KEGG   Oncorhynchus gorbuscha (pink salmon): 124012568
Entry
124012568         CDS       T07892                                 
Name
(RefSeq) probable histone deacetylase 1-B
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
ogo  Oncorhynchus gorbuscha (pink salmon)
Pathway
ogo03082  ATP-dependent chromatin remodeling
ogo03083  Polycomb repressive complex
ogo04110  Cell cycle
ogo04330  Notch signaling pathway
ogo04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:ogo00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    124012568
   03083 Polycomb repressive complex
    124012568
 09130 Environmental Information Processing
  09132 Signal transduction
   04330 Notch signaling pathway
    124012568
   04350 TGF-beta signaling pathway
    124012568
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    124012568
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ogo03036]
    124012568
Enzymes [BR:ogo01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     124012568
Chromosome and associated proteins [BR:ogo03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     124012568
   HDAC complexes
    Sin3A-HDAC complex
     124012568
    BRAF-HDAC complex
     124012568
    REST complex
     124012568
    SHIP complex
     124012568
    MiDAC complex
     124012568
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     124012568
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    124012568
  Chromatin remodeling factors
   NuRD complex
    124012568
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 124012568
NCBI-ProteinID: XP_046182299
LinkDB
Position
LG24:59557754..59572111
AA seq 485 aa
MALSSAGGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHK
ASGEEMTKYHSDDYIKFLRSIRPDNMSEHSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSV
AGAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIH
HGDGVEEAFFTTDRVMTASFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYE
AIFKPVMAKVMEMFQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLML
GGGGYTIRNVARCWTYETAVALDSIIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDY
LEKIKQRLFENLRMLPHAPGVQIQAIPEDAPHPDSGDEEDEDPDKRISIRAHDKRIACEE
EFSDSEDEGQGGGGRRNAANHKKTKRVKTEEEKEETEEKKEVKDEDKDAEEKMDTTGPKE
ETKTC
NT seq 1458 nt   +upstreamnt  +downstreamnt
atggcgctgtcgtccgcaggaggaacaaagaagaaagtttgctattattacgacggcgac
gtgggtaattattactatggtcagggtcatcccatgaaaccccacaggatccgtatgacc
cacaacctgctgctcaactatggactgtacaggaagatggagatctacagaccccacaag
gccagtggagaggagatgaccaagtaccacagtgacgactacatcaagttcctacgttcc
atccggccagacaacatgtcagagcacagcaagcagatgcagagatttaatgtgggagag
gactgcccagtgtttgacggcctgtttgagttctgtcagctctcaacgggaggctctgtc
gcgggggcagtgaagctgaacaagcagcagacggacatcgccatcaactgggccggagga
ctccatcatgccaagaagtctgaggcctctgggttctgctacgtcaacgacatcgtcctc
gccatcctggagctgctcaagtaccaccagagggtcttgtacatagacatcgacattcac
catggagacggagtggaagaggctttcttcaccacagaccgggtcatgacggcctccttc
cacaagtatggagaatacttccctggtaccggagacctgagggacattggagcagggaag
gggaagtactacgctgtaaactaccctctcagagacggcatcgacgatgagtcttacgaa
gccatcttcaaacctgtgatggctaaagtgatggagatgttccagcccagtgcagtcgtg
ttacagtgtggagccgactctctctcaggagacagactgggctgtttcaacctcaccatc
aaaggtcatgctaagtgtgttgagtacataaagagtttcaacctgcctctgttgatgttg
ggaggaggaggttataccatccgtaacgtggctcgctgctggacctacgagaccgccgtg
gctctggacagcattatacctaacgagctgccgtacaacgactactttgagtactttggt
cctgacttcaagctccacatcagcccgtctaacatgaccaaccagaacactaatgattac
ctggagaagatcaaacagaggttgtttgagaacctgcgcatgctgccccacgccccgggg
gtgcagatacaggccatcccagaagacgctccacacccggactctggagatgaggaggac
gaggaccctgacaaacgcatctccatcagggcccatgataagaggatagcctgtgaagag
gagttctccgactctgaggatgagggacagggaggagggggaaggaggaacgctgccaac
cataagaagaccaaacgagtcaagactgaggaggagaaagaggagactgaggagaagaaa
gaagtgaaagatgaggataaagacgctgaagaaaagatggacacaacagggccaaaagaa
gaaactaagacgtgttga

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