Oncorhynchus gorbuscha (pink salmon): 124011991
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Entry
124011991 CDS
T07892
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XIV) chain
KO
K08133
collagen type XIV alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ogo00535
]
124011991
Proteoglycans [BR:
ogo00535
]
Extracellular matrix (ECM) proteoglycans
Others
124011991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
Fn3_nematode
DUF4959
VWA_3
DUF4992
New_glue
Motif
Other DBs
NCBI-GeneID:
124011991
NCBI-ProteinID:
XP_046181267
LinkDB
All DBs
Position
LG24:complement(30705071..30800104)
Genome browser
AA seq
1894 aa
AA seq
DB search
MPATGLKTWVWNPLLCLALISLSPAPAPAQGQVATPRRLRFKVLSATQLHVSWKEPKGDF
ESYRFIYSTQSDAEETELEVTKKEAKVIIDFDPRQLYTVKVTAVKGAQESKPLLGTFEAQ
LSEPDVKNVQPQNVRPKHQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRIN
FRLVRMFLENLVSAFHVEFDKTRIGLAQYSGDPRIEWHLNTFTTKEAVIDAVKNLPYKGG
NTLTGLALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVQPPARSLREAGIELFAIG
VKNADEKELKAIGSPPEETHVYNVADFSVMSSIVEGLTRTVCDRVEQLDKAIKGDTGPEV
TMAAPRDLVTSEVTARSFRVSWTHAPGTVEKYRVVFYPASGGQPEEKVVQGTVDTVVLNY
LLSLTEYQVAVFAIYASSASEALRGSTTTLALPMVNNLELFDITHNSMRARWRVAEGASG
YMILYAPLTEGDAADEKEVKVAETVNEVELENLTPDTEYTVTVYAMYGEEASDPMTSQET
TLPLTPARNLRFSDVDHSSARLTWEATSKKANGYRIMYVKTNGVQTNEMDVGRITTLLLR
NLTSLTEYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNLKTSEVSTESFRVTWDHSAQDV
VLYRLTWTPTRGGDTKEMLVNGNRNSHLLTGLRPITEYEVSLIAVFRNEEESDAVTLTES
TVARTTTTTKATTTTTTTRATTTAVVHLGARNLLLSDHTTFSMEVSWELQDRNVRLYRVA
YVTARGDRAEETKMVPGGQNSLLLQPLLSDTEYKVTVTPVYTDGDGPGVSRMGRTLPLSA
PRNLRVSEEWYNRFRITWDTPPSPTMGYRVVYKPISAPGPALETFVGEDVNTMLILNLMS
GTEYGVRVIASYTTGSSEALTGKARTLYLGVTNLNTYQVRMNSMCAQWSSHRHATLYRVV
IESLLNGHKQEARLGGGATRHCFNDLTANTQYKISVYAQLQDTEGPAVTTTERTFPVPTP
APTRPPTTTPLPTIPSTKEVCKAAKADLAFLVDGSWSIGDESFLKIIRFLYSTTGALDTI
GPDGTQVAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFT
VGGGIRRGIPKVVVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPS
ERHVFFVDDLDAFQKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGLYGR
VSGVSMEPGTFNSFPCFRLHNNSLHAQPTKFIHPEGLPSDYTITMLFRLLPETPKEPFAL
WEILNKDNEPLVGVILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHLAIS
KTNAKAVIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGXKDNSAPFQLQSFDIVCSTS
WASRDKCCELPGLRKEEDCPAMPRACTCTQDSKGPPGPTGPPGGPGIRGGRGDRGEPGAV
GPIGPVGDAGTPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGAPGIQGIPGSPGSPG
REGQTGTRGLPGKDGPQGRTGPPGTMGTPGAPGSPGSSGPQGSLGDQGPPGSAGNKGEKG
ERGDLQSQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTIPGPPGEPGRQGGQ
GPQGEQGPAGRPGFPGSNGENGQPGGRGLSGEKGDKGSPGVGVQGPRGPVGPPGPTGQGR
TGSQGPSGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGVQLPPNVYQNYDEAG
EEDPYRYDAGGYPSEYYQPNYPAPRPVEPENPALTQGDEVLRSPGIHRSSRSLAEEEEEK
EKKKEEEGPEERKMVGPMRESRLRRALRRSGTHD
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atgccggctacaggactgaagacgtgggtatggaatcctctactctgtctggctcttatc
