Oncorhynchus gorbuscha (pink salmon): 124011997
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Entry
124011997 CDS
T07892
Symbol
vps52
Name
(RefSeq) vacuolar protein sorting-associated protein 52 homolog isoform X1
KO
K20298
vacuolar protein sorting-associated protein 52
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ogo04131
]
124011997 (vps52)
Membrane trafficking [BR:
ogo04131
]
Protein recycling
Others
EARP complex
124011997 (vps52)
Endosome - Golgi transport
Tethering complex
GARP complex
124011997 (vps52)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps52_C
Vps52_CC
Sec3_CC
DUF5740
CoV_NSP7
Cep57_MT_bd
MscS_porin
DUF3440
Rubis-subs-bind
COG6_N
DUF1664
ATG16
Motif
Other DBs
NCBI-GeneID:
124011997
NCBI-ProteinID:
XP_046181279
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Position
LG24:30406426..30417790
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AA seq
724 aa
AA seq
DB search
MADRAVTAAMSDVNTTVHSTANSMAYLQDEMKPDTDAMAPLNLGDLDLTTDEFILDEVDI
HIQANLEDDLVKEALKTGVDLRQYSKQVEDELQRIEQASIKDYIKESQNIASLHNQITAC
DSILERMEGMLSGFQSDLSSISSEIQTLQQQSVSMNMRLKNRQAVRSHLSQLVDELVVPG
AMIQVILESPVTEQEFLEQLHELNNKINFAKELSFRETLACSDIQDIVDRLKIKAVTKIR
EFILQKIYSFRKPMTNYQIPQNTLLKYRFFYQFLLANERTVAKEIRDEYVDTMSKIYYSY
FKSYSGRLLKVQYEEVADKDDLMGVEDTAKKGFFSKPSLKSRNTIFTLGQRGAVLSPAEL
EGPILIPHTAQRGDCRYPYETLFRSQHYALLDNGCREFLFLSDFFMVAGNSALDLFNSVM
GKTLSLFLKSMSTYVSDCYDSIAVFLCIHIILRFRAITNKRTIPALDKYWDAVLELLWPR
FELILEMNIQSIRNTDPQKLGVLDTRPHYITRRYAEFSSAIVSINQTFTSERTHTLLGQL
QVEVENFVLKMAAEFPSRRDQLIFLINNYDMMLSVLMERAADDSKEVEGFQQLLQARSQE
FIEEILSSPFGGMIAFVKESEALTEKGQLDRLKNDEARITQLVRGFSSTWKQSVEALSQD
VMRSFTNFKNGTGIIQGALTQLIQYYHGFHKVLAQPTFRSLAVRSELINLHHLMVEVKKH
KPNF
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atggcggatagagcagtgactgctgctatgtccgatgtaaacacaactgtccactcaacg
gcgaattccatggcatatttacaagatgagatgaagcctgacacagatgccatggccccg
ctcaacctgggtgacttggacttgaccacagatgagttcatcttggatgaggtggacatt
cacatacaggctaatcttgaagatgacttggtgaaggaggcgttgaaaacgggagttgac
ctccggcaatactctaaacaagtggaggatgaactccaacggattgaacaagcttccatc
aaagactatatcaaggagagccagaatattgcctctctgcacaaccagatcacagcctgt
gactccatactggagcgaatggagggcatgctgagcggcttccagagtgacctctcgtcc
atcagcagtgagatccagactctgcagcagcagtcggtcagcatgaacatgcggctgaag
aacaggcaggctgtacgcagccacctcagccaactggtggatgagctggtggtgcccgga
gctatgatccaggtaatcttggagagcccggtgacagagcaggagttccttgagcagctc
catgagctcaacaacaagatcaactttgccaaagagctcagcttcagggagactttggcc
tgctctgacatccaggacattgtggaccgcctcaaaatcaaggctgtcacaaagatccga
gaatttatcctgcagaagatttattccttcagaaagcccatgaccaactatcaaatcccc
cagaacaccctcctcaagtacaggtttttctatcagttcctcttggcaaacgaaaggaca
gtggccaaggagatcagggatgaatatgtggacaccatgagtaagatctactacagttac
ttcaagtcgtacagcggcaggctcctcaaagtacagtatgaagaggtggcagacaaagat
gacttgatgggagtggaagacacggccaagaaaggtttcttctccaagccctcgctgaag
agcaggaacaccatcttcaccctgggccagcggggggccgtgctgagccctgccgagctg
gaggggcccatcctcatcccccacactgcccagagaggggactgcaggtatccctatgag
acgctgttccgcagtcagcactacgccctcttggacaacggctgtcgagagttcctcttc
ctgtctgacttcttcatggtggctggaaattctgcgctggacctcttcaacagcgtcatg
ggaaagacgctcagcttgttcctgaagagcatgtccacctatgtgtcggactgctacgac
agcatcgccgtgttcctgtgtatccacatcatcctgcgtttcagagccatcacaaacaag
aggaccatcccagccctggacaagtactgggatgcggtgctggaactgctgtggcccagg
tttgaacttatcctggagatgaacattcagagcatccgcaacacggatcctcaaaaactg
ggcgtgttggacaccagaccacattatatcacacgcagatatgcagagttctcttctgcc
atagtgagcattaaccagacattcaccagcgagcgaacccacaccctccttggccaactt
caggttgaagtggagaactttgtcctgaagatggctgcagagttcccttcacgcagggac
cagctcatcttcctcatcaacaactacgacatgatgctcagtgtactcatggagagggca
gctgatgacagtaaagaggttgagggtttccaacagctcctccaggccaggagccaggag
tttattgaggagattctgtcctctccctttggtggcatgatagcatttgtaaaggagagc
gaggcgctgacggagaaagggcagctggataggctaaagaatgacgaagcccggatcacc
cagctggtcaggggtttctccagcacatggaaacagtctgtggaggctctgagtcaggac
gtcatgaggtccttcaccaacttcaagaacggcactggcatcattcagggagcgctcact
cagctgatccagtactaccatggcttccacaaggtactggcccagcccacctttcgcagc
ctggccgtgcgctctgagctcatcaacctgcaccacctcatggtcgaagtcaagaaacac
aagccaaacttctaa
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