Oncorhynchus gorbuscha (pink salmon): 124012589 Help Entry 124012589         CDS       T07892                                  Symbol skiv2l Name (RefSeq) helicase SKI2W   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism ogo  Oncorhynchus gorbuscha (pink salmon) Pathway ogo03018   RNA degradation Brite KEGG Orthology (KO) [BR:ogo00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     124012589 (skiv2l)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:ogo03019]     124012589 (skiv2l) Enzymes [BR:ogo01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      124012589 (skiv2l) Messenger RNA biogenesis [BR:ogo03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      124012589 (skiv2l)   mRNA degradation factors    3'-5' decay     Ski complex      124012589 (skiv2l) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel Helicase_C DEXQc_Suv3 ResIII MTR4-like_stalk HTH_23 DUF3516 Motif Other DBs NCBI-GeneID:  124012589 NCBI-ProteinID:  XP_046182325 LinkDB All DBs Position LG24:complement(25877891..25929090) Genome browser AA seq 1250 aa AA seqDB search MERIDLPPVGPTDLPLSLLEMGCSGRFELITHKQPNDQPLYPQSTLPHGLPPTSVGLETE VEKRFLRDPAWLPIHDTDAAFHRFLKLAERDVRVDSLLHCSSSPLHSGISVVRDPTTGML LDFTEVLLGDTGISAKNSMSLQRPPNPNPSESLRGSNTNYPFLPGGMDELTLEQIKTKSE LEEDIDFENGLLTVPPGLKAGMDFSDKDAKTTKGEINLLSLLSTFDDIVDSQPEAEEKEK GLGSGNAPKLPRTNSLEDLGIKDSPSTPGTPSTEKKDGGTTKPGEAHEERKKWAIPVDIT SPCDDFYKRIPNPAFKYPFELDMFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYAIALSQ KHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPEASCLIMTTEILRSMLYNG SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWIGRI KKKHIYVISTAKRPVPLEHYLYTGNSTKTQKEMFLLLDPTGNFQTKGYYSAIDAKKERTS KHAQSFGTKNASQKTTPNQDRAVWLSLLHFLSQRQQTPVVAFTFSRTRCDDNARSLASMD LTSSGEKSDIHSFFQKSLSRLRGGDRQLPQILLMRDLLKRGIAVHHSGILPILKEVIEML FSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLD ATGTVIILCKSGVHDMGELHVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSF SESHRDTQAHEQQIGQLKQTLSSLPPLDTEGQLSDLLPYYYTVTELRITAEALQCAVLGS VNGLKALSVGRVVVVNNKQHVNALGVLLQVSSDSVNRTFTALVICEKGNEEGGGDSPNAS AFPHLYNTALFLPDGPCGHTVQKLKLQDVSAITVKTLKVIPDRIIDNYNKRQQPRFRLDP PGQAISTATQELLRLAEANPGGVVTLDAVNDLQLKSVDVVEGTMRLRLLQESLKDFNCIH SPTFSEQFLRVQERMSVQEELDKLLFLVSDQSLSLLPEYHQRIKVLQSLQYVDNSGAVQL KGRVACQISSHELLLTELLFENALSPLAPEESAALLSCLVFQQKTQVEPHITNTLQEGIE RVLAVAQRIGELQRDCGITQTAEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTV VRCIQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH NT seq 3753 nt NT seq  +upstreamnt  +downstreamnt atggaaagaatagatcttccccctgtgggccccacagatctcccactatccctgctggag atgggttgctctggcaggtttgagctcatcacacataaacagcctaatgaccagcccctg tatccacaaagcacgctcccccatggactccctcccaccagtgtgggcctggagacagag gtagagaagcgcttcctacgcgaccctgcctggcttcccatacacgataccgacgctgcc ttccacaggtttctgaagctggctgagcgagacgttcgtgtggactctcttcttcattgc tcttcgtctcctctccactctggcatctcagtagtcagagatccaacgacaggaatgctt ttggacttcactgaggtgttactgggggacacaggcatctctgctaagaattcaatgtcc ctgcagcgtccaccaaaccctaatccctctgagagcctccgaggaagcaacaccaactac ccctttctgcccggtggtatggacgagctgacactggagcaaatcaagacgaaatccgag ctggaggaagacatagactttgagaacgggttactcacagtgccccctggacttaaagct gggatggacttcagtgacaaagatgccaaaaccacaaagggagaaatcaatctcctgtcc ctcctatccacctttgatgacatcgtagactcccagcctgaggcagaggagaaagagaaa ggactcggaagcggaaatgctccaaaactacccagaaccaacagcctggaagacctgggg atcaaggactctccctctacacctgggaccccctcgacagagaagaaagatggaggaacg accaaaccaggagaggcccacgaggagaggaagaaatgggctatcccagtagacatcacc tcaccttgcgatgacttctacaaacgcatccccaaccctgccttcaagtatccctttgag ttggacatgttccagaaacaggcagtgttgaggctggaggcccatgagtctgtgtttgtg gcagctcacacatcagcaggcaaaaccgtggtggcagaatacgccatagctctctcacaa aaacacatgaccaggaccatctacacctcccccatcaaggcgctgtccaatcagaagttc cgggacttcaagaccacctttggggatgtggggctgctgactggggatgtccagctgagt cctgaagcctcctgtctcatcatgaccactgagatattgaggtccatgctctataacggt tcagaggtcatcagagatttggagtgggtgatctttgacgaagttcactacatcaatgat gctgagagaggagtggtgtgggaggaggttctgatcatgttacctgaccacgtcagcatt attctgctgagtgccactgtccccaacgctgtggagttcagtgagtggatcgggcgcatt aagaagaagcacatctatgtgatcagcacagcgaagagacctgtgcctctggagcactac ctgtacacaggcaacagtaccaagacccagaaagagatgttcctactgctggaccctaca ggcaacttccaaaccaaagggtactattctgcaatagatgccaaaaaggaacgcaccagt aaacacgcccagtcctttgggacaaaaaatgcatctcagaagactacacccaaccaggac cgggcggtgtggctttccctcctccacttcctgtcccagcgccagcagacccccgtcgtg gcgttcaccttctccaggacgcgctgcgacgacaacgcccgctctctagcctccatggac ctcaccagctcgggggagaagagcgacatccactccttcttccagaagagcctgagccgc ctcaggggaggggaccgccagctgccccagatcctgttgatgagggatctgctgaagagg gggatcgccgtgcatcacagcggcatcctgccaatcctaaaggaggtcatagagatgctg ttctcacgggggctagtaaaggttctgtttgccactgagacgtttgctatgggagtgaat atgcccgcgaggacagttgtgtttgacagcatacggaaacacgatggtaccggcttccga aacctgctgcctggtgagtatatccaaatggctggcagagctggtaggagaggtctggat gccacaggcactgtcatcatcctatgcaagtcaggggtacatgatatgggagaactacat gtcatgatgctggggaagcccacagtgctgcagtcccagttcaggctgacctacaccatg attctcaacctgctgcgtgtggaggccctccgagttaccgacatgatgaggaggagcttc tctgagagccacagagacacacaggcccatgagcagcagatcggtcagttgaaacagact ctgtcctctcttcctcctctggacacggagggtcagctgtctgaccttctgccgtactac tacactgtcactgagctacgcatcaccgctgaggcgctgcagtgtgcagttctggggtcc gtgaatgggttgaaggctctctctgtgggacgagtggtagtggtcaacaacaaacagcac gtcaacgcccttggagtcctcctacaggtgtccagcgactcagtgaatcgtacgtttacc gctctcgtcatctgtgagaaaggcaacgaggagggaggaggggacagccccaacgccagt gccttcccccacctctacaacactgccctctttctacctgatggtccctgcggtcacacg gtccagaagctgaagctacaggacgtgtcagccatcacagtcaagaccctgaaggtgatc cctgaccgaatcattgacaactataacaagaggcagcagccgcgcttcaggcttgatcct ccgggccaagccatctccacggcaacccaggagctcctgcgattggcggaggccaaccca ggcggggtggtgacccttgacgcggtgaatgacctccagctgaagagtgtggatgtggtg gagggcacgatgaggctgcgcttgctgcaggaaagcctcaaagacttcaactgcatccac tcacccaccttctcagaacagtttctgagggtgcaggagaggatgagtgttcaggaggag ctggacaaactgctcttcctcgtctcagatcagtccctgtctctactgccagagtaccac cagagaatcaaggtgctccagtccctgcagtacgtggacaatagcggtgctgtgcagctg aagggcagggtggcctgccagatcagtagccatgagctgctcctcacagagctactattt gagaacgccttgagtcccctggcccctgaggagagcgccgccctgctgtcctgtctggtc tttcaacagaagacccaggtggagccccacatcaccaacacactgcaggagggtattgag agagtgctggcagtggcccagcgtattggggaactgcagagggactgtgggataacccag acagctgaagaatttgtgggccagttcaagtttggcctgaccgaagtggtatactgctgg gccagaggcatgccatttgcagagattgcacagttaacagacgtccaggagggcacggtg gtgcgctgcatccagagactagacgaggtgctgaaggaggtgcgccaggcagcccgcatc gtgggagactcggtcctgggcagcaagatggagaaggcctccctggccattcgcagagac atcgtgttcactgcttcgctctacacacactaa

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