Oncorhynchus gorbuscha (pink salmon): 124011088
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Entry
124011088 CDS
T07892
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo02010
ABC transporters
ogo04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
124011088
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
124011088
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
ogo02000
]
124011088
Transporters [BR:
ogo02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
124011088
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
Motif
Other DBs
NCBI-GeneID:
124011088
NCBI-ProteinID:
XP_046180040
LinkDB
All DBs
Position
LG23:complement(38347075..38392853)
Genome browser
AA seq
2299 aa
AA seq
DB search
MSISTQLGLLLWKNFTYRRRQTLQLLIEIVWPLLIFFILISVRLNYPPYEQHECHFPNKA
MPSAGTLPWIQGIICNANNPCFRNPTPGESPGVVGNFNESIISRLFSDAKKILLYSQNDR
NLDGFKDLIQALKTLQANTEGFKLKDFLHDNETLSTFLLRNASFSEHAVHQIIEADVNLE
KVLVKGFGVHLRDMCKSNGTSVEDFVTITDSEVSSLVQEILCRSPGSWLNQAESHFLNNL
DFLKPIRKDVRADPEAVQQVAEATDNLLESLGSLAIELASMKSWSDLRNEIIFLTENATS
SPSHMYQAVSRIVCGHPEGGGLKIKSLNWYEDSNYKALFGNHNTTDGEEPISAYDNASTP
YCNAMMRNMESSPVSRMIWQALKPLLMGKILYTPATPATQKIIHEVNRTFQELGVLRELG
GMWEEVRPKVWGFMESSEQMDLVRTLLKNNGTARFFTSQLAGTEWTVEDVSNFLTKHSED
TRPHGNAFTWREVFNETDQAIMSISRFMECVNLDKMEPVANEERMVNKSMALLDDRKFWA
GIVFPDIEANSSELPAIVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFS
YLQDIIEHSIITVVTGAKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAI
IIKSVVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLISASLLVVLLKMGNLLPYSD
PGVIFLFLGSFAVVTIMQCFLISTMFARANLAAACGGIIYFTLYLPYVLCVAWQDYVGFG
AKIVASLLSPVAFGFGCEYFALFEEQGIGIQWNNLFKSPMEEDDFSLTTAIFMMYFDSFL
YMVMTWYIESVFPGQYGIPRPWYFLFTKSYWFGEGDNRKTDFSQNKRRNCEAVCIEEEPA
HLKPGVFIENLVKVYPHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPT
SGTAYILGKDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYARLKGLSEEQVKSEIE
QILIDTGLLNKRTSKTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDL
LLHYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKG
PDPSLSSFHNSSSTVSFTKKEEDCPSESSSDAGLGSEHESEAATIETAPAASICESAFVA
PDVSLISSLIFEHVPAARMVEDLGHELTYILPYGAAKDGAFVELFKDMDDRLPDLGISSY
GVSDTTLEEIFLKVAEDNGVDTELPSDGTLPMPRRRIHHAFGGGNAFGGDHQSCLRPQID
DDNNEHNDSDAYPESRETDFLNGSDGKGSYQVKGWSLTRQQFVALIWKRFLYAQRSRKGF
FAQIVLPAVFVCVALVFSLIVPPFGKYPSLELQPWMYEEQSLFISDDAPEDANTQRLLSA
LTEGPGFGTRCMEGQPITDTHCTMGDEDWTIPEVPESLLELFRTGNWTMEEPSPTCACSC
DGRKKMLPECPTGAGGLPPPQMKISETDTLQNLTGRNISDYLVKTYAEIIGKSLNNKIFV
NEFRYGGFSLGARSTQVLPPAGEVDDAIARVRKIFELEKGAAADRFLESLSSFINGLDTK
NNVKIWFNNKGWHSMGAFLNVMNNGILRANLPPGQDPSKFGIRTFNHPLNLTKEQLSQVA
LMTTSVDVLVSICVIFAMSFVPASFVVFLIQERVSKAKHMQFISGVQPLLYWTANFIWDM
