Oncorhynchus gorbuscha (pink salmon): 124011550
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Entry
124011550 CDS
T07892
Name
(RefSeq) protocadherin-11 X-linked-like
KO
K16498
protocadherin delta 1
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
124011550
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ogo01009
]
124011550
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
ogo04515
]
124011550
Protein phosphatases and associated proteins [BR:
ogo01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124011550
Cell adhesion molecules [BR:
ogo04515
]
Cadherins
Protocadherins
124011550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
DUF6249
TMEM154
Motif
Other DBs
NCBI-GeneID:
124011550
NCBI-ProteinID:
XP_046180964
LinkDB
All DBs
Position
LG23:complement(6679513..6733010)
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AA seq
1038 aa
AA seq
DB search
MIMDLAGQTHVLVVLLTCLVMLSWAQEKDYTVREEQPENVRIGNLRKDLDLNLDPDFKLT
SPLQFKPVYKTGDVPLVRVEANTGEIFTTAHRIDREKLCSGVFSEKRCFYEIEVAVLPDE
IFRLVKIRFLIEDINDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYEL
VKSVSEFGLDIIETPEGDRWPQLIVQQSLDREQKDTFVMKIKVEDGGTPPKSSTAILQVT
ISDVNDNRPVFKDSEVEVNIPENAPIGTSVTQLHATDADLGSNAQIHFSFSNQISSSTKR
HFSIDSTTGLITVKQPLDREATPVHKLIVLASDGSSTPSRAAVIVNVMDINDNVPSIDTR
YIMNLVNGTVLLSENAPLNTKIALITVTDKDSDLNGKVTCYTDHDVPFRLKPVFNDQFLL
ETAAPLDYETTREYAIKIVASDSGKPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPEN
NDPSTQLIKISAMDADSGHNAEIIYSLGPDAPDGFNIDRRSGILSVGKRLDREKQEKYSF
TVMARDNGSTSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDSD
AGDNSVITLSILNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAIDGGQPPSTSYAK
VTINVVDVNDNRPVFVIPSSNYSYDLVQSTTSPGSVVTRVFAIDNDTGMNAELQYSFIGG
SPRGLFSIDKTTGNITLQEKIVSADQGLHRLVVKVKDLGQPESLHAIALIHLFINETVSN
ATFILEQLRKSLETPLDRNVGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTALVRCRQ
TPRHKVVQKGKQSGEWVSPNQENRQIKKKKKKKKRSPKSLLLNFVSIEESKPDDPSQEHI
NGTLDLPVELDEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPMAPNKH
HVIQELPLDNTFVVGCDSHSKCSSTSSDPYSVSECSCQGGFKTPGQIHTRQETALKPPLY
DTLCGSGTSRCHRIKINL
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atgattatggacttagcaggtcagactcatgtgttggtggtgttgctcacctgcctggtc
atgctgtcctgggcccaagagaaggactacacggtgagggaggaacagcccgagaatgtc
cgcatcgggaacctacggaaggacttggacctgaaccttgaccctgacttcaagctgacc
tcgccactgcagtttaagcctgtctacaaaacgggcgatgtgcctttggtgagggtagag
gccaacaccggggagatcttcaccacggctcaccgcatcgaccgcgagaagctctgctcg
ggagtattcagcgagaagcgctgcttctacgagatcgaggtcgccgttctgcctgacgag
atcttccgtctggtcaagatccggttcctgattgaggacatcaatgacaacgctccactc
ttccagtccaccgtaataaacatctccatcccagagaacactgccatcaacacccggtac
cccgtgccctctgcatttgacccagatgtggggatcaatgggatccaacactatgaactt
gtcaagagtgtgagtgagtttggcctggacatcatcgagaccccagagggagacagatgg
