Oncorhynchus gorbuscha (pink salmon): 124011334
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Entry
124011334 CDS
T07892
Symbol
polr1a
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124011334 (polr1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ogo03021
]
124011334 (polr1a)
Enzymes [BR:
ogo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124011334 (polr1a)
Transcription machinery [BR:
ogo03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
124011334 (polr1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
DUF272
YceG
Motif
Other DBs
NCBI-GeneID:
124011334
NCBI-ProteinID:
XP_046180566
LinkDB
All DBs
Position
LG23:21698019..21709468
Genome browser
AA seq
1703 aa
AA seq
DB search
MLFGKEVPWRRLEGMTFGMYTAEEIRKLSVKNITNFRFLDNVGNVAPNGLYDLSLGPADS
KEVCSTCMQDFNNCPGHLGHIELPLPVYNPLFFDKLYLLIRGSCLNCHMLSCPRAAIHLL
LNQLKLLDVGALQEVYELEHVLNQFLEGNVQASGVEIQVVLEDYCAHVNKRKTGDDHSSP
IKHICEKKNKLITLFWRVQMNSRKCPHCKSGRSQVRREHNSKLIVTLPAAMYKDGAIKGP
DEEDGMAGKRGYLTPSTARDHIAKLWDKEGFFLKCLFSGLEELESSPSGFYPDLFFMELM
VVPPCRYRPINRLGDQMFTNGQTVNMQAVMKDSGVIQKLLALLAGEKLKEKELQLEEVQE
ADPSQTDQAFLAGIPGATLTDKLYNTWIRLQSHVNIVFDSDMDKLMTEKYPGIRQILEKK
DGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGVPMVFATKLTYPQPVTPWNVKELRQAV
LNGPNVHPGASMVINEDGSRTILSSTNLTQREAIAKQLLTPCTGQHMMPMKIVNRHIKNG
DVLLLNRQPTLHRPSIQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGR
AEAYTLVSTDQQYLVPKDGKPLAGLIQDHMVSGTRMTIRGCFFSRDQYTELVYRGLTDKV
GRVKLLPPAILKPFPLWTGKQVVSTLLMNVIPGNHIPLNLTGKAKIPSKVWIKESPRCVP
GYKPETMCDSQVIFRQGELLVGVLDKAHYGSSAYGLVHCCYELYGGETSGKLLSCLARLF
TAYLQLYRGFTMGVEDILVKRGANRQRKQIIKESVTCGTKALQAAFNLPDTVDESEARGR
WQDAHLNPDQRDFNMVDLKFKEVANQVNNDINKVVMPLGLHCSFPENNLQLMVQSGAKGS
TVNTMQISCLLGQIELEGRRPPLMPSGKSLPCFQPYESSPRSGGFVSGRFLTGINPPEFF
FHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLTVRDSDGSVVQFLYGEDGLD
VPKTQFLQPRQFPFIQDNYEVIRKSKCLDEVLAKLDPQAATNHFKAIRKWKAKREHLSPR
EGAFLLFSQKKLKKAERQALENLANGRDTATLKLVDRWSSLDQDSRSKYLKKTSHCPEPC
LSLFRPDISFGSVSETFESIVESYLKDIQVKQLPEGSSKNLDAQRLKHLLQLKWQRALCD
PGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMIASSSIKTPMMSI
PVLNSKKAIKRVKTLRKKLTRVCLAEVLHKVDVLETLRVKNKQQKDRVFKIIFRFLSPER
YQEDKMLTPHQILHYMENRFFRLLLEAIKKRNTKLASINAVETRKATVRDNDQDVGDSSA
RQESGEGDGEEESMIVDDVGNEGDADASDAKRRENQEEEVDYESEEGEDAEGEDLVEEKE
EPAEENSEEVPDEVPGDLATEEPGGAGARKRSKQKSTHTQDSMRVNTVLETSSSIEGYSY
DSQQGLWCEVTLILPVSKVHFDLTSLVVAVAQNAVVMETKGITRCLLSEVTKKDGSKELE
LKTEGINMHELFNHSEILDVNRLYSNEVHAMANTYGIEVALRVIEKEIKDVFAVYGIEVD
PRHLSLVADYMCFEGVYKPLNRFAIQSNSSPLQQMTFETSYKFLKQATMLGSRDKLVSPS
ACIVVGKVVKGGTGIFDLKQPLQ
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgctttttgggaaagaagtaccatggaggcggctggagggaatgacatttggaatgtac
