Oncorhynchus gorbuscha (pink salmon): 124012525
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Entry
124012525 CDS
T07892
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15-like
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124012525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ogo03041
]
124012525
03009 Ribosome biogenesis [BR:
ogo03009
]
124012525
Enzymes [BR:
ogo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124012525
Spliceosome [BR:
ogo03041
]
Complex A
U2 snRNP components
U2 related factors
124012525
Complex B
124012525
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124012525
Ribosome biogenesis [BR:
ogo03009
]
Eukaryotic type
90S particles
Helicases
124012525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_25
nSTAND3
SRP54
Flavi_DEAD
Atrophin-1
AAA_29
Motif
Other DBs
NCBI-GeneID:
124012525
NCBI-ProteinID:
XP_046182210
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All DBs
Position
LG24:complement(19789912..19802918)
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AA seq
763 aa
AA seq
DB search
MSKRHRLDLGDDYSNKKRSDGKDRDRDRDRDERSKDRERDRDRDRDRDRDRERDVKPSVV
PPNTMMAVGGMLPLKQTAMQQQINPFTNLPHTPRYYEILKKRLQLPVWEYKERFNDILAR
HQSFVLVGETGSGKTTQIPQWCVDMVKGLGGPKKAVACTQPRRVAAMSVAQRVADEMDVM
LGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLATDIL
MGVLKEVVRQRSDLKVIVMSATLDAGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYL
EAAIRTVVQIHMCEEEEGDCLLFLTGQEEIDEACKRIKREIDDLGPEVGDIKVIPLYSTL
PPQQQQRIFEAAPPRKPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIR
VESLLVTAISKASAQQRAGRAGRTRPGKTFRLYTEKAYKTEMQDNTYPEILRSNLGSVVL
QLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLA
KMVIASCEFNCSNEILSITAMLSVPQCFVRPTEAKKAADESKMRFAHIDGDHLTLLNVYH
AFKQNHESTQWCYDNFVNYRSLMSADNVRSQLSRIMDRFNLPRRSTEFTSRDYYINIRRA
LVTGFFMQVAHLERTGHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCSD
IKPEWLVKVAPQYYEMGNFPQCEAKRQLERIVAKLQTKEYSQY
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaagacaccgtttagatttaggcgacgactactccaataaaaagagatctgat
gggaaagacagagatcgcgacagggaccgcgacgagcgctctaaagacagggagagggac
agggaccgcgacagagatcgggaccgggaccgagagagggacgtgaagccctctgtcgtg
ccccccaacaccatgatggccgttggaggcatgcttcctctcaagcagacagccatgcag
cagcagatcaacccgttcacaaacctgccccacacaccacgctactatgagatcttgaag
aagaggctgcagctgcctgtgtgggagtacaaggagcgcttcaacgacatcctggcacgc
caccagagctttgtgcttgtcggagagacgggctccgggaaaaccacacagataccccaa
tggtgtgtggacatggtgaagggcttgggtggccccaagaaggcggtggcctgtacccag
cccagaagggtggcagccatgagcgtggcccaaagggtggccgacgagatggatgtcatg
ctgggccaggaggtgggctactccatacgatttgaggactgcagctccgccaagaccata
ctgaagtatatgacagacggtatgttgcttcgggaagccatgaacgaccccttgctggag
cggtatggcgtgatcatcctggatgaggcccacgagagaacactggccacggacatccta
atgggagtattgaaggaggtggtccgacagaggtcagacctcaaggtgattgtgatgagt
gccacattagacgcagggaagttccaagtgtactttgacagctgtccgctgctgaccatt
cccggacgcacacaccctgtggagatcttctacacccctgagccggagcgggactacctg
gaagccgccatccgcacggtcgttcagatccacatgtgtgaggaagaggagggggactgt
ctgctgttcctcaccggacaagaggaaattgacgaggcctgtaaacggatcaaacgggag
atcgacgacttgggacctgaagtcggagacatcaaagtcattccactatattccacactg
cctccccagcagcaacaaagaatctttgaggcagcaccccccaggaagcccagcggtgcg
ataggaagaaaggttgtggtttcgacaaacattgctgagacatcccttaccatcgacgga
gtggtgtttgtgatcgatcccggttttgccaagcaaaaggtgtacaatcctcgtatcagg
gtggagtctctcctggtaacggcgatcagcaaagcctcggcgcagcagagggcaggccgt
gccggcaggacacggccagggaagactttccgcctctacactgagaaagcctacaagacc
gagatgcaggacaacacgtatcctgagattctccggtccaacttgggttctgtcgtgttg
cagttgaagaagctgggtatcgatgacctggtgcactttgacttcatggacccaccagcc
ccagagaccctgatgcgggcgctggagctgctcaactacctggcggcgctcaacgacgac
ggggacctgacagagctgggctccatgatggcagagttcccgttggacccacagctggcc
aagatggtgatcgccagctgcgagttcaactgctccaacgagatcctgtccatcaccgcc
atgctgtcagtcccgcagtgtttcgtccgccccaccgaggctaagaaggcggcggacgag
tccaagatgcggttcgcccatatcgacggagaccacctgacgctcctcaacgtctaccac
gccttcaaacaaaaccacgagtctacacagtggtgctacgacaactttgtgaactaccgt
tcgctgatgtcggccgacaacgtgcgctcgcagctgtcccggatcatggaccgcttcaac
ctgccccggcgcagcaccgaattcaccagcagagactactacatcaacatccgccgagcg
ctagtcacaggctttttcatgcaggtggctcatttggagcgcactggccattatctcaca
gtcaaggacaaccaggtggtccagctacacccctctaccgtcctggaccacaagccagag
tgggtgctctacaatgagtttgtcctcacaaccaagaactacattcgcacctgctcggat
atcaaaccggaatggctggtgaaggttgctcctcagtactacgaaatgggcaacttccca
cagtgtgaagccaagaggcagttggagcgaatcgttgccaaactccagaccaaggagtat
tcccagtactga
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