Oncorhynchus gorbuscha (pink salmon): 124012541
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Entry
124012541 CDS
T07892
Name
(RefSeq) collagen alpha-2(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
124012541
NCBI-ProteinID:
XP_046182243
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Position
LG24:45904291..46015985
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AA seq
687 aa
AA seq
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MTMLLAPVCVLLLLGGRVLGGGYPPMPQMKYMQPMMKGPVGPPFREGKGQYLDMPPMMDV
KGEPGPQGKPGPRGPSGPSGLPGKPGLGKPGFNGQPGPQGPPGFPGIGKPGLPGLPGKGG
MKGMPGNNGEVGLRGEPGPRGLPGQPGLPGPAGLSLNGKPGLPGGRGQPGSRGEPGQKGG
PGNPGERGINGENGNGKPGIPGPRGPIGLRGLPGPAGSPGVGKPGLNGLLGPSGPKGDQG
LPGGIGEPGEAGNPGLQGQPGPIGLGKPGNDGLPGGPGPLGPKGEPGLRGSPGFPGTPGY
GKPGLSGLKGDTGLSGGPGVPGDKGEHGIEGQPGDMGPDGHPGPPGLQGPMGLPGKHGMP
GLKGELGPQGHPGLPGFRGDQGPGGLSGKPGIPGDKGPPGPNGAIGKPGPKGEAGHIGLP
GNPGLLGNPGPKGEFGFVGSPGPRGQSGIPGLQGPSGPMGPQGIPGLKGESGLPGLPGLG
MLGEKGVPGPQGPQGKPGNSGLNGNPGPPGPPGPPGPAGNGQTIVAGPTDSELGGGEVPN
GRNPKPQFGRAELSASLAPAFTAILTTPFPPSGMPIKFDRTLYNGQNAYNPATGIFTSPM
SGVYYFAYHMHVKGLNLWVALYKNNVPATYTYDEYKKGYMDQASGSAVLELKENDQVWMQ
MPSDQANGLYSTEYIHSSFSGFLLCPT
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgctgttggctcctgtctgtgtgcttctgctgctgggaggccgtgtccttggg
ggaggctaccctcccatgccccagatgaagtacatgcagcccatgatgaagggccccgtg
ggaccccccttccgagagggcaagggacagtacctcgatatgccacccatgatggacgta
aagggcgagccagggccacaaggaaaacctggacccagaggcccatctggtccatcagga
cttccgggaaaaccaggactgggaaaaccaggtttcaatggccagcctggccctcaaggg
cctccaggctttcccggcattgggaagcctggacttccaggtctcccaggaaaggggggc
atgaaggggatgcccgggaataatggtgaggttgggctcaggggtgaaccaggtcccaga
ggacttccaggtcaaccaggtctccccgggccagctggcctgtctctgaatggcaaaccg
gggcttccaggcggcaggggccaacctgggtctcgtggagaaccaggacagaaaggtgga
cctggaaatcccggggagcgtggaatcaatggggagaatggcaatgggaagccagggata
ccaggacccaggggccccatcgggcttaggggcctaccagggccagctggtagcccgggt
gtgggcaaaccaggactgaacgggcttcttggtccatctgggcctaaaggggatcagggg
ctcccaggaggaataggagagccaggtgaggccggcaatccagggctgcaaggccagcca
ggacccattggattgggaaagcctggaaatgatggattgcctggaggaccaggtccactt
gggcctaaaggtgagccagggctgaggggttctccagggtttcctggaactcctggctat
ggcaagcctggtctttctgggctgaaaggagacacaggcctttctgggggaccaggggta
cctggggataagggtgagcatgggattgaggggcagccaggagacatgggtccagacgga
cacccaggaccaccaggattacagggccccatggggctcccaggaaaacacggcatgccc
ggcctgaagggagagttgggtccccagggtcatccaggtctgccagggttcagaggggat
cagggtcccggtggtctgtctggaaaacctggcattcctggagacaaaggcccgccgggt
cctaatggggctatcggaaaaccagggcccaaaggtgaggcagggcatataggcctgcca
ggaaacccaggtcttttaggcaatcctggaccaaaaggggagtttgggtttgttgggtct
ccaggaccaagaggccagtctggtatccctggtcttcaggggccttcagggccaatgggg
ccacagggtataccaggtctgaagggagaatctgggctgcctggtcttccagggctgggc
atgcttggagaaaagggagttcctggtcctcaaggtccccaaggaaaaccaggcaactct
gggcttaatggcaacccaggcccacctgggccacccgggccccctggccctgcaggaaat
ggccaaaccatcgtggctgggccaacggattcagagttgggtggaggcgaggtaccaaac
gggaggaacccaaaaccacagtttggccgtgcagagctctctgcctccctggcaccagca
tttactgccatcctcaccacacccttccctccctccgggatgcccatcaagttcgacagg
accctgtacaacgggcagaatgcctacaaccctgccaccggtatcttcaccagccccatg
tctggcgtctactactttgcctaccacatgcacgtaaagggactcaatctgtgggtggcg
ctgtacaaaaacaatgttcctgccacatacacctacgacgagtacaagaagggctacatg
gaccaggcgtctggtagcgccgtccttgagctgaaggagaacgaccaggtgtggatgcag
atgccctcggaccaggctaacgggctctactccaccgaatacatccactcgtccttctca
gggttcctgctctgtcccacataa
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