actgcagaagaaataagaaagttgagtgtcaagaacataaccaacttcagattcctggat
aatgttggtaatgttgcccccaatggcctctatgacctgtcattgggcccagctgattcc
aaagaggtgtgctccacctgtatgcaagacttcaacaactgccctgggcaccttgggcac
atcgagctacccttacccgtatacaacccactcttctttgataaactgtacctgctgatc
cgagggtcatgtctgaactgccacatgctgtcctgccccagagcagcgatccatctcctg
ctgaaccagctgaagctgttggatgtgggagctctacaggaggtctatgagctggagcat
gtgctgaaccagttcctggaaggcaatgtccaagcttctggggttgagatccaggtggtg
ttagaggactactgtgctcatgtcaacaaacggaagacaggcgacgatcacagctcacca
atcaagcatatctgtgagaagaagaacaagcttataacactcttctggagggtccaaatg
aactccaggaaatgccctcactgcaagagtggccgatcacaagtgcgcagggagcacaac
agcaaactgattgtcaccttgcctgcggctatgtataaagatggtgccatcaagggaccc
gatgaagaagatgggatggctggaaaacgtggatacttgacccctagcacggcacgggat
cacatcgccaaactttgggataaagaaggtttcttcctgaagtgtttgttctctggactg
gaggagttggagagctcacccagtggcttttaccctgaccttttcttcatggagcttatg
gtggtccctccatgcaggtatcggcccattaaccgtctgggagaccagatgttcactaac
ggccagacggttaacatgcaggcagtgatgaaggacagtggcgttatccagaagctccta
gcacttctagctggagagaagctgaaggaaaaggagttgcagctggaggaggtacaggaa
gccgacccctctcagacagaccaggccttcctggcagggatccccggtgccacactcaca
gataaactctacaacacctggattcggctccagagtcacgtcaatatagtctttgacagt
gacatggacaaactgatgacggagaagtaccctggcattcgtcagatcttagagaagaag
gatggtttgttcaggaagcacatgatgggcaaacgtgtggactatgcagcacgctctgtt
atttgtcctgacatgtacattgggaccaatgagattggagtacccatggtgtttgccaca
aagctgacttacccccaacctgtgacgccttggaatgttaaggagctgaggcaggcagtt
ctgaacgggcccaatgttcaccctggggcctccatggtcattaacgaggacggctcccgc
accatcctgagcagtactaacctcacccagagagaggccatcgccaagcagctcctcaca
ccctgcaccgggcagcacatgatgcccatgaagatagtgaatcgtcacatcaagaatggt
gacgtcctgctcctcaaccggcagccaacactgcatcggccgtccatccaggctcactgc
gcccgcatcctgccaggggagaaagtgttaaggcttcactacgctaactgtaaggcctac
aacgctgactttgatggggatgagatgaatgcccatttccctcagagtgaactgggcagg
gctgaggcctacacacttgtcagcactgaccagcagtaccttgtgcccaaggatgggaag
cctctggcaggtctgatccaggatcacatggtgtcaggcactaggatgaccatccgcggc
tgcttcttctcccgtgaccagtacactgagctggtctaccgaggtctgaccgacaaggtc
ggcagagtcaagctgctgccgcccgccatactcaaaccattccctctctggactgggaaa
caggtggtgtctacactactgatgaacgtcatcccaggaaaccacatccctctgaacctg
acagggaaggccaagatccccagtaaggtctggatcaaggagtctccacgctgtgttcct
ggctacaagcctgaaaccatgtgtgactcccaggtgatcttccgtcagggagagttgcta
gtgggggtgttggacaaggcccactatggcagctcagcatatggcctggtccactgctgc
tatgagctatatggaggagagaccagtggtaaactcctcagctgcctggctcgcctcttc
actgcctacctccagctgtaccgggggttcactatgggtgtggaggatatcttggtgaaa
cgaggagccaacagacagagaaagcagatcataaaagagtctgtcacgtgtgggactaag
gccttgcaggcagcctttaacctgcctgacaccgtggacgagagtgaggctaggggccgc
tggcaggacgcccacctcaacccagaccagagagacttcaacatggtggacctcaagttt