tctctctcacctgcaccagctccagctcagggtcaagttgccactccacgaagacttcgt
ttcaaggtcctgagcgcaacccagctgcatgtgtcgtggaaagagcctaaaggagacttt
gaaagctacagatttatttatagcacacaatcagatgcagaggagactgaactagaggtg
acaaagaaggaagccaaagtgatcatagactttgaccccagacagttatacacagtcaag
gtcactgctgtgaaaggtgctcaggagagcaagccacttctaggaacatttgaggcccaa
ctttcagagcctgacgttaagaacgtacagccccagaatgtacgccccaaacaccagaaa
gacaccagtgtcacagaggagaacaatgagatatctgaagagcagttcatgtgtaagacc
ccggccatagcggatattgtgatcctggtggacggatcatggagtatcggacggataaac
ttccgtctggtccgcatgttcctggagaatctggttagcgccttccatgtggagtttgac
aagacacggataggtctggcccagtatagtggtgatcccaggattgagtggcacctgaac
actttcaccaccaaagaagcagtcatcgacgctgtgaagaaccttccttacaaaggaggg
aacacactgacgggtcttgcattgacgtacatccttgagaacagttacaaacccgagtcc
ggatccagggccggcgttcccaaaattggaatcctgatcacagatgggaagtctcaagac
gatgtccaacccccggcacggagtctgagagaggcgggaatagagctgtttgccattggt
gtgaagaacgccgatgagaaagagctgaaggccattggctctcctccagaggagacgcac
gtctacaacgtggctgacttcagcgtcatgagctccatcgtggagggtctgaccaggacc
gtctgtgaccgggtcgaacagcttgacaaggccatcaaaggcgacacaggcccagaagtc
accatggccgctcccagagacctggtgacctcggaagtgacggccaggagtttccgggtg
tcgtggacccacgcccctggcacggtggagaagtaccgggtggtgttctaccctgccagc
gggggccagcccgaggagaaggtggtgcagggcacagtggacacggtagtgctcaactac
ctcctctccctgactgagtaccaggtggctgtgttcgccatctatgccagctcagctagc
gaggccctccgaggcagcactaccacattggccctacccatggtgaacaacctggagctg
tttgacatcacccacaatagcatgagagcccgctggagggtcgcagagggggcttctggc
tacatgatcctctatgctccactgaccgagggagacgccgccgacgagaaagaggtgaaa
gtggctgagactgtgaacgaagtggaactggagaacctgactccagacacagagtacaca
gtgaccgtgtacgccatgtacggagaggaggccagtgaccctatgaccagtcaggagacc
acgctacccctgaccccggcgcggaacctgcgcttctccgacgtcgaccacagctcggcc
aggctcacctgggaggcgacgtccaagaaggccaacggctaccgcatcatgtacgtcaag
acaaacggagtgcagaccaatgagatggatgttggccgcatcaccaccctgttgctaagg
aacctgacgtcattgacagagtacacggtggccatctttgctatctatgacgagggccag
gcagagccccttactgacagcttcaccactaagacagtcccagagcctctgaacctaaag
accagtgaagtctccacagagagcttcagggtcacctgggatcactcagcccaagacgtg
gtcctctacagactcacctggaccccaaccagaggaggagacactaaagagatgctagtg
aatggtaacaggaacagccacctgctgactggactgaggcccatcactgagtacgaagtc
tctctgattgccgtctttagaaacgaggaggaaagcgacgccgtgaccctcacagagtca
acagtggcaagaacaacgactaccacaaaagctactacaaccacaactaccacacgagct
accaccacagcagttgtgcatctgggtgcgaggaacctcctgcttagtgatcacaccacc
ttcagcatggaggtgtcctgggagctgcaggaccgcaatgtgcgtctgtaccgcgtcgcc
tatgtcaccgccaggggcgatcgtgccgaggagacgaaaatggtccccggtggtcagaac
agcctgctgctgcagccactgctgtctgacacggagtacaaggtgacggtcaccccggtc
tacaccgacggagatggccccggtgtcagccgcatgggacgcaccttgccactgtctgct
cctaggaacctgagagtgtcggaggaatggtacaaccgcttccgtatcacctgggacaca
cccccatccccaactatgggctacagggtcgtctacaaacccatctctgctccgggacct
gctctggagacctttgtgggcgaggacgtgaacaccatgctaatcctgaacctgatgagc
ggtacagagtacggcgtcagggtcatcgcctcctacaccaccggctccagcgaggccctc
actggcaaggccaggacactatacctgggagtgaccaatctgaacacctaccaggtgagg
atgaacagcatgtgtgcccagtggagttcccaccgccacgccactctgtaccgtgtggtc
