccctctccc
atcctggagttcttggaggagtggagcatggagaacctggaggagatctcaccggcagcc
attgcggatgccacaaagatctttgtcaatggctgttgggtgggtatacacaaggaccca
gagcagctgatgaacacactgaggaaactgaggaggcagatggacatcattgtgtctgag
gtgtccatgatcagagacatccgagagagggagatccgcatctacacggacgccgggagg
atctgtcgtcctctgctgatcgtagagaagcaaaagctgctgctgaaaaggagacacatc
gaccagctgaaggagagggagtacaacaactacagttggcaggacctggtggccagcggc
gtggtggagtacatcgacaccctggaggaggagactgtgatgctggccatgacccctgat
gacctccaggagaagggcgtggcctactgttctacatacagccactgtgagatccacccc
tccatgatcctgggagtctgtgcttccatcatccccttccccgatcacaaccagtctccc
agaaacacataccagtctgctatgggtaaacaagccatgggtgtgtacatcaccaacttc
catgtgcggatggacaccctggcccacgtgctctactacccccaaaaacctttagtcacc
acccgctctatggagtacctacgtttcagagagctccctgcaggtatcaactcgattgtg
gctattgcggcgtacactggctacaaccaggaggactctgtcatcatgaaccgctctgcg
gtggaccgtggattcttcaggtctgtgttctaccgctcctacaaagagcaggagtcaaag
aaaggcttcgatcaggaggaaatctttgaaaaaccctcacgcgaaacctgttcgggcatg
aggcacgccatttacgacaagctggacgacgacggcttgatagctcccggagtgcgtgtt
tccggcgaggacgtcatcatcggcaagactgtgaccctgccggagaacgacgatgagctg
gacagcaccaaccggcgctacaccaagagggactgcagcaccttcctccgcaccagcgag
acgggcatcgtggaccaagtcatggtcacactcaaccaggagggctacaagttctgcaag
attagggttcgctctgttcgtatcccccagatcggtgacaagtttgccagtcgacacggg
cagaagggtacctgtggtattcagtacagacaggaggacatgcccttcacttgcgaggga
attaccccagacatcatcatcaacccccacgccatcccctctcgtatgacagtcggccat
ttgattgagtgcctgcagggcaaggtttcagccaacaaaggggagattggtgacgccacg
cctttcaacgatgcggtcaatgtgcagaaagtctccaacctgctgtctgaatacggatat
cacctgaggggcaacgaggtgttgtacaacggcttcaccggccgtaagattacctctcag
atcttcctcggtcccacatactaccagcgcctgaagcacatggtggacgataagatccac
tctcgggcccgaggcccagtccagatcctcaacagacagcccatggagggcagatcacgt
gacggaggtcttcgttttggggagatggagcgcgattgtcagatagcccacggcgcagct
cagtttctgcgtgagaggctgttcgaggcgtccgacccctaccaggtccacgtctgcaac
ctatgtggcctcatggccatcgccaacacccgcacgcacacctacgagtgcaggggctgt
cgcaacaaaacacagatctccctggtcagaatgccgtacgcctgcaagctgctcttccag
gagctcatgtccatgagtatcgcccctcgtatgatgaccagttag
DBGET
integrated database retrieval system