aaggaggtggccaatcaggtcaacaacgacatcaacaaggtggtcatgcccctgggtctc
cactgcagcttccctgagaacaacctccagctgatggtgcagtctggggctaaaggctcc
actgtcaataccatgcagatctcctgtctgctgggtcagattgagctggagggtcgacgt
cctcccctgatgccttctgggaaatctctgccatgcttccagccgtatgaaagttcgccc
cgctctggaggttttgtgtctggcaggttcctgacaggaatcaatcccccggagtttttc
ttccattgcatggctggccgggagggtctggtagatacagctgttaagaccagtcgatca
gggtaccttcagagatgtgtgatcaaacacctggagggcctggtggttcagtatgacctg
actgtgagggacagtgatggcagcgtggtccagtttctctatggagaggatggtctggac
gtccccaagacacagttcctccagccaaggcagtttcccttcatacaggacaactatgag
gtcatcagaaagtccaagtgcttggatgaggtcctggccaaactggaccctcaggctgcc
accaaccatttcaaagccatcaggaagtggaaagccaagagggagcatctttctcccagg
gagggggccttcctgctcttctcccagaagaaactgaagaaggcagagcgccaggctcta
gagaacctggccaatggcagggatactgccactctgaagttggtggatagatggagttct
ctagaccaggacagcagatctaagtacctgaagaagacttcacactgtcctgagccctgc
ctgagcctgttcaggcctgacatctcatttgggtcagtgtcggagacgtttgaaagcatt
gtggagtcctatctaaaggacatccaagtcaagcagttacctgagggaagctcgaagaac
cttgatgcacaaagactaaagcatctgctgcagctgaagtggcagcgagccctgtgtgac
ccaggggaggcggtgggtctgctggctgctcagagcatcggagagccctccacccagatg
accctcaacactttccattttgccggcaggggggagatgaacgttaccctcggtatccca
aggcttagagaaatattgatgattgccagttccagcatcaagactccgatgatgagtatt
cctgtgttaaacagtaaaaaagccatcaagcgggtgaagacactaaggaagaagctgact
cgcgtgtgtctagctgaggtgttgcacaaagtggatgtcctggagacactccgggtgaag
aacaaacaacagaaggaccgcgtcttcaagatcatcttccgctttctttccccagagcgc
taccaggaagacaagatgctgactccccatcagatcctccactacatggagaacagattc
ttccgcctactactggaggccattaagaagcgcaataccaagctggcctctatcaacgca
gtggaaacacgcaaggctacagtacgagataatgaccaggatgtaggggactcctcagct
agacaggagagtggagaaggggatggggaggaggagagcatgattgtggacgatgtgggg
aatgagggagacgctgacgcctcagatgcgaaaaggagagagaatcaggaggaagaagtg
gattatgagagtgaggagggagaggatgctgagggagaggacctggtggaggaaaaagag
gagccggcagaggagaactctgaagaggtgcctgatgaggtgcccggtgacctggccact
gaagagcctggtggtgctggggcaaggaagaggtcgaagcagaaaagcacacacacacag
gacagcatgagggtcaacactgtgctggaaactagttccagcatcgagggctattcctat
gacagccagcagggtctctggtgtgaggttacgctcatcctgcctgtcagcaaggtgcac
tttgacctgacgtcgctggtggtggccgtggcccaaaatgcagtggtgatggagactaag
ggcatcaccagatgtctgctcagtgaggtcactaagaaagatggctccaaggagctggag
ctcaaaactgagggcatcaacatgcacgagctgtttaaccacagtgaaattcttgatgtg
aatcggctgtactccaatgaggtccacgccatggcaaacacgtacggcattgaggtggcc
ctgagagtcattgagaaggaaattaaagatgtcttcgctgtctacggtattgaggtggac
cccaggcatttatccttggtggcagactacatgtgttttgagggcgtgtacaaacctctc
aaccgcttcgccattcagtccaactcttctccactgcaacagatgaccttcgagacgagc
tacaagttcctgaagcaggccactatgttgggctcccgtgataagttggtctctccctca
gcttgcatagtggtgggtaaggttgtaaaaggagggactgggatctttgatctgaagcag
ccattgcaataa
DBGET
integrated database retrieval system
