Oncorhynchus gorbuscha (pink salmon): 124010828
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Entry
124010828 CDS
T07892
Name
(RefSeq) nuclear cap-binding protein subunit 1-like isoform X1
KO
K12882
nuclear cap-binding protein subunit 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03013
Nucleocytoplasmic transport
ogo03015
mRNA surveillance pathway
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124010828
09122 Translation
03013 Nucleocytoplasmic transport
124010828
03015 mRNA surveillance pathway
124010828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124010828
03041 Spliceosome [BR:
ogo03041
]
124010828
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
124010828
Spliceosome [BR:
ogo03041
]
Common components
Common spliceosomal components
Cap binding complex
124010828
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G_like_2
MIF4G_like
MIF4G
AAA_11
HmpF
AAA_13
Vfa1
WIT1_2_N
DUF1281_C
GBP_C
EMC3_TMCO1
RRF
Afi1
FapA
tRNA_bind_2
C24B10_03
Exonuc_VII_L
Motif
Other DBs
NCBI-GeneID:
124010828
NCBI-ProteinID:
XP_046179503
LinkDB
All DBs
Position
LG23:complement(38835108..38847406)
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AA seq
796 aa
AA seq
DB search
MSRRRHSDGDDGGQSHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTEALYLVRFLCDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYVVLSSLPWV
GKELYEKKDVEMDRLLNQIDGYLKRRLKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHMLDCQYPMPRVIFRMFDYTDAPEG
PVMPGSHSMERFVIEDNLHNIIKSHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYMRLDTMNTTCIDRLLNWFSHH
LSNFQFRWSWDDWTDCLALDADKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSALIPAD
PIFFYKYQDEANSALPGYAVAITVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKVLTDCDEGKLHILRVVYEVWRNHPQM
ISVLVDKLIRTQIVDCAAVANWLFSPNMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKDKLERQQHKKQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFSTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagaagacggcacagtgacggagatgatggaggccaatctcacaaaagaaggaga
acgtctgagcccattgagattgaggatcgcctggaatcactgatatgtcgagtgggagaa
aagagtacctcttccctggaaagcaatttggaaggtcttgcaggtgtcttggaagccgac
ctccccaattacaaaaacaaaatcctccgcattttgtgtgctgtggctcgacttctaccc
gaaaagctgacagtgtacacaacattagtgggccttctcaatgccaggaactacaacttt
ggtggggagtttgtggaggccatgatccgacaactcaaagagaccttgaaggccaacctg
tacaccgaagcactttacctagtgcgcttcctctgtgacctggtgaactgtcacgtgatc
gctgccccctccatggtggccatgtttgagaactttgttagtgtcactcaggaggaagat
gtgccacaggtgcgctcggactggtttgtctatgttgtactctccagtctcccctgggtt
gggaaggaactctatgagaagaaggacgtggagatggacaggctcctaaaccagattgac
ggttacctcaagaggcgactgaagactcatgtccccatgcttcaggtttggacagcagag
aagccacacccacaagaggagtacctggactgcctgtgggctcagatccagaagctgaag
aaggaccgctggcaggagcgccacatcctgcggccgtacattgcctttgacagcgtgctg
tgtgaggccctgcaacacaacctgccacccttcaccccacctgcccacatgctcgactgc
cagtaccccatgccccgcgtcatcttccgcatgttcgactacactgatgcccccgagggt
ccagtcatgccgggcagccactctatggagaggtttgtgattgaggataaccttcacaac
atcatcaagtcccactggaaagagaggaagacctgtgctgcgcagttgctcagctatcca
gggaaaaacaagatcccactcaactatcacattgtggaggtgatctttggagagctcttc
cagctgccctgtcccccccacatcgacgtcatgtacaccacactgctcatcgagctctgc
aagctgcagccaggctccctgcctcaagttttggcccaagccacagagatgatgtacatg
agactggacactatgaacactacttgcatagaccgactcctcaactggttctcccaccat
ttgagcaactttcagttccgatggagctgggacgactggacggactgtttagcgctggat
gcagacaagcccaagcccaagtttgtcaaggaggttctggagaaatgcatgaggctctcc
tatcatcagcggatagtggacatcgtcccgcccactttctcagccctcatcccagccgac
cccatcttcttttacaaataccaagatgaggccaacagtgcgctgccaggctatgccgtg
gccataacggtgggcaacgccatcaagaaccgggcctccaatgaggagatcctcaccgtg
ctcaaagacgtgccaaaccccaaccaggaagatgacgatgatgagggtgagggcttcaac
cccctaaagatagaggtgttcctgcagacactcctccatctggctgccaagtccttcagc
cactctttcagtgccctggccaagttccatgagattctgaaggtcctgacggactgtgac
gagggcaagctgcacatcctccgggtggtctacgaggtctggcggaaccacccacaaatg
atctctgtgctggtggacaagttgatccgtacacagattgtggattgtgcagctgtagcc
aactggctcttctccccaaacatggctcatgaatttaccaggttttacgtgtgggagatt
ctgcactccaccatccgtaagatgaacaaacacgtccagaagattcagaaagagctggag
gaggccaaggataagctggagaggcaacagcataagaagcagaaggacagtggcgatgag
gaggacatggagaagaacagtgaggatgaggacggtcagctggaggagcagatcgagcgt
ctgcaggagaaggtggagtcggcccagagtgagcagaagaacctcttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcacctggtgcgctgcgagacaggcagtgtggac
ttcagcacgccctggtacaagaactgcatcgagaggctgcagcagatcttcctcatgcat
catgtgaccatccagcagtacatggggaccctggagaacctgctgttcaccgccgagctt
gaccaccacatcctagctgtttaccagcagttctgtgccctgcaactctga
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integrated database retrieval system