cctcagctgatcgtccagcagagcctggaccgcgagcagaaggacaccttcgtcatgaag
atcaaggtggaggacggaggaacgccacccaagtccagcacggccatcctccaggttacc
atctccgacgtcaacgacaatcgaccggtcttcaaggacagtgaggtggaggtgaacatc
cccgagaacgcccccataggaacctccgtcacccaactccacgccacagacgcagacctc
ggctccaacgcccagatccacttctccttctctaatcagatctcctcatccaccaagagg
catttttctatcgacagcaccaccgggctgatcactgtcaagcagcccttagacagagaa
gccactccagtccacaaactcattgtcctggccagcgacggcagctccaccccctccaga
gctgctgttatcgtcaacgtaatggacattaatgacaatgttccgtccatagacactcgg
tacataatgaaccttgtaaatggaacggttctactgtcggagaatgctcctctcaacaca
aaaatagccctaattacagtgacggacaaggactctgatctgaacggaaaagtgacttgt
tatactgaccacgatgttcctttcaggttaaagcccgtctttaatgaccagttcctgctg
gagactgcggcccccctagattacgaaacaaccagggaatatgcaattaagatagtagcg
tcggattctgggaagcctcctttgaacacgtcagcgatggttttaattaaaattaaggat
gagaatgacaacgctcccatcttccctcagcctgagattcagctgtccataccagagaac
aatgatccatccacgcagctcataaagatcagtgccatggacgcagacagcggacataat
gcagagattatttattctcttggccctgacgctcctgatgggtttaacatagatcgacgg
tcaggaatcctctccgttggcaaacgcctggacagagagaagcaggagaagtattcgttc
actgtcatggcgagggacaatgggtctacttccctgcagagcaatgtcacagtgaggtta
atagtgcaggacctcaacgacaacagcccagctttcacccatcctgagtataacttctac
gtgcctgagaacctgcctctgtacgggaccgtgggcctgatcaccgtcacagattcagac
gcaggtgacaactccgtcataacactgtccatcctgaacgggaaagacaatttcattatt
gatccccagaccggtgtgatcaaacccaacatcacgtttgatagagagcagcaaagctca
tacacttttatggtgaaggctatagacggagggcaaccacccagcacttcatacgccaag
gtcaccataaatgttgtggatgtcaatgacaatcgacccgtttttgttatcccctcatcc
aactactcttacgatctggtccagtctaccaccagccctgggtctgtggtcaccagagtg
ttcgctatagacaatgacactggcatgaatgctgagctgcagtacagtttcattggggga
tcaccaagagggctgttttccatagacaaaacaactggtaatataactctgcaggagaag
atagtctcagccgatcagggtttacacaggctagtggtgaaagtcaaagacctgggccag
ccagagtccttacacgcaatcgctctcattcacctgttcattaacgagactgtatccaac
gctacgttcattctagagcagctacgtaagagcttggagactccattggaccgtaacgtg
ggagacagtgaggtcacaccccaagccaacggatacgtgattgttgtcatcgcaattata
gctgggactatgacagtcatcttagtcatcttcgtgacggccttggtgcgctgccgtcag
actcccaggcacaaagtggtgcagaagggcaagcagagcggcgagtgggtgtcgcccaac
caggagaaccgtcaaatcaagaagaaaaagaagaaaaagaagagatcccctaagagcctc
ctcttgaactttgtcagcatagaagaatccaagcctgatgatcccagccaggagcacatt
aatggaaccctggacctgcctgtggagctagatgagcagaccatggggaaatataactgg
gccactactccgaccaccttcaaacctgacagcccagacttagccaagcattacaagtct
gcctctccccagccaaccttccaaatcaaaccagagaccccgatggcgcccaataaacac
cacgtgattcaggagctcccgctagacaacacgtttgtggtgggctgtgactcgcactcc
aagtgctcctccaccagctcagacccgtactcggtctcagagtgcagctgtcaaggggga
ttcaagactcctgggcaaatccacaccagacaggagacggcactgaaaccacccctctat
gacacactctgtggctcaggtacaagtcgctgccacaggataaaaatcaatctctag
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integrated database retrieval system