atcgagtcactgctcaatggacataaacaggaggcaaggctgggaggaggagccacccgg
cactgcttcaatgacctgacggctaacacgcagtacaaaatcagtgtgtacgcccaactc
caggacacagaggggcctgcagtcaccaccacagagagaaccttccctgttcccaccccg
gcacccaccaggccgcccactaccacccctcttcccaccataccctcaaccaaggaagtt
tgcaaggcagccaaggcagacctggcgttcctagtggatggctcctggagcattggggat
gaaagcttcctgaaaatcatccgcttcctgtacagcaccacaggagcccttgacaccatt
ggaccagatggcactcaggtggccattgtccagtttagtgacgatgctagaaccgagttc
aaactcaactcctacgacaacaaggagaggctactagaggccattaaccgcatctcctac
aagggagggaacaccaagacagggctagccatccggcatgtgaaagacaccatcttcacg
gtggggggagggatccggaggggcatccccaaagtagtggtggtgttgactgacgggcgc
tctcaggacgatgtcaacaaggtctccaaagagatgcagatggaagggtacattgtcttt
gccattggttttgcggatgcggactacggggagctggtgagcatcgccagcaagcccagc
gagagacacgttttctttgtggacgatttagacgccttccagaaaattgaggaaaagctg
gtcacctttgtttgtgaggctgccactgccacttgtccttcggtggcgatgagtggcagt
accttgccaggtttcaggatgatggagatgtttggcctggtggagggtctgtatggacgt
gtatcaggagtgtccatggagcctggcaccttcaacagcttcccctgctttcgactgcac
aacaactccctccacgcccagcccaccaagtttatccaccctgagggcttgccctccgat
tacaccatcaccatgctgttccgcctgctgcctgaaacccccaaagagccctttgcattg
tgggagatcctcaacaaggacaatgagcccctggtgggcgtcatcctggacaacggtggc
aagaccctcaccttcttcaaccacgactacaaaggacagtttcagactgtgaccttcgag
ggacctgaaatcaagaagctcttctacggcagtttccacaagctgcacctggctattagc
aagaccaacgccaaggctgtcatcgactgtaagctggttggggagaaggccatcaacgcg
gcgggcaacattaccacagatggcctggaggtgctgggacgaatggtgcgctcccgggga
nagaaggacaactctgcaccgtttcaactgcagtcgtttgacatcgtctgcagcacgtcc
tgggccagccgagacaagtgctgtgagcttcctggtctgaggaaggaggaggactgtcct
gccatgccccgggcctgcacctgcacacaggacagcaaaggcccccccggccccactgga
ccccctggaggtcctgggatcagaggagggagaggggaccgtggagaaccaggagctgtg
ggcccgataggtccagttggggacgctggcactcctgggctgcaggggcctcctggcccc
cagggccccagcggccgcaccatcatgggccccccgggtggtccaggagagagaggtgag
aagggtgcagctggagctccaggaatacagggcattcctgggtctcctgggtcaccaggt
cgagagggacaaacaggaacacggggactgcctggtaaagatggaccccaggggcgaaca
ggtcctccagggactatgggcactccaggagctcccggctcaccagggtcaagtggacct
caagggtcactgggagaccaaggacctcctggttccgccggaaacaaaggagagaaggga
gaaagaggtgacctgcaatcccaggcatcggtccaagcaatcgcccggcaggtctgtgag
cagctgatacagagtcacatggctcgctacagctccatcctcaaccacatccccagtgca
cccgtttcggtccgcaccattcctggacccccaggagagcccgggcggcagggcggccaa
ggaccacagggagagcaggggcccgcgggcagaccagggttccccgggtccaacggagag
aatggacaaccaggaggcagaggtttgtcaggagagaagggtgacaagggaagcccaggt
gtaggagtccagggtcccagaggccccgtaggacccccaggaccaacgggtcaggggcgg
acaggtagccagggtccgtctggtcggccggggaaccctggaactcctgggcggccgggt
atccctggaccagtggggtcggctggacctcctggatactgtgaccagaactcttgcgtg
ggctacaacgtaggagtccaattgccccccaacgtctaccagaactatgacgaggcgggg
gaggaggacccctataggtacgacgcagggggctacccctccgagtactatcagcccaac
tacccagcgccccgaccagtcgagcccgagaacccagccctgactcagggcgacgaggtg
ctgaggtcccccgggatccaccgctcctccaggagcctggctgaagaggaggaggagaag
gagaagaagaaagaggaagaggggccggaggagaggaaaatggttggtcccatgagagag
agcaggctaaggagagccttgaggaggtcggggacacacgactga
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