CNYIVPATLVIIIFVCFQQKAYVSSTNLPVLALLLLLYGWSITPLMYPASFFFKIPSTAY
VVLTSVNILIGINGSISTFVMELFGNNEVGGINDILKNVLLIFPHFCLGRGLIDMVKNQA
MADALERFGENRFRSPLEWDMVGKNLFAMAVEGVVFFIITVLIQYRFCIKPINLHTKLPP
VGEEDEDVARERQRIVNGLGHGDILELRQLTKVYKRKQKPAVDRLCVGIPPGECFGLLGV
NGAGKTTTFKMLTGDSVVTSGEAFLAGKSILREIDEVHQNMGYCPQFDAINDLLTGREHL
EFYAVLRGVPEKEVCEVAEWGIRKLGLVKYVDKAAGSYSGGNMRKLSTAMALIGGPPVVF
LDEPTTGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGS
VQHLKNRFGDGYTIILRVAGPDPDLPPVMKFIESKLPGSTLKEKHRNMLQYQLSSSLTSL
AHIFSILAKNKDLLRIEDYSVSQTTLDQVFVNFAKDQSDDYHSKDNSVKRKEALVDTTPL
SSQQAEEKLAEERLKESLV
NT seq
6900 nt
NT seq
+upstream
nt +downstream
nt
atgtccatctcaactcagctgggcttgctgttgtggaagaactttacctacagaagaagg
caaacactccaactgctgattgagatagtatggcccctgttgatcttcttcattttgata
tcagtgagactgaactaccctccgtacgaacaacatgagtgtcatttccccaacaaggcc
atgccctcggcaggcacccttccgtggatccaaggcatcatctgcaacgccaacaacccc
tgcttccgcaaccccactcctggagagtcccctggggtcgtgggcaacttcaatgagtcc
ataatctctcgtttgttctcggatgccaagaagatcctgctgtacagtcagaatgacagg
aatctggacggctttaaagacctcatccaagccctgaagaccctacaggccaacaccgaa
ggattcaagctgaaggatttcctccacgataatgagaccctgtccactttcctcctgcga
aacgcctccttctcggaacacgccgtgcaccagatcattgaggccgacgtgaacttggaa
aaggtgctggtcaaaggcttcggtgtccacctgagggacatgtgcaaaagcaacggcacc
agtgtggaggactttgtgaccatcacagacagcgaggtgtccagtctggtccaggagatc
ctctgccggtccccaggctcctggctcaaccaagcagaaagccacttcctcaacaacctg
gacttcctcaaaccaatacggaaagatgtgagggctgaccctgaagctgtccagcaagtg
gctgaggctacagacaaccttctggagagcctgggatccctggccattgagctggccagc
atgaagagttggagcgacctgcgtaacgagatcatcttcctcacggagaacgccacgtcc
tcccccagccacatgtaccaggccgtgtcgcgcatcgtctgcggccaccccgagggcggc
ggactaaagatcaagtccctcaactggtacgaggacagcaactacaaggccctgttcggc
aaccacaacacaaccgacggggaggaacctatctctgcctacgacaacgcatccactcca
tactgcaacgcgatgatgaggaacatggagtccagccccgtatccaggatgatctggcag
gccctgaagcctctgctcatgggcaagatcctgtacacccctgccactcccgccacacag
aagatcatccacgaggtgaacagaacgttccaggagctgggggtcctcagagagctgggg
ggcatgtgggaggaggtgaggcccaaggtctggggcttcatggagagtagcgaacagatg
gacctagtaaggaccctactgaagaacaatggcaccgccaggttcttcacctcccaactg
gcgggcacagagtggaccgtggaggatgtctccaacttcctgaccaaacattcagaggac
acacgtccccacggcaacgccttcacctggagggaagtcttcaacgagacggaccaggcc
atcatgagcatttcccgcttcatggagtgtgtaaacctggataagatggagcctgtggcc
aatgaggaaaggatggtcaacaaatccatggcactgctggacgataggaagttctgggcg
gggatcgtgtttcccgacattgaggcaaacagctctgaactgccggccattgtcaactac
aagattcgcatggacattgataatgtggagcgcaccaacaagatcaaagacggatattgg
gaccccggtcctcgtgccgacccctttgaggacctgcgctacatctggggtggcttctct
tacctccaagacatcatcgaacacagcatcatcacggtagtgactggcgccaaggagaag
acgggagtctacattcaacagatgccctacccctgctacgtggacgacatcttcctgcgg
gtgatgagtcgctccatgcccctcttcatgaccctggcctggatgtactctgtggccatc
atcatcaagagcgtggtttacgagaaggaggcgaggctcaaggagaccatgaggatcatg
ggattggacaacggcatcctgtggttcagctggttcatcagcagcctcatccccctgctc
atctccgccagtctgctggtggtgctgctcaagatggggaacctgctgccctacagtgac
cccggtgtcatcttcctgttcctgggttccttcgccgtggtaaccatcatgcagtgcttc
ctcatcagcaccatgtttgcccgtgccaacctggcggcggcctgcgggggtatcatctat
ttcaccctctacctgccctacgtcctctgtgtggcctggcaggactacgtgggctttggg
gcaaaaatagtggctagcctgctgtccccggtggcctttggctttggctgtgagtacttt
gccctgttcgaagagcagggcatcggcatccaatggaacaacctgttcaaaagccccatg
gaagaggacgacttcagcctgaccaccgccatcttcatgatgtactttgactccttcctc
tacatggtgatgacctggtacatcgagtccgtcttccccggtcaatatggtattcccagg
ccctggtacttccttttcaccaagtcctactggtttggagaaggagacaacaggaagact
gacttcagtcagaacaagagaaggaactgtgaagctgtctgtatagaagaagagccagcc
cacctgaaacctggcgtcttcatagagaacctagtcaaggtgtacccgcacgggaagaag
ctggctgtggacgggctgactctgggcttctacgagggacagatcacctctttcttgggc
cacaacggagcagggaaaaccaccaccatgtcgattctaacgggactgtttccacctacc
tctggcactgcttacatcttgggcaaagacatccgatcggagctgagcgctattcgacag
agtctgggcgtttgtccacagcacaacgttctcttcagcatgctgaccgtcgaggagcac
atctggttttacgctcgtctgaagggtctatctgaggaacaggtgaagtctgagatcgaa
cagatcctgatagacactggcctgctgaacaaacgcacttccaagaccagcacactgtcc
ggagggatgcagaggaagctctctgtggctctggccttcgtcggggggtcaaaggttgtg
attctggacgagcccaccgctggggtcgacccctacgcccgtcggggcatctgggatctc
ttgctccattatcgtcaaggtcgtaccatcatcctctccacccaccacatggatgaggct
gacatattgggcgaccgcatcgccataatctcccatggcaagctttgctgcgtgggctcc
tccctcttcctgaagaaccagctaggtacaggctactatctgaccctggtcaagaagggc
ccagatccttccctcagctccttccacaactcctccagcaccgtctccttcactaagaag
gaggaagattgtccctctgagagtagctctgatgcaggccttggcagcgaacacgagagc
gaagcggccaccatcgaaactgccccggcagcatccatctgtgaaagtgccttcgtggcc
cccgacgtctccctgatctccagcctgatcttcgagcatgtcccagccgcccgcatggtg
gaagacctgggccacgagctcacttacatactgccctatggcgcagccaaggacggagcc
ttcgtggagctcttcaaggacatggacgaccgtctccccgacctaggcatctccagctac
ggcgtctccgacaccaccctggaagagattttcctgaaagtggcagaggacaatggagtt
gacactgaactcccctctgacggtaccctccccatgcccagacgtcgcatacatcatgct
tttggtggaggaaatgcctttggtggagaccaccagagctgccttagaccccagatagat
gacgacaacaatgaacataacgactcggacgcatacccagaatccagagagacagacttc
ctgaacggctcggacggtaaaggctcctaccaggtgaaaggctggagtctgacgaggcag
cagtttgtcgccttgatatggaagaggttcctgtatgctcaacgctccagaaaaggtttc
tttgctcagattgtgctccctgcggtgtttgtttgcgtcgccctggtcttcagtctaatc
gtcccgccctttggaaaataccccagtctggagctgcagccgtggatgtacgaagaacag
tccctcttcatcagtgatgacgcccctgaagatgccaacacacagcggttattaagtgcc
ctcaccgaaggccctgggtttggaacgcgttgcatggaaggacagcctataactgacact
cactgtacgatgggcgacgaggactggaccataccagaggttccggagagccttctggaa
ctgttccgcacgggcaactggaccatggaggagccgtcgcccacatgcgcctgcagctgt
gacggccgcaaaaaaatgctccctgagtgtcctactggagccggaggactgccaccaccc
cagatgaagatcagcgagacagacaccctgcaaaacctgacgggcagaaacatctctgac
tacctagtaaagacctatgcagagatcatcgggaaaagtttgaacaacaagatctttgtg
aatgaatttaggtacggcggcttctcattgggcgccaggagcactcaggtcctcccccca
gctggcgaggttgatgacgctatcgctcgagtgagaaagattttcgagttggagaagggt
gctgccgcagaccgattcctggagagcttgtctagcttcatcaatggtctggacaccaag
aacaatgtcaagatttggttcaacaacaaggggtggcacagcatgggagcctttctcaac
gtgatgaacaacggcatcctgcgcgccaacctgccccctggccaggaccccagcaagttt
ggcattcgcaccttcaaccacccgctcaacctcaccaaggagcagctgtcccaggtggca
ctgatgaccacctcagtggacgtgctggtgtccatctgcgtgatcttcgccatgtccttc
gtcccagccagcttcgtagtcttcctcatccaggagagagtgagcaaggccaagcacatg
cagttcatcagcggcgtgcagcccctgctctactggacggccaacttcatctgggatatg
tgtaactacatcgtcccggcgacactcgtcatcatcatctttgtctgcttccaacaaaaa
gcctacgtgtcatccaccaacctgccagtgctggccctgctgctgctcctctatggctgg
tctatcactcccctgatgtacccggcttccttcttctttaagatccccagcacggcctac
gtggtgctcacctccgtcaacatcctcatcggcatcaacggcagcatctccacctttgtc
atggagctctttggaaacaacgaggttggaggcatcaatgacatcctgaagaacgttttg
ctgatatttcctcacttctgtttgggtcgaggactcatcgacatggtgaagaaccaggcc
atggccgacgctctggaaagatttggtgagaaccgcttccgatcccctctggaatgggac
atggtgggcaagaacctgtttgccatggccgtggaaggagtggtcttcttcatcatcacc
gtcctcatccagtaccgcttctgcatcaagcccattaacctgcacaccaagctccctccg
gtaggcgaggaggacgaggacgtggccagagagaggcagaggatcgtcaacggactggga
cacggagacatcctggagctccgacagctcaccaaggtctacaagaggaagcagaagccg
gcggtggaccgcctgtgtgtgggcatccctcctggagagtgcttcgggctcttgggtgtg
aacggagctggaaagaccaccactttcaaaatgctgacaggagactccgtagtcaccagt
ggagaggctttcctggccggaaaaagtatactgcgggagatagacgaggtgcaccagaac
atgggctactgccctcagtttgacgccatcaacgacctgctgacaggaagagagcacctg
gagttctacgccgtcctgcgcggcgtgcccgagaaggaagtgtgcgaagttgccgaatgg
ggcatccgtaagctggggctagtaaagtatgtggataaggcagcaggaagctacagtgga
ggaaacatgaggaaactctccactgccatggccctgataggaggaccacccgtcgtgttc
ctggacgagcccaccactgggatggaccccaaagcacgcagggccttatggaactgcatc
cacagcgtcatcaaggagggacgctccgtggtgctcacctcgcacagtatggaggaatgt
gaggccttgtgcaccagaatggccattatggtcaatggcaggttccgctgcttggggagc
gttcagcacttaaagaacaggttcggagacggctacaccatcattctgcgagtggctggg
ccggaccctgacctgccaccggtgatgaagttcattgagagtaagctgcctggcagcacc
ctgaaggagaagcacaggaacatgctgcagtaccagctgtcctcctcactcacctccctg
gcacacatcttcagcatcctggccaagaacaaggaccttcttcggatagaggactactcc
gtgtcgcagaccacactggaccaggtttttgtgaattttgccaaggaccagagtgacgat
taccactcaaaagacaattcagtaaagcgcaaagaggcgttggtggacactaccccgctc
agctcacagcaggctgaagagaagctagccgaggagaggctaaaggagagcttggtgtga
DBGET
integrated database retrieval system
