Oncorhynchus gorbuscha (pink salmon): 124011006
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Entry
124011006 CDS
T07892
Name
(RefSeq) pre-mRNA-processing factor 39-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124011006
Spliceosome [BR:
ogo03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
124011006
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
TPR_19
TPR_12
HAT_Syf1_CNRKL1_C
TPR_16
TPR_MalT
HrpB1_HrpK
UTP6_C
TPR_21
Motif
Other DBs
NCBI-GeneID:
124011006
NCBI-ProteinID:
XP_046179860
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All DBs
Position
LG23:18768420..18775142
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AA seq
721 aa
AA seq
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MAAEGSDLQDLSSNGLMEGPSAPEATEAVHHPTEMEEVSEENGGEEASEAAAATAYNMPL
VENEEEEDGELPADFDRLWKLAHDNPQDFSSWTDLLQYSEQESHMTASRRALVAFLARYP
LCYGYWKKFADLERRAGYTNKAQEVCVQGLKAIPLSVDLWIHYINLLLGTLNMNLPESSQ
CIRSAFEEAVAAAGLDFHSDRLWELYIEWEKEQGDMKAATGVYDRILRVPTQLYSSHYEK
FKTHLNAHGPKDVLSAVEYDGLLEESKQIHKTEKAELAEGEDELPPGEEKEPTEEEVIPK
MRELLLARREKVYQDLEGEVRKRWNFEEAIKRPYFHVKPLDRTQLKAWHSYLDWELTQLG
EGGEKEVETEPGSMEGQEEEQKEGSKSSGIIAGGDRRVRILFERCLIACALYEEFWTKYV
QYLEPQSLYEARGVFRRACEIHLAHKHTMHLQWATFEERHGDLTEARRVLESLETSIPGL
AMVRLRRAGLERRAGRLDESEALLRDAVDQAKETPHLHAFYSIKLARLLLKLCKNPSKAR
GVLQEALEISPDNGKLHLNLLELEVSGDPRGSPEGVQQCVTRALAAPLSPRTKILFSQRG
LQYAEDYGTSVQSVLTVYEEHQKLLKELGNKKRRAENGDSEDPEKMSKGEDGSTVPAPPP
APPTMPHVPMTTPPPPMMGGDMSAAHAGYAGYGSWYQQPQYGGYGGYQQPWNYNQGYYPP
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgaaggctcggatttacaagacctgagcagcaacgggctaatggagggtcct
tcggctccggaagccacggaggctgtccatcatccaacagagatggaagaggtatcagag
gagaatggtggagaagaggcttcagaagcagcagctgcgacagcatacaacatgcctctg
gtggagaatgaggaggaagaggacggagagttgccggcggactttgaccgactctggaag
ctggcccatgacaatccacaggatttttctagctggactgacctgctgcagtacagtgag
caagagagtcacatgacagcatcacgtcgagcgctggttgcctttctggcgcgatacccc
ctgtgctacggatattggaagaagtttgccgacttggagcgacgtgcaggctacaccaac
aaagctcaggaggtgtgtgttcagggtctgaaggccatccctctgagcgtagatctgtgg
atccactacattaacctgctactgggcacgctgaacatgaacctgccagagtcctctcag
tgcattcgcagtgcatttgaagaggcggtggcagcggcaggactagacttccactctgac
cgtctgtgggagctgtacatcgagtgggagaaggagcagggagacatgaaggctgccact
ggagtctacgacagaatcctcagagtccccactcagctgtacagcagccactatgagaaa
ttcaagactcatcttaatgctcatgggcccaaggacgtcctctcagcagtggagtatgat
gggttgcttgaggaatctaaacagatacacaagactgagaaggctgagttggctgagggg
gaagatgagttaccacctggggaagagaaggaacctacagaggaagaggtgattccgaag
atgcgagaactcctattggctcgcagggagaaggtgtaccaggaccttgagggagaggtc
aggaagaggtggaactttgaggaagctatcaagcgtccttatttccacgtgaagcctctg
gaccggacccagctgaaagcctggcactcctacctggactgggagctcacccagctggga
gaggggggtgaaaaggaggtggagaccgaaccaggctccatggagggccaggaagaggag
caaaaagaggggtcaaagagcagtgggatcattgccgggggtgaccggagggtacggatc
ctgtttgagcgctgtctgattgcctgcgcgctctacgaggagttctggaccaagtatgtt
cagtacctggaacctcagagtctgtacgaggcacggggagtgttcaggcgagcctgtgag
atccacctggcacacaaacacaccatgcacctgcagtgggccacttttgaggagaggcat
ggtgatctaacagaggcacggcgtgttctagaatctctggaaacctctatcccaggattg
gccatggtccggctgcgcagggcggggctagagagacgggcgggccggctagatgaatca
gaagctctgctcagggacgcggtggaccaagccaaagagactcctcacctccatgcattc
tactccatcaaactagcccggctgttgctgaagctttgcaagaaccccagcaaggcccgg
ggtgtcctgcaggaggcgctggagattagcccggataacggtaaactgcacctgaacctg
ctggagctggaggtgtctggtgaccccagagggtcacccgagggggtgcagcagtgtgtg
acccgggcgctggctgcacccctctccccacggaccaagatcctcttttcccagaggggc
ctacagtacgctgaggactatgggacttctgtgcaaagtgtgctaacagtctatgaggag
catcagaagctgctgaaagagcttggcaacaagaagagaagggctgagaacggagacagc
gaggacccagagaagatgagtaaaggagaagacggctccactgtgccggctccaccaccg
gcccctcccacaatgccccatgttcccatgacgacaccacctccacccatgatgggtggg
gacatgagtgcggctcacgcaggctacgcaggctatggaagctggtatcagcaaccacag
tacgggggatacggaggctaccagcaaccctggaactacaatcagggttactaccctccc
agctaa
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