Oncorhynchus gorbuscha (pink salmon): 124011230
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Entry
124011230 CDS
T07892
Name
(RefSeq) collagen alpha-1(XXVIII) chain-like isoform X1
KO
K23619
collagen type XXVIII alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ogo01002
]
124011230
Peptidases and inhibitors [BR:
ogo01002
]
Peptidase inhibitors
Family I2: Kunitz - BPTI family
124011230
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
VWA
Collagen
VWA_2
Kunitz_BPTI
VWA_3
VWA_CoxE
Motif
Other DBs
NCBI-GeneID:
124011230
NCBI-ProteinID:
XP_046180333
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Position
LG23:60200925..60245814
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AA seq
1220 aa
AA seq
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MSPSLYWFLLLCRLHSLWAQDDYSTHDDRTMDRRAKNQLLTTNVIPKNGQSLLNDDCGLE
LAFLVDSSESAKDNHAQEKRFATDVVERLQGVNLQTGRALSSRAALLQFSSHVIIEQTFK
QWRGLANFKAHIALIGYIGHGTYTTYAITNLTKIYMEESEPGSIRVAILLTDGISHPRNP
DIFSAVVDAKNQGVKFFMVGITPAANDISNVAQLRRLASSPANRYLHNLQDRGIVEKVIK
EITELADEGCPLALKCACDKGERGPIGLQGKKGNSGDDGNPGVKGSKGEGGLSGLPGRNG
EEGKPGYKGEQGESGECGTPGIKGDRGPEGPVGTRGNRGLQGLPGPNGDAGPEGLIGKKG
ERGLSGPPGIQGETGIGLPGPKGDVGFQGRLGPPGPPGIGEPGLPGPQGPHGVQGEKGPI
GEGFAGPKGDRGLEGPRGPRGQPGAGLKGDKGGFGPPGFPGPVGLPGLGIQGEKGIEGPR
GPPGGRGPQGDGYPGPKGDQGLPGELGSTGERGAGEPGAKGEPGASGLAGFPGLPGEDGA
PGQKGEPGVGGLRGPEGAAGIGTQGEKGDQGQRGIRGLGGPPGIAGPSGAKGEPGTPGRL
GMPGLPGRGIIGPKGNLGPPGSSGPIGETGYGLPGPKGDRGGPGPSGPFGPKGDGYPGPT
GTPGLPGLPGEPGLEGLGIPGPKGDIGFRGFPGLAGPPGEGLQGLPGGTGRPGPPGPTGP
PGQGIQGPKGEAGSQGVTGPRGPPGEGFTGAKGDRGSGGERGLKGVKGDLGDPGVPGQSG
RPGFKGDMGLTREDIIKMIKEICGCGIKCKERPMELVFVIDSSESVGPENFEIIKDFVAA
LVDRVTVGRNATRIGLVLYSLEVKLEFNLARHMTKQDVKQAIRKIPYIGEGTHTGTAIRK
ATQDAFYSSRKGVSKVAIVITDGQTDKREPVKLDIAVREAHAANIEMYALGIVNTSDPTQ
LEFLRELNLIASDPDSEHMYLIDDFNTLPALESKLVSKFCEDENGGLIYNRVTNGYGNNG
YRNGNNGNYGNGGNGYGTTNQEDFNRRRTVTTTGTQSQGGRVDLTQPINPGTATVQVEKG
QREGGQDGGVYTPDWGTGRGDVPTLNRNTSSSSRDSSSSNTGGSSSSSSSGTSSSSSGSS
GSVQLVPASRPALPKEYVPLDPRCALVLDQGPCRDYKMRWYYDKQANACAQFWYGACEGN
QNRFDTEDECKRTCVQGRAG
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgtccccttctctgtactggttcttgctgctctgtagactccacagtctctgggctcag
gatgactatagtacccatgatgatagaaccatggacaggagagccaagaaccaactactg
acaaccaacgtcatacccaagaatggccaatcacttttgaacgatgactgtggcctggag
ctggccttcctggtggacagctcggagagcgccaaggacaaccacgcccaggagaagagg
ttcgccacagatgtggttgaacgcctgcagggggtcaatctccagacgggccgggctctc
agctcgcgagccgccctcctgcagttcagcagccatgtgatcatcgagcagaccttcaag
cagtggcggggattggccaacttcaaggctcacatcgcactcatcggatacatcggccac
ggcacctacaccacctacgccatcaccaacctgaccaagatctacatggaggagtcagag
ccagggagcatcagggtggccatactgctgacggatggcatctcccaccccaggaaccca
gacatcttctccgccgtggtcgacgccaaaaaccagggtgtgaagttcttcatggtgggc
atcacgcccgcggccaatgacatctccaacgtggcacagctccgtcggctggctagctcc
ccagccaatcgctacctacataaccttcaggacaggggcatcgtggaaaaggtcatcaaa
gagattacagagttggctgatgaggggtgtcctctggccctgaagtgtgcgtgtgacaag
ggagagaggggacccattggcctccagggcaagaaggggaattctggagatgatgggaac
ccaggtgttaaaggatcgaagggtgagggcgggctcagtggacttcctggtcgaaatggg
gaagagggcaagccgggctacaaaggagagcagggggagagtggagaatgtggcacacct
ggaatcaaaggagacagggggcctgaggggccagttggcaccaggggaaacagagggcta
caggggttacctggtccaaatggcgatgccgggcctgagggtctcatagggaaaaaaggt
gagcggggactttctgggccacctggaatacaaggagaaactgggatcgggcttcctgga
cccaagggtgatgtggggttccaggggcgactggggcctccgggaccacctggcataggg
gaacctggactaccggggcctcaagggccacatggcgtccaaggagagaagggtcctata
ggagaaggcttcgccgggccaaagggggaccggggcctggaggggccgaggggacccaga
ggacagcccggcgctggactgaaaggagacaagggtggctttggccctccaggttttcca
gggcctgtcggcctgccaggcctgggcattcagggggagaagggtatagaggggccacgg
gggccaccagggggcaggggcccacaaggagatggatatccagggcccaagggtgaccag
ggcttaccaggggagcttggttcaacaggagagagaggggctggcgaacctggggctaag
ggtgagccaggagcgtcaggattggctggttttcctggcctcccaggagaggatggggcc
ccgggacagaagggtgaaccaggtgttggtggtctgaggggaccagagggagctgcgggg
attggcacccagggtgagaagggagaccagggccagaggggcattcggggcttgggtggg
cctcctggaatcgccgggccctctggagcaaagggggagcctgggacaccaggtcgactg
ggtatgccaggacttccagggcggggaatcataggacctaagggcaatcttggcccacct
ggttcatctggaccaataggagagacaggctacgggctgcctggtcctaagggtgatcgt
ggaggtcctggtccgtctggtccatttgggcccaaaggcgatggttatcctggccctacg
ggaactcctggtctaccggggcttcctggtgaaccaggcctggaggggctgggcatccct
ggaccgaagggtgatattggcttcaggggctttccaggtttagcaggcccccccggcgag
gggctacaaggtctaccgggtggcactggacgaccgggccccccagggccaacggggccc
cctgggcagggtattcaggggccaaagggcgaggcagggtctcagggcgtgacgggccct
cggggaccaccaggggaaggattcacaggggccaagggtgaccgcggctctggaggggag
aggggcctgaagggggtcaaaggtgatttgggtgaccctggagttcctggccaatcaggc
agaccagggttcaaaggcgacatgggcctcacaagagaagacatcattaaaatgatcaag
gagatttgtggttgcggaatcaaatgcaaggagcggcccatggagctggtgttcgtcatt
gacagctcggagagcgtggggccggagaactttgagatcatcaaggactttgtggcggcc
ctggtggaccgcgtgacggtgggccgcaacgccacccgcatcggcctggtcctctacagc
ctggaggtcaagctagagttcaacctggcgcgccacatgaccaagcaggacgtcaaacag
gccatacgaaaaatcccttatataggtgagggcacccacacgggcaccgccatccgcaag
gccacccaggatgccttctacagctcgcgcaagggggtcagtaaagtggctatagttatt
acggacggacagacggataagcgggagccggtgaagctggatattgcggttcgggaggca
catgcagccaacatcgagatgtacgcattggggatcgtgaacacgtcagaccccacgcag
ctcgagttcctgagggagctcaacctgatcgcgtcggaccctgatagtgaacacatgtac
ctcattgatgacttcaacacgctgccagctctggagtccaagctcgtcagcaagttctgt
gaagacgagaacggtggtctgatatacaaccgtgtcaccaacggctacggcaacaatgga
tacaggaacgggaacaatgggaactatggcaacgggggcaatggctatggaaccaccaac
caggaggacttcaacaggaggcgaacagtcaccactaccggcactcaaagtcagggtggc
agggtagacctgacccagcctatcaaccctggcactgccacagtacaggtcgagaaaggg
cagcgtgagggaggccaggatggaggtgtttacaccccagattgggggactggtcgcggg
gacgttcccacgttgaaccgcaacacatcctcctcctccagggattcctcatcttccaat
acaggagggtcctcttcctcatcatcatcaggaacgtcatcttcatcctcagggtcctca
ggctctgtccagttagtgcctgcatcacgacccgcacttcccaaagagtatgtgcctctg
gaccctcgctgtgcactggtcctagaccagggcccctgtcgggactacaaaatgcgctgg
tactatgacaagcaggccaacgcatgcgcccagttctggtacggagcctgtgaggggaac
cagaaccgcttcgacacagaggacgagtgtaagaggacatgcgtgcaaggcagggcaggc
tga
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