Oncorhynchus gorbuscha (pink salmon): 124012671 Help Entry 124012671         CDS       T07892                                  Name (RefSeq) pre-mRNA-processing factor 19   KO K10599   pre-mRNA-processing factor 19 [EC:2.3.2.27] Organism ogo  Oncorhynchus gorbuscha (pink salmon) Pathway ogo03040   Spliceosome ogo04120   Ubiquitin mediated proteolysis Brite KEGG Orthology (KO) [BR:ogo00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     124012671   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     124012671  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:ogo03041]     124012671    04121 Ubiquitin system [BR:ogo04121]     124012671    03400 DNA repair and recombination proteins [BR:ogo03400]     124012671 Enzymes [BR:ogo01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      124012671 Spliceosome [BR:ogo03041]  Complex B   Other components    Prp19 complex     124012671  Complex C    Prp19-CDC5 complex     124012671 Ubiquitin system [BR:ogo04121]  Ubiquitin ligases (E3)   U-box type E3    124012671 DNA repair and recombination proteins [BR:ogo03400]  Eukaryotic type   Other factors with a suspected DNA repair function    PSO4 complex     124012671 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Prp19 Beta-prop_EML_2 WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR75_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st Beta-prop_IFT140_1st Beta-prop_SCAP NBCH_WD40 Beta-prop_EIPR1 Beta-prop_TEP1_C Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_SPT8 Beta-prop_Vps41 PEP5_VPS11_N U-box Beta-prop_DCAF4 Beta-prop_HPS5 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 Beta-prop_DCAF12 PROPPIN Cytochrom_D1 B-prop_COPA_B_2nd Nucleoporin_N zf-Nse ATG16 Cep57_MT_bd Peripla_BP_2 Motif Other DBs NCBI-GeneID:  124012671 NCBI-ProteinID:  XP_046182493 LinkDB All DBs Position LG24:12356809..12368359 Genome browser AA seq 505 aa AA seqDB search MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKYIAENGTDPMNGQPLSEEQLIDIKVSHP IRPKAPSSTSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL TKEVTAAREALATLKPQAGLVVAQAVASQPHVTAGGAGEPMEVSEQVGMIPEIIQKLQDK ATVLTTERKKRGKTVPEELVRTEDLSKYRQVATHAGLHSASVPGILSLDLCPSDTNKVLT GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCV QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDEAAGCALTCAQFH PDGLIFGTGTADSQIKIWDLKERTNVANFPGHIGPVTSIAFSENGYYLATGAQDSSVKLW DLRKLKNFKTITLDNNYEVKSLVFDQSGTYLAVGGTDIRVYICKQWSEVLNFTEHTGVVT GVAFGEHAQFLTSTGMDRSLKFYSL NT seq 1518 nt NT seq  +upstreamnt  +downstreamnt atgtccctggtttgtgcaatatcaaatgaggtcccagagcacccgtgcgtgtcgccggtg tccaaccaggtgttcgagcggcggctgattgagaagtacatagctgagaatggaacagac cctatgaatgggcagcctctgtcagaggaacagctgatagacattaaagtgtctcacccc atcagacccaaagctccctcatccactagcatcccagccatcctcaaagctctgcaggac gagtgggatgcggtgatgctccacagtttcaccttgaggcagcagctgcagacaacgcgt caagaactaagccacgccctctaccagcacgacgccgcctgcagggtcatcgcccgtctc accaaggaggtcactgccgccagagaggctctggccactctgaagccacaggcaggattg gtggtggctcaggcagttgcttcccagccccatgtcacggctggaggtgcaggagagccc atggaggtcagtgagcaggtgggaatgataccagagatcatacagaagctgcaagacaag gccaccgtcctgaccacggagagaaagaagagaggaaagacagttccagaagagctggtc cgaacggaggacctcagcaagtacagacaagtcgctacccatgctggtctccacagtgcc agtgtgcctgggatcctgtctctggacctgtgtccctccgacaccaacaaagtgctcact ggcggggctgataagaacgtggtggtgtttgataagaaggaggagcagatcatcgcaacc ctgaaaggacataccaagaaggtcacctctgtcatctaccacccctctcagtcggtagtg ttctcagcctctccagacagcactatccgcgtgtggtccgttaccgggggcaactgtgtc caggtggtgcgggctcacgaggcgagcgtcaccgggctctccctccacgccaccggagac tacctgctcagctcctccgaggatcagtactgggccttctctgacatccaaacaggtcgt gttctcaccaaggtcactgatgaggctgcaggatgtgctctgacctgtgcccagttccac cctgacggtctgatcttcgggacggggacggccgactctcagatcaagatctgggacctg aaggagcgcaccaacgtggccaacttccccggccacatcggccctgtcacctccatcgcc ttctctgagaacggatactacctggctacaggtgcacaggacagctcagtgaagctctgg gatctgaggaagctcaaaaatttcaaaaccatcaccctggacaacaactatgaggtgaag tccctggtgtttgaccagagtgggacgtacctggctgtgggtggcactgacatcagggtc tacatctgtaagcagtggtccgaggtcctcaacttcacagaacacactggggtggtgaca ggcgtggcctttggggagcacgcccagttcctcacctccactggaatggacaggagcctc aagttctacagcctgtaa

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