Oncorhynchus gorbuscha (pink salmon): 124012790
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Entry
124012790 CDS
T07892
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71-like
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
ogo
Oncorhynchus gorbuscha (pink salmon)
Brite
KEGG Orthology (KO) [BR:
ogo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ogo03019
]
124012790
04121 Ubiquitin system [BR:
ogo04121
]
124012790
Enzymes [BR:
ogo01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124012790
Messenger RNA biogenesis [BR:
ogo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124012790
Ubiquitin system [BR:
ogo04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
124012790
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NHL
DUF4934
Filamin
DUF5128
zf-B_box
SGL
ANCHR-like_BBOX
zf-RING_5
zf-B_box_Trim66
zf-C3HC4
zf-RING_2
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
124012790
NCBI-ProteinID:
XP_046182708
LinkDB
All DBs
Position
LG24:42504230..42555945
Genome browser
AA seq
839 aa
AA seq
DB search
MASFSDSDLQTCPLCKELCGSSSTPISSNSSTSSSSSHSSSSSFSSRRLHVLPCLHAFCR
QCLEGQRSPGDPLKLSCPTCNQKVSISEAGVDSLPSSNFLFSNLLDVVVSSEEQLQLGQN
INGHHRGVSGGSIPGFHHPHGGLLRPHRLGEPTCSSCDEGNLAGSHCLDCQEYLCDNCVR
AHQRVRLTKDHFIERLAESLHQHQAGRGKIIPIGGGGEGGGDVGVSLAQSFHYNFSLLPL
FQDRMSFCQNHDNEVFLFFCETCSVPICRECSVGRHVGHSLVYLQDAVQDSRDITIQLLA
DAQQGRQAVQLSMEKAQAIVEQVEIKAKLVQTEVKNIILRHKKALEERECQLLWRVEKIR
QLKAKSLYLQVEKLHQNLTKLDSTIAAVTQVLDEGRHLDVLLARERMLTQIQELKSLRGL
LQPQEDDRFMFMPPDQALYIAIQSMGLISSGAFATVTKAHGEGLKTALRGKPASFTVIGY
DHDGEPRLSGGDAVSAVVMAAVDGNLSAAEVCDHLNGSYTVSYLPKAEGEYLVSVLVCNQ
HIMGSPFKVLVKSGRSYGALGSPVSAFGGEGEGEGQLCRPWGISVDKEGYVVVADRSNNR
VQIFKPCGAFYHKFGSLGSRPGQFDRPAGVACDSQRRIIVADKDNHRVQVFTFDGQFMLK
FGEKGTKNGQFNYPWDVAVNSAGKILVSDTRNHRVQLFGPDGSFINKYGFEGALWKHFDS
PRGVAFNHEDHLVVTDFNNHRLLVIRPDCQSARFLGSEGTGNGQFLRPQGVAVDQENRII
VADSRNHRVQVFEPNGNFLCKFGMQGSGFGQMDRPSGVAVTPDGVIVVVDFGNNRILKF
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggcttcattctcagactccgacctacaaacctgtcctctctgcaaggagctctgtggc
tcctcctccactcctatttcctccaactcctccacctcatcctcctcatctcattcctcc
tcctcgtcgttctcctcccggcgcctccatgtcctcccctgcctccacgccttctgcagg
cagtgtctggagggccagcgcagccctggggaccctctcaaactcagctgccccacctgc
aatcagaaggtctccatctctgaagccggagtggactccctcccttcctccaacttcctc
ttcagtaaccttctggatgtggtggtgagctccgaggagcagctccaactcggccagaat
atcaacggccaccaccggggggtcagcggtggctccatacccgggttccaccacccccac
ggcggactcctccgcccgcaccgcctgggagagcctacgtgtagctcctgtgacgagggg
aacctggccggctcccactgcctggactgccaggagtacctgtgtgataactgcgtccgt
gcccaccagagggtccggctgaccaaggatcacttcattgagaggctagctgagagcctg
caccagcaccaagcgggtcgaggcaagatcatccccatcggaggaggtggagaagggggg
ggagacgtgggtgtctccctggcccagtcctttcactacaacttctccctgctacctttg
ttccaggacaggatgagcttctgtcagaaccacgacaacgaggtgtttctgtttttctgt
gagacgtgctcggtgccgatctgtagggagtgtagtgtgggcagacacgtgggccacagc
ttggtctatctacaggatgctgtccaggactccagagacatcaccatccagctactggcc
gacgcacagcaaggaagacaggctgtacagctgagtatggagaaagcccaggccatagtg
gagcaggtagagatcaaggccaagttggttcagacagaggtgaagaacatcatcctcaga
cacaagaaagccctggaggagagagagtgtcagctactctggagggttgagaagatccgc
cagctgaaagccaagtctctgtacctgcaggtagagaagctgcatcagaacctgaccaag
ctggacagcaccattgcagccgtcactcaggtgctcgacgagggccgtcacctggacgtg
ctgctggccagagagcgcatgctgacccagatccaggagctcaagtctctcagaggcctg
ctgcagccacaggaagacgacaggttcatgttcatgcctccagaccaggccctgtacata
gccatccagtccatggggctgatcagtagcggagcgttcgcgaccgtcaccaaagctcat
ggagagggcctaaagaccgcactccgcggcaagcctgcctccttcaccgtgattggctac
gaccatgacggggagccccgcctctcgggcggtgacgcggtgtcagcagtagtgatggca
gcagtggatggtaacctgtcggctgccgaggtgtgtgaccacctgaacgggtcatacaca
gtcagctatttgcccaaagcagagggagaatatctggtgtcagttctggtctgtaaccag
cacatcatgggtagcccctttaaggtgctggtgaagtctgggcggagctatggcgccctg
gggtccccggtgtctgcattcggtggtgagggggaaggggaggggcagctgtgtcggccc
tgggggatcagcgtggacaaggagggatacgtggtggtggccgaccgcagtaacaaccgc
gtacagatctttaagccgtgcggtgccttctaccacaagtttggctccctgggttctcgc
cccggtcagtttgaccgtccagcgggcgtggcatgcgacagccaacgccggatcatcgtg
gcggacaaagacaaccaccgcgtgcaggtgttcactttcgacgggcagttcatgctcaag
ttcggcgagaagggcactaagaacgggcagttcaactacccctgggatgtggcggtgaat
tctgcagggaagatactggtctctgacaccaggaaccaccgtgtccagctctttggccct
gatgggtccttcatcaacaagtacggctttgaaggcgctctgtggaaacactttgactca
ccgcgtggcgtcgccttcaaccacgaggaccacctggtcgtcaccgacttcaacaaccat
cgtctgctggtgatccggccggactgccagtctgcccggttcttgggctcagagggaacc
ggtaacgggcagttcttgcgtccgcagggcgtggctgtggaccaggagaaccggatcatc
gtggctgactcgaggaaccaccgggtgcaggtattcgagcccaacgggaacttcttatgt
aaatttggtatgcaagggagtggctttggacagatggaccgcccctccggtgttgccgtg
acgcctgacggagtcatcgtggtcgtcgattttggaaacaaccgcatcctcaagttttga